testing.yml

name: testing

on:
  push:
    branches:
      - master

  pull_request:
    branches:
      - master

jobs:
  lint:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2

    - name: Set up Python 3.8
      uses: actions/setup-python@v2
      with:
        python-version: 3.8

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r requirements-testing.txt

    - name: Lint with pycodestyle
      run: pycodestyle python_module

    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 --count --show-source --statistics python_module
        # exit-zero treats all errors as warnings.
        flake8 --count --exit-zero --max-complexity=20 --statistics python_module

  test_and_deploy:
    services:
      local_mongodb:
        image: mongo:4.0
        ports:
          - 27017:27017
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - uses: actions/checkout@v2

    - uses: conda-incubator/setup-miniconda@v2
      with:
        mamba-version: "*"
        activate-environment: workshop
        environment-file: binder/environment.yml

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r requirements.txt
        pip install -r requirements-docs.txt

    - name: Install workshop package
      run: pip install -e .

    - name: Install workshop data
      run: python ./binder/populate_nobel_database.py

    - name: Run Notebooks
      env:
        PMG_MAPI_KEY: ${{ secrets.MAPI_KEY }}
        MP_API_KEY: ${{ secrets.MP_API_KEY }}
        PR: ${{ github.event.pull_request.number }}
      run: python .github/run_notebooks.py

    - name: Build
      run: mkdocs build

    - name: Deploy
      uses: peaceiris/actions-gh-pages@v3
      if: github.ref == 'refs/heads/master'
      with:
        github_token: ${{ secrets.GITHUB_TOKEN }}
        publish_dir: ./site