From 3f9f138716f63f32c172a6b6714535a016e7d2e8 Mon Sep 17 00:00:00 2001 From: Anubhav Jain Date: Fri, 10 May 2019 10:31:56 -0700 Subject: [PATCH] Update to v1.9.1 --- docs/_sources/changelog.rst.txt | 6 ++- docs/_sources/fireworks.flask_site.rst.txt | 8 ++++ docs/_static/documentation_options.js | 2 +- docs/backgroundtask.html | 6 +-- docs/basesite_tutorial.html | 6 +-- docs/changelog.html | 11 +++-- docs/config_tutorial.html | 6 +-- docs/contributing.html | 6 +-- docs/contributors.html | 6 +-- docs/controlworker.html | 6 +-- docs/dataflow_tasks.html | 6 +-- docs/defuse_tutorial.html | 6 +-- docs/design_tips.html | 6 +-- docs/duplicates_tutorial.html | 6 +-- docs/dynamic_wf_tutorial.html | 6 +-- docs/failures_tutorial.html | 6 +-- docs/fileiotasks.html | 6 +-- docs/filepad_tasks.html | 6 +-- docs/filepad_tutorial.html | 6 +-- docs/firetask_tutorial.html | 6 +-- docs/fireworks.base_site.html | 6 +-- docs/fireworks.core.html | 6 +-- docs/fireworks.core.tests.html | 6 +-- ...examples.custom_firetasks.hello_world.html | 6 +-- docs/fireworks.examples.custom_firetasks.html | 6 +-- ....examples.custom_firetasks.merge_task.html | 6 +-- docs/fireworks.examples.html | 6 +-- .../fireworks.examples.tutorial_examples.html | 6 +-- docs/fireworks.features.html | 6 +-- docs/fireworks.features.tests.html | 6 +-- docs/fireworks.flask_site.html | 44 ++++++++++++++++-- docs/fireworks.html | 7 +-- docs/fireworks.queue.html | 6 +-- docs/fireworks.scripts.html | 6 +-- docs/fireworks.tests.html | 6 +-- docs/fireworks.user_objects.dupefinders.html | 6 +-- docs/fireworks.user_objects.firetasks.html | 6 +-- ...ireworks.user_objects.firetasks.tests.html | 6 +-- docs/fireworks.user_objects.html | 6 +-- ...fireworks.user_objects.queue_adapters.html | 6 +-- ...rks.user_objects.queue_adapters.tests.html | 6 +-- docs/fireworks.utilities.html | 6 +-- docs/fireworks.utilities.tests.html | 6 +-- docs/genindex.html | 22 ++++++--- docs/guide_to_writing_firetasks.html | 6 +-- docs/index.html | 6 +-- docs/installation.html | 6 +-- docs/installation_notes.html | 6 +-- docs/introduction.html | 6 +-- docs/license.html | 6 +-- docs/maintain_tutorial.html | 6 +-- docs/modules.html | 7 +-- docs/multi_job.html | 6 +-- docs/objects.inv | Bin 8270 -> 8315 bytes docs/offline_tutorial.html | 6 +-- docs/performance_tutorial.html | 6 +-- docs/priority_tutorial.html | 6 +-- docs/py-modindex.html | 11 +++-- docs/pytask.html | 6 +-- docs/python_tutorial.html | 6 +-- docs/qadapter_programming.html | 6 +-- docs/query_tutorial.html | 6 +-- docs/queue_tutorial.html | 6 +-- docs/queue_tutorial_pt2.html | 6 +-- docs/quickstart.html | 6 +-- docs/reference.html | 6 +-- docs/rerun_tutorial.html | 6 +-- docs/scripttask.html | 6 +-- docs/search.html | 6 +-- docs/searchindex.js | 2 +- docs/security_tutorial.html | 6 +-- docs/setup.html | 6 +-- docs/templatewritertask.html | 6 +-- docs/tracker_tutorial.html | 6 +-- docs/update_text.html | 6 +-- docs/virtualenv_tutorial.html | 6 +-- docs/worker_tutorial.html | 6 +-- docs/workflow_tutorial.html | 6 +-- docs_rst/changelog.rst | 6 ++- docs_rst/fireworks.flask_site.rst | 8 ++++ fireworks/__init__.py | 2 +- setup.py | 2 +- 82 files changed, 311 insertions(+), 229 deletions(-) diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt index 92c960256..9fa29b975 100644 --- a/docs/_sources/changelog.rst.txt +++ b/docs/_sources/changelog.rst.txt @@ -2,11 +2,15 @@ FireWorks Changelog =================== +**v1.9.1** + +* fix webgui JSON issue (D. Winston) +* add time_min to SLURM template (M. Horton) + **v1.9.0** * fix backward compatibility issues in using a MongoDB URI, added a separate "uri_mode" parameter. (thanks to M. Bercx for pointing out) - **v1.8.9** * added ability to connect via MongoDB URI and added 'lpad init -u' command. diff --git a/docs/_sources/fireworks.flask_site.rst.txt b/docs/_sources/fireworks.flask_site.rst.txt index 9a48c0e1f..fbc1ea950 100644 --- a/docs/_sources/fireworks.flask_site.rst.txt +++ b/docs/_sources/fireworks.flask_site.rst.txt @@ -28,6 +28,14 @@ fireworks.flask\_site.helpers module :undoc-members: :show-inheritance: +fireworks.flask\_site.util module +--------------------------------- + +.. automodule:: fireworks.flask_site.util + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js index 133c98c28..212e16c62 100644 --- a/docs/_static/documentation_options.js +++ b/docs/_static/documentation_options.js @@ -1,6 +1,6 @@ var DOCUMENTATION_OPTIONS = { URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '1.9.0', + VERSION: '1.9.1', LANGUAGE: 'None', COLLAPSE_INDEX: false, FILE_SUFFIX: '.html', diff --git a/docs/backgroundtask.html b/docs/backgroundtask.html index 93393a5ea..849012391 100644 --- a/docs/backgroundtask.html +++ b/docs/backgroundtask.html @@ -6,7 +6,7 @@ - Running Tasks in the Background — FireWorks 1.9.0 documentation + Running Tasks in the Background — FireWorks 1.9.1 documentation @@ -36,7 +36,7 @@

