Refseq_Insd name search.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Comparing refseq names vs. names for in INSD for missing species that can be made into new refseq\n",
    "### Down load accession lists from refseq 16S targetted loci project and accessions lists from INSD for 16S rRNA records from type. \n",
    "### Run srcchk to extract names and type-material"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>KY471046.1</td>\n",
       "      <td>Oceanobacillus massiliensis str. N'diop</td>\n",
       "      <td>type strain of Oceanobacillus massiliensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>KY471044.1</td>\n",
       "      <td>Rhodococcus cerastii</td>\n",
       "      <td>type strain of Rhodococcus cerastii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>KY471043.1</td>\n",
       "      <td>Halopseudomonas pelagia</td>\n",
       "      <td>type strain of Pseudomonas pelagia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>KY471042.1</td>\n",
       "      <td>Psychrobacter okhotskensis</td>\n",
       "      <td>type strain of Psychrobacter okhotskensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>KY471041.1</td>\n",
       "      <td>Psychrobacter nivimaris</td>\n",
       "      <td>type strain of Psychrobacter nivimaris</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>KY471040.1</td>\n",
       "      <td>Halomonas titanicae BH1</td>\n",
       "      <td>type strain of Halomonas titanicae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>KY471039.1</td>\n",
       "      <td>Cobetia crustatorum</td>\n",
       "      <td>type strain of Cobetia crustatorum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>KY471038.1</td>\n",
       "      <td>Shewanella vesiculosa</td>\n",
       "      <td>type strain of Shewanella vesiculosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>KY471036.1</td>\n",
       "      <td>Shewanella basaltis</td>\n",
       "      <td>type strain of Shewanella basaltis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>KY471034.1</td>\n",
       "      <td>Pseudoalteromonas translucida KMM 520</td>\n",
       "      <td>type strain of Pseudoalteromonas translucida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>KY471033.1</td>\n",
       "      <td>Pseudoalteromonas haloplanktis ATCC 14393</td>\n",
       "      <td>type strain of Pseudoalteromonas haloplanktis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>KY471032.1</td>\n",
       "      <td>Pseudoