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Issues: mattb112885/clusterDbAnalysis

19 Open 56 Closed
19 Open 56 Closed
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Issues list

Error in convertGenbank2table.py if /pseudo in genbank
#81 opened Dec 11, 2016 by michoug
5
sqlite3.OperationalError
#72 opened Jan 25, 2016 by spaver
3
Error in gene neighborhoods
#70 opened Nov 16, 2015 by leoliuzhenshan
5
Improve neighborhood getting for tblastn hits enhancement
#62 opened Apr 11, 2014 by mattb112885
Genbank file issues with spliced proteins bug
#59 opened Feb 27, 2014 by nick-youngblut
5
FastTree missing from VM
#58 opened Feb 11, 2014 by mattb112885
orthomcl wrapper singleton issue bug
#56 opened Feb 1, 2014 by mattb112885
Change file input and output from sanatised organism name to (sanatized) organism ID
#48 opened May 22, 2013 by JamesRH
3
Remove old implicit shell script calls and replace with library functions Cleanup
#37 opened Mar 20, 2013 by mattb112885
Need to move other things that make up their own scoring schemes to the standard library functions bug enhancement
#36 opened Mar 20, 2013 by mattb112885
convertGenbankToTable needs to check for taxID consistency in concatinated genbank file bug
#35 opened Mar 17, 2013 by mattb112885
1
Neighborhood-based clustering enhancement Long-term
#33 opened Mar 7, 2013 by mattb112885
1
Downloading from NCBI should default to completed genomes if both complete and incomplete are available (but doesn't) bug
#31 opened Mar 1, 2013 by mattb112885
1
Switch to argparse and use argcomplete to deal with options with fixed list of possibilities enhancement Long-term
#28 opened Jan 12, 2013 by mattb112885
Functions limited to only singular inputs should have command-line options Cleanup
#24 opened Nov 30, 2012 by mattb112885
Need option to add filtering (SEG or DUST) to automatically-generated BLAST databases enhancement
#21 opened Nov 7, 2012 by mattb112885
2
modularizing commonly used functions enhancement Long-term
#17 opened Oct 26, 2012 by JamesRH
2
Feature request: Find missing organisms in a cluster enhancement
#4 opened Sep 21, 2012 by mattb112885
Output formats for tables need documentation within the function enhancement question
#2 opened Sep 21, 2012 by mattb112885
@mattb112885
1
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