Navigation

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  • - + @@ -188,7 +188,7 @@

    Navigation

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    Navigation

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  • - + @@ -154,7 +154,7 @@

    Navigation

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    Navigation

  • previous |
  • - + @@ -43,6 +43,11 @@

    Navigation

    FireWorks Changelog

    +

    v1.9.1

    +

    v1.9.0

    diff --git a/docs/config_tutorial.html b/docs/config_tutorial.html index 8fa85a948..7fcb83414 100644 --- a/docs/config_tutorial.html +++ b/docs/config_tutorial.html @@ -6,7 +6,7 @@ - Modifying the FW Config — FireWorks 1.9.0 documentation + Modifying the FW Config — FireWorks 1.9.1 documentation @@ -36,7 +36,7 @@

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    Navigation

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  • - + @@ -188,6 +188,43 @@

    Submodulesfireworks.flask_site.helpers.wf_filt_given_fw_filt(filt, lp)
    + +
    +

    fireworks.flask_site.util module

    +
    +
    +class fireworks.flask_site.util.MongoJsonEncoder(*, skipkeys=False, ensure_ascii=True, check_circular=True, allow_nan=True, sort_keys=False, indent=None, separators=None, default=None)
    +

    Bases: json.encoder.JSONEncoder

    +
    +
    +default(obj)
    +

    Implement this method in a subclass such that it returns +a serializable object for o, or calls the base implementation +(to raise a TypeError).

    +

    For example, to support arbitrary iterators, you could +implement default like this:

    +
    def default(self, o):
    +    try:
    +        iterable = iter(o)
    +    except TypeError:
    +        pass
    +    else:
    +        return list(iterable)
    +    # Let the base class default method raise the TypeError
    +    return JSONEncoder.default(self, o)
    +
    +
    +
    + +
    + +
    +
    +fireworks.flask_site.util.jsonify(*args, **kwargs)
    +

    flask.json.jsonify with cls=MongoJsonEncoder passed to flask.json.dumps

    +

    Body copied from flask==1.0.2 (latest);

    +
    +
    diff --git a/docs/fireworks.html b/docs/fireworks.html index 40ef43307..b10cb51ee 100644 --- a/docs/fireworks.html +++ b/docs/fireworks.html @@ -6,7 +6,7 @@ - fireworks package — FireWorks 1.9.0 documentation + fireworks package — FireWorks 1.9.1 documentation @@ -28,7 +28,7 @@

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  • - + @@ -128,6 +128,7 @@

    Subpackagesfireworks.flask_site.app module
  • fireworks.flask_site.gunicorn module
  • fireworks.flask_site.helpers module
  • +
  • fireworks.flask_site.util module
  • Module contents
  • @@ -312,7 +313,7 @@

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Tasks in the Background","Using the Web GUI","FireWorks Changelog","Modifying the FW Config","Contributing Code to FireWorks","Contributors","Controlling the directory and Worker of execution","Using the dataflow Firetasks","Canceling (pausing), restarting, and deleting Workflows","Tips for designing Firetasks, FireWorks, and Workflows","Handling Duplicates Automatically","Dynamic Workflows","Dealing with Failures and Crashes","Using the built-in FileIO Tasks","Using the built-in FilePad Tasks","Using FilePad for storing and retrieving files","Defining Jobs using Firetasks","fireworks package","fireworks.base_site package","fireworks.core package","fireworks.core.tests package","fireworks.examples package","fireworks.examples.custom_firetasks package","fireworks.examples.custom_firetasks.hello_world package","fireworks.examples.custom_firetasks.merge_task package","fireworks.examples.tutorial_examples package","fireworks.features package","fireworks.features.tests package","fireworks.flask_site package","fireworks.queue package","fireworks.scripts package","fireworks.tests package","fireworks.user_objects package","fireworks.user_objects.dupefinders package","fireworks.user_objects.firetasks package","fireworks.user_objects.firetasks.tests package","fireworks.user_objects.queue_adapters package","fireworks.user_objects.queue_adapters.tests package","fireworks.utilities package","fireworks.utilities.tests package","The Comprehensive Guide to Writing Firetasks with Python","Introduction to FireWorks (workflow software)","Installing FireWorks","Installation Notes on various clusters / supercomputing centers","Introductory Tutorial","License","Database administration commands","fireworks","\u201cPacking\u201d small jobs into larger ones with multi job launcher","Running FireWorks in \u201coffline\u201d mode on firewalled systems","Improving FireWorks performance","Assigning job priority","Using the PyTask","Using Python to command 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,40,41,52,59,60,61,69],child_id1:19,child_id2:19,children:[6,7,11,19,34,40,59,60,69],choic:69,choos:[9,13,19,42,44,45,51,58],chop:41,chose:8,chosen:[51,56],chri:5,chunk:[7,34],chunk_numb:[7,34,35,52],cimmandlinetask:35,circleci:2,citat:41,clarifi:[4,16],clariti:2,clash:39,classifi:12,classmethod:[19,20,26,29,31,34,36,38,39],clean:[2,6,11,12,41,44,56,57,60,67,68,69],cleaner:44,cleanli:[4,67],cleanup:2,clear:[2,4,10,11,19,38,57,60],clear_log:38,clearer:16,clearli:[11,58],cli:2,click:1,clickabl:1,client:[19,62],cloader:2,clock:12,clone:42,close:12,cloud:[42,43,56,62],cls:[28,38],cluster:[41,56],cmd_line_test:2,cobalt:[2,36],code:[0,2,3,6,11,13,16,19,25,40,41,42,44,45,48,53,54,56,61,67],code_matgen:[36,58],codebas:[4,9,54],coffe:[7,52],coll:[26,28],collabor:4,collect:[2,7,19,26,29,38,60,66],collect_stat:26,collection_nam:38,collis:[9,40],colon:16,color:[2,38],com:[19,29,42,49,55],combin:[7,11,16,28,34],combo:12,come:[12,13,14,19,20,23,24,31,34,40,41,42,49,56,58],comfort:16,comma:[2,8,51,60],command:[2,3,6,7,8,11,12,16,19,20,23,24,28,29,31,34,35,40,41,42,43,44,48,49,54,55,56,57,58,60,65,66,68,69],command_line_tool:34,command_spec:[7,34],command_v1:68,commandlinetask:[34,35],commandlinetasktest:35,comment:2,commit:2,commmand:2,common:[10,38,40,60,64],common_adapt:[17,32,54],commonadapt:[2,36],commonadaptertest:37,commun:[3,4,13,16,41,49,61,64],compact:[13,46],compani:69,compar:49,compare_stat:26,compat:[2,6],compatibil:2,compil:[12,26,29,43],complet:[2,9,10,11,12,16,19,26,40,41,42,44,48,49,54,55,56,57,58,59,60,62,64,65,68,69],complete_launch:19,complex:[4,11,16,40,41,44,54,56,61],complic:[16,41,56,57],compon:[41,59],compos:[12,34,59],comprehens:42,compress:[2,13,14,15,34,38,40],compressdecompressarchivedirtest:35,compressdir:[2,13],compressdirtask:34,comput:[4,6,9,11,12,16,19,26,42,44,45,48,49,56,58,60,64,69],computat:41,concaten:2,concentr:10,concept:40,conceptu:69,concern:[4,20],concurr:41,condit:[2,4,45],config1:56,config2:56,config:[1,2,6,12,14,34,40,41,44,48,51,54,56,58,62,65],config_file_dir:3,config_to_dict:17,configtest:31,configur:[3,12,13,15,16,28,41,42,43,44,48,49,50,60],confin:42,confirm:[2,10,11,16,44,51,56,68],conflict:[2,34,52,67],conform:[2,40],congratul:56,conjunct:12,connect:[2,11,16,19,38,41,44,48,49,56,58,62,69],connnect:42,consecut:48,consequ:57,consequenti:45,consid:[6,10,16,26,42,56],consider:[56,57],consist:[0,2,11,12,15,16,44,54,65,69],constrain:10,constraint:[6,12,26,69],construct:[16,39,40],constructor:16,consult:16,contact:[2,4,10,12,42,43,49,54,56,67],contain:[2,3,6,7,9,10,11,13,15,16,19,20,23,24,31,34,38,40,41,42,44,50,54,55,56,57,58,60,61,62,64,67,68,69],content:[10,13,15,42,47,49,69],context:[7,16,19,34,52,64,65],continu:[11,12,16,42,44,61,67,68,69],contract:45,contrast:69,contribut:[2,5,10,42,54,56],contributor:[4,41,45],control:[2,13,16,40,41,44,48,51,53,59],conveni:[9,38,44],convers:2,convert:[19,26,38],convinc:56,coordin:[38,56],copi:[2,10,11,12,13,16,19,20,28,34,38,40,41,42,52,56,57,59,60,62,64],copy2:[13,34],copyfil:[13,34],copyright:45,copytre:[13,34],core:[0,9,11,16,17,23,24,31,34,41,44,47,48,56,57,58,66,69],correct:[2,6,12,16,19,20,56,58,62,64,69],correctli:[12,16,43,54,56,69],correspond:[3,10,13,19,51,56,57,61,64],cossei:[2,5],costli:10,could:[6,9,11,12,16,19,28,40,42,44,48,57,58,61,64,68,69],couldn:19,count:[2,16,19,26,29,36,38,54,55],count_onli:19,coupl:[40,42],cours:[6,12,44,69],cover:[11,12,13,16,40,41,44,64,67],cpe3505:41,cpe:41,cpu:[2,41],crash:[2,6,41,57,59,60],creat:[0,2,3,6,7,9,10,11,15,19,26,29,34,38,40,41,42,44,48,54,56,58,60,64,65,66,67],create_datestamp_dir:38,create_launcher_dir:29,created_on:[2,11,19,42,44,58],creation:[2,19],cred:38,credenti:[56,62,68],criteria:38,critic:6,cron:43,cryptic:42,csh:61,ctrl:12,ctx:38,cumbersom:[9,16],curent:34,curiou:44,curli:64,curr_doc:26,curr_recur:26,current:[1,2,3,7,11,13,14,19,26,29,34,36,40,52,56,57,59,61,68],custom:[0,1,2,3,7,8,9,11,12,28,40,44,51,54,55,60,61],custom_firetask:[17,21],customiz:10,cycl:2,daemon:[2,42],dag:[19,41],dagflow:[17,39,47],dagflowtest:39,dai:[3,26,43],daili:26,dale:5,damag:45,dan:5,danger:[19,40],daniel:41,dashboard:[2,28],data:[0,1,2,7,8,9,10,16,19,20,23,24,26,31,34,35,38,40,41,42,44,45,48,58,60,61,65,66,69],data_per_detour:20,databas:[2,6,8,10,11,15,16,19,20,26,38,40,41,42,44,48,49,56,57,58,60,64,65,69],dataflow:[34,35,41,52],dataflow_task:[17,32],dataserv:[26,38],date:[0,2,3,19,26,38,44,66],datestamp:6,datetim:[2,19,26,28],datetime_handl:38,david:5,davidson:5,db_field:19,db_file:38,db_launch_field:19,dbpath:[44,58,62],dbs:20,ddthh:26,deactiv:67,deal:41,deborah:5,debug:[1,2,4,38,42,44,54,65],debugg:[2,12,19],decid:[9,16,40,54],decim:51,decod:2,decode_monti:2,decompress:[15,34],decompressdir:2,decompressdirtask:34,deconstruct:[20,31,35,39],decor:[38,40],decorate_fwact:19,decorated_stat_list:26,decoupl:[40,41],decreas:12,dedic:[44,58,68],def:[7,11,16,28,40,52,56,68],default_q_command:36,defaultdict:[19,29],defin:[0,2,7,9,10,11,13,19,26,34,38,40,41,44,51,52,54,57,58,61,64,65,69],definit:[11,16,40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Tasks in the Background","Using the Web GUI","FireWorks Changelog","Modifying the FW Config","Contributing Code to FireWorks","Contributors","Controlling the directory and Worker of execution","Using the dataflow Firetasks","Canceling (pausing), restarting, and deleting Workflows","Tips for designing Firetasks, FireWorks, and Workflows","Handling Duplicates Automatically","Dynamic Workflows","Dealing with Failures and Crashes","Using the built-in FileIO Tasks","Using the built-in FilePad Tasks","Using FilePad for storing and retrieving files","Defining Jobs using Firetasks","fireworks package","fireworks.base_site package","fireworks.core package","fireworks.core.tests package","fireworks.examples package","fireworks.examples.custom_firetasks package","fireworks.examples.custom_firetasks.hello_world package","fireworks.examples.custom_firetasks.merge_task package","fireworks.examples.tutorial_examples package","fireworks.features package","fireworks.features.tests package","fireworks.flask_site package","fireworks.queue package","fireworks.scripts package","fireworks.tests package","fireworks.user_objects package","fireworks.user_objects.dupefinders package","fireworks.user_objects.firetasks package","fireworks.user_objects.firetasks.tests package","fireworks.user_objects.queue_adapters package","fireworks.user_objects.queue_adapters.tests package","fireworks.utilities package","fireworks.utilities.tests package","The Comprehensive Guide to Writing Firetasks with Python","Introduction to FireWorks (workflow software)","Installing FireWorks","Installation Notes on various clusters / supercomputing centers","Introductory Tutorial","License","Database administration commands","fireworks","\u201cPacking\u201d small jobs into larger ones with multi job launcher","Running FireWorks in \u201coffline\u201d mode on firewalled systems","Improving FireWorks performance","Assigning job priority","Using the PyTask","Using Python to command FireWorks","Writing Queue Adapters","Querying FireWorks and Workflows / Generating Reports","Launch Rockets through a queue","Advanced queue submission (reservation mode)","Five-minute quickstart","Reference material","Rerunning a Firework or Workflow","Using the ScriptTask to execute commands","Configuring Security","setup Module","Using the TemplateWriterTask to write files","Tracking an output file during execution","Updating values (e.g., directory paths) in the database","Virtualenv installation","Worker Tutorial","Creating Workflows"],titleterms:{"default":3,"new":[4,54],"static":52,"try":49,Adding:[4,10,15,56,65],FWs:[51,59],TLS:62,The:[9,11,13,40,41,61,64,69],Use:42,Using:[1,6,7,13,14,15,48,52,53,61,64],WFs:59,_launch_dir:6,_use_global_spec:[13,61,64],about:[49,65],access:[40,48],adapt:[4,54],add:[44,50,56,58,62],adder:11,addfilestask:14,adding:51,addit:[16,41,64],admin:62,administr:46,advanc:[57,64],advantag:49,after:[12,43,51],all:[58,60],altern:[3,6,40],anoth:51,app:[1,28],appendix:40,archiv:8,archivedirtask:13,argument:52,assign:51,authent:[1,62],automat:[10,12,44],background:0,background_task:26,backgroundtask:0,base:60,base_sit:18,basic:[40,41],befor:49,begin:9,beta:12,big:41,bird:41,bootstrap:16,breadth:51,bug:41,built:[13,14,41],cancel:[8,41],catastroph:12,categori:6,caus:12,center:43,central:41,chang:[3,40],changelog:[2,41],checkout:49,child:6,choos:[40,65],cite:41,cluster:43,code:[4,43,58,64,65],command:[46,51,53,61],commandlinetask:7,common_adapt:36,commonadapt:54,compat:4,comprehens:[40,41],compressdirtask:13,comput:41,conclus:57,config:3,configur:[56,62,68],connect:[42,43,68],contact:41,content:[17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39],continu:56,contribut:[4,41],contributor:5,control:6,core:[4,19,20],crash:12,creat:[16,51,62,69],criteria:4,custom:[10,16],custom_firetask:[22,23,24],dagflow:38,data:[11,52],databas:[12,43,46,62,66,68],dataflow:7,dataflow_task:34,deal:[12,57],defin:16,delet:[8,15],deletefilestask:14,deploi:41,deploy:41,design:[9,11,41],detect:10,develop:42,diamond:69,dict_mod:38,differ:41,directori:[6,64,66],displai:65,document:[4,41],downtim:49,dupefind:[10,26,33],dupefinder_exact:33,duplic:10,dure:[12,65],dynam:[11,40],dynamic_wf1:25,dynamic_wf2:25,end:9,enhanc:4,entir:8,env:68,error:[12,60],etc:4,exampl:[0,7,11,16,21,22,23,24,25,40,44,51,52,55,60,64,69],execut:[6,41,61,65],exist:[40,42],extern:3,eye:41,fail:46,failur:[12,41,57],featur:[4,26,27,41],fibonacci:11,file:[0,3,11,15,40,62,64,65],filedeletetask:13,fileio:13,fileio_task:34,filepad:[14,15,38],filepad_task:34,filetransfertask:13,filewritetask:13,fire:56,fireserv:[44,68],firetask:[3,4,7,9,16,25,34,35,40,41],firewal:49,firework:[2,4,6,8,9,12,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,41,42,43,44,47,49,50,51,53,55,56,57,58,59,60,64,65,68],first:51,five:58,fizzl:[12,60],flask:1,flask_sit:28,forc:46,foreachtask:7,forget:49,framework:1,frequenc:65,from:[52,54,68],further:50,fw_config:17,fw_report:26,fw_serial:38,fw_util:38,fwaction:[40,61],fwconfig:64,fworker:19,gener:55,getfilestask:14,git:42,gui:[1,58],guid:40,gunicorn:28,handl:10,happen:44,hello:40,hello_world:23,hello_world_run:23,hello_world_task:23,helper:28,heterogen:48,how:[3,4,16,50],identif:40,identifi:40,importdatatask:7,improv:[46,50],inclus:4,inconsist:12,index:50,individu:8,inform:[11,56],initi:44,instal:[42,43,67,68],interconnect:48,interpret:59,introduct:[16,25,67],introductori:44,introspect:26,job:[11,12,16,41,46,48,49,51,56,57],joindicttask:7,joinlisttask:7,just:[9,44],kei:62,keyword:59,larger:48,launch:[1,44,48,56,58,68],launcher:[48,56],launchpad:[19,40,44,62],learn:11,level:60,licens:[4,41,45],life:12,limit:[56,57],line:51,link:3,load:43,locat:3,lock:12,lpad_run:30,machin:[48,68],maintain:46,manag:41,mani:[44,57],manual:61,mark:46,master_test:31,materi:59,merge_task:24,messag:[40,60],metadata:50,method:[6,42],might:3,minut:58,misc:[41,43],mlaunch_run:30,mode:[42,44,49,56,57,68],model:41,modifi:[3,4,40,54],modul:[4,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,63],mongo_test:31,mongodb:42,monitor:[41,65],more:[0,56,64],multi:[9,48],multi_launch:26,multicor:48,multipl:[16,56],multiprocessing_test:31,name:6,nersc:43,next:[11,16,44,56,58,68,69],nline:65,nodefil:48,normal:12,note:[43,48,65],object:40,offlin:49,one:[0,51],ones:48,oper:12,option:[7,11,13,14,16,42,44,52,61,64,69],output:65,over:[48,51],overcom:56,overrid:57,own:[16,40,64],pack:48,packag:[3,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39],parallel:48,paramet:[0,3,7,12,13,14,52,57,61,68],parent:6,part:49,pass:[11,40],password:62,path:66,paus:8,pbs_newt_adapt:36,per:56,perform:[4,10,46,50],pip:42,pitfal:6,potenti:6,power:56,prepar:42,prevent:[10,57],priorit:51,prioriti:[41,51],probabl:3,product:41,pytask:52,python:[0,1,10,11,16,40,42,44,53,56,58,64,69],qlaunch:56,qlaunch_run:30,queri:[6,55],queue:[4,29,46,48,54,56,57],queue_adapt:[29,36,37],queue_launch:29,quick:11,quickstart:[41,58],rapid:56,rapidfir:[44,68],raw:6,recov:49,redirect:52,refer:[41,59],refresh:46,regist:40,remot:[13,42,56],report:[12,41,55],requir:[7,13,14,52,61],rerun:60,reserv:[46,56,57,59],reset:[44,68],resourc:[6,41],restart:[8,41],retriev:15,rlaunch_run:30,robust:49,rocket:[19,44,56,68],rocket_launch:19,run:[0,1,6,12,16,42,44,49,56,58,68],same:6,sampl:56,scratch:54,script:30,script_task:34,scripttask:61,secur:62,serial:48,server:[41,42,43],set:[0,18,51,61,64,67,68],setup:63,sever:48,shouldn:3,simpl:64,simplest:69,singl:[48,56],small:48,some:56,spec:[9,50,52,59],specif:68,specifi:3,ssl:62,start:[40,58],stat:26,state:59,statu:49,step:[11,40,44,56,58,68,69],store:15,style:4,sub:10,submiss:57,submit:[49,56],submodul:[17,18,19,20,23,24,25,26,27,28,29,30,31,33,34,35,36,37,38,39],subpackag:[17,19,21,22,26,32,34,36,38],substitut:64,supercomput:43,system:49,task:[0,13,14,16,20,31,60],templat:[40,54,64],templatewriter_task:34,templatewritertask:64,test:[4,20,27,31,35,37,39,42,43],test_common_adapt:37,test_dagflow:39,test_dataflow_task:35,test_fileio_task:35,test_filepad:39,test_filepad_task:35,test_firework:20,test_fw_config:31,test_fw_seri:39,test_introspect:27,test_launchpad:20,test_rocket:20,test_script_task:35,test_templatewriter_task:35,test_track:20,test_update_collect:39,test_workflow:31,through:56,tip:9,toe:41,too:57,topic:41,track:65,tracker:65,transfer:13,trivial:10,tuneup:46,tutori:[41,44,68],tutorial_exampl:25,tweak:50,type:41,unit:42,unittest_task:34,updat:[42,66],update_collect:38,url:18,usag:[41,56],user:62,user_object:[32,33,34,35,36,37,64],usernam:62,using:[6,16,51,56],util:[28,38,39],valu:66,variabl:[64,68],variou:43,verifi:43,via:[0,1,65,68],view:[18,41,65],virtualenv:[42,67],wai:[11,40],want:3,web:[1,58],what:[12,44],when:51,which:[6,65],wiggl:41,within:[40,57],worker:[6,41,68],workflow:[8,9,10,11,16,25,40,41,46,50,51,55,58,59,60,69],world:40,write:[16,40,54,64],wsgi:18,you:3,your:[16,40,41,43,62,64,68]}}) \ No newline at end of file diff --git a/docs/security_tutorial.html b/docs/security_tutorial.html index 42bebf8b6..27dbda290 100644 --- a/docs/security_tutorial.html +++ b/docs/security_tutorial.html @@ -6,7 +6,7 @@ - Configuring Security — FireWorks 1.9.0 documentation + Configuring Security — FireWorks 1.9.1 documentation @@ -36,7 +36,7 @@

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  • - + diff --git a/docs_rst/changelog.rst b/docs_rst/changelog.rst index 92c960256..9fa29b975 100644 --- a/docs_rst/changelog.rst +++ b/docs_rst/changelog.rst @@ -2,11 +2,15 @@ FireWorks Changelog =================== +**v1.9.1** + +* fix webgui JSON issue (D. Winston) +* add time_min to SLURM template (M. Horton) + **v1.9.0** * fix backward compatibility issues in using a MongoDB URI, added a separate "uri_mode" parameter. (thanks to M. Bercx for pointing out) - **v1.8.9** * added ability to connect via MongoDB URI and added 'lpad init -u' command. diff --git a/docs_rst/fireworks.flask_site.rst b/docs_rst/fireworks.flask_site.rst index 9a48c0e1f..fbc1ea950 100644 --- a/docs_rst/fireworks.flask_site.rst +++ b/docs_rst/fireworks.flask_site.rst @@ -28,6 +28,14 @@ fireworks.flask\_site.helpers module :undoc-members: :show-inheritance: +fireworks.flask\_site.util module +--------------------------------- + +.. automodule:: fireworks.flask_site.util + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/fireworks/__init__.py b/fireworks/__init__.py index ae0d3da12..28201e94c 100644 --- a/fireworks/__init__.py +++ b/fireworks/__init__.py @@ -1,6 +1,6 @@ import os -__version__ = '1.9.0' +__version__ = '1.9.1' FW_INSTALL_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) # These imports allow a much simpler import of core Fireworks functionality. diff --git a/setup.py b/setup.py index 2b663eef4..66f7a016d 100644 --- a/setup.py +++ b/setup.py @@ -17,7 +17,7 @@ if __name__ == "__main__": setup( name='FireWorks', - version="1.9.0", + version="1.9.1", description='FireWorks workflow software', long_description=open(os.path.join(module_dir, 'README.md')).read(), url='https://github.com/materialsproject/fireworks',