From 7d7cd3b4fbc59e42f908f6474ad472c2291fc7f4 Mon Sep 17 00:00:00 2001
From: "Michael Pilosov, PhD"
 <40366263+mathematicalmichael@users.noreply.github.com>
Date: Sun, 21 Jan 2024 23:01:43 -0700
Subject: [PATCH] actions updates, experiments with 3.12 (#72)

* experiment with 3.12

* loosen pandas for 3.12

* build updates

* rename, try new build
---
 .github/workflows/build.yml | 27 +++++++++++++++------------
 .github/workflows/main.yml  | 20 ++++++++++----------
 setup.cfg                   |  4 ++--
 3 files changed, 27 insertions(+), 24 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 3d551a7..cef4b53 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -2,7 +2,7 @@ name: builds
 
 on:
   push:
-    branches: [ main ]
+    branches: [main]
     paths:
       - "src/**.py"
       - "tests/**.py"
@@ -10,7 +10,7 @@ on:
       - "setup.cfg"
       - ".github/workflows/build.yml"
   pull_request:
-    branches-ignore: '**docker**'
+    branches-ignore: ["**docker**"]
     paths:
       - "src/**.py"
       - "tests/**.py"
@@ -18,23 +18,23 @@ on:
       - "setup.cfg"
       - ".github/workflows/build.yml"
   schedule:
-      - cron: "0 0 1 * *"
+    - cron: "0 0 1 * *"
 
 jobs:
   build:
-    name: Test build process
+    name: packaging
     strategy:
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           fetch-depth: 0
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -44,7 +44,7 @@ jobs:
           pip install --upgrade wheel setuptools setuptools_scm
 
       - name: Inspect version info
-        run: | 
+        run: |
           python setup.py --version
           git describe --dirty --tags --long --match "*[0-9]*"
 
@@ -57,12 +57,15 @@ jobs:
         run: |
           pip install -e .
           pip uninstall -y mud
- 
+
       - name: Test build
         run: |
           python setup.py sdist bdist_wheel
-          pip uninstall -y mud
 
+      - name: New build
+        run: |
+          pip install build
+          python -m build --sdist --wheel
 
   style:
     name: Enforce style
@@ -72,12 +75,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           fetch-depth: 1
 
       - name: setup
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
 
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index dbbfaff..153963c 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -10,7 +10,7 @@ on:
       - "setup.cfg"
       - ".github/workflows/main.yml"
   pull_request:
-    branches-ignore: "**docker**"
+    branches-ignore: ["**docker**"]
     paths:
       - "src/**.py"
       - "tests/**.py"
@@ -22,19 +22,19 @@ on:
 
 jobs:
   unit-tests:
-    name: Run unit tests
+    name: pytest
     strategy:
       matrix:
-        python-version: ["3.7", "3.10", "3.11"]
+        python-version: ["3.7", "3.10", "3.11", "3.12"]
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           fetch-depth: 0
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -47,25 +47,25 @@ jobs:
         run: pytest
 
       - name: Upload coverage to coveralls.io
-        if: ${{ matrix.python-version }} == 3.9
+        if: ${{ matrix.python-version }} == 3.10
         run: coveralls --service=github
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
   integration-tests:
-    name: Run integration tests
+    name: cli examples
     strategy:
       matrix:
-        python-version: ["3.9"]
+        python-version: ["3.10", "3.12"]
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           fetch-depth: 1
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
 
diff --git a/setup.cfg b/setup.cfg
index 30551d0..7efdeb6 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -32,7 +32,7 @@ package_dir =
 # Add here dependencies of your project (semicolon/line-separated), e.g.
 install_requires =
     importlib-metadata; python_version<"3.10"
-    numpy>=1.20,<1.25
+    numpy>=1.20,<1.27
     scipy>=1.2,<2.0
     matplotlib>=1.0,<4.0
     scikit-learn>=1.0,<2.0
@@ -67,7 +67,7 @@ examples =
     click
     tqdm
     prettytable
-    pandas>=1.2,<2.0
+    pandas>=1.2,<3.0
     wget