Is there any parameters to increase the retrived data

[lilinzhou]

Hi,

I have a fastq.gz file of approximately 35Gb (.gz files cannot be successfully decompressed), which sequenced by third-generation long reads sequencing platform. However, after using fastqwiper (Case 3) for recovery, I only obtained about 700MB of data, and the summary file indicates that only 0.15% was recovered. I would like to ask if there is any ways to recover more data. If there are truncated SEQ lines, that would be acceptable even other lines are incomplete (as I see the BAD SEQ lines only account for 0.2% in the summary file).
summary.txt

Best
Linzhou

[tm4zza]

Dear Linzhou,
after a quick look at the summary.txt, It would be useful to look at your fastq.gz file. Can you share it with us?

[lilinzhou]

OK, I will contact you with e-mail later.

[lilinzhou]

Hi Tommaso,

is this mail ([email protected]) available now? I send the data to this mail, but I am not sure if you have received my message.

Best
Linzhou

[tm4zza]

Hi Linzhou, Yes, I've got your email. Hope to be able to work with your file over this week end and give you a feedback soon. Best regards, Tommaso

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________________________________ From: Charlie ***@***.***> Sent: Friday, December 13, 2024 7:49 AM To: mazzalab/fastqwiper ***@***.***> Cc: Tommaso Mazza ***@***.***>; Comment ***@***.***> Subject: Re: [mazzalab/fastqwiper] Is there any parameters to increase the retrived data (Issue #32) Hi Tommaso, is this mail ***@***.******@***.***>) available now? I send the data to this mail, but I am not sure if you have received my message. Best Linzhou — Reply to this email directly, view it on GitHub<#32 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQTAJCCIDZC4LXK4LICVLOL2FJ7QZAVCNFSM6AAAAABS7QLHXKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNBQGY3TCMJSGA>. You are receiving this because you commented.