Defining 'extracellular' molecules #111
Comments
|
Hi, hope my question was clear - please do let me know if you need more details on the problem. Thanks! |
|
Hello srGit-lab, |
cnlbob
added a commit
that referenced
this issue
Feb 22, 2020
In response to GitHub report: Defining 'extracellular' molecules #111 The CellBlender example for Periodic Boundary Conditions had been implemented with an Export Script to generate the "PERIODIC BOX" MDL required to run the example. Interestingly, there was a CellBlender Panel for Periodic Boundary Conditions, but the data was not being used. This commit adds the code needed to use the Periodic Boundary Conditions properties when exporting and to also store and retrieve them from the Data Model. The format for the MDL output was taken from the example. Note that this commit has not been tested in any cases but the example.
|
Hello, Can I please quickly ask if the issue (more proper export of periodic boundary conditions) is only in Cellblender GUI or if it also affected the MCell binary. Thanks. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi, I have an object representing a tissue model. Rather than creating an entire structure of objects, I have specified a periodic boundary with just one cylinder object inside it. With this object, I can define molecules that are inside the object. But I am not quite clear on how to define the 'extracellular' molecules - these molecules will be the 'medium' in the structure, and will be extended by the periodic boundary as well.
I tried
-Cylinder[ALL]andWorld-Cylinder[ALL]- both give errors in Cellblender.I hope the question is clear enough. Thanks!
The text was updated successfully, but these errors were encountered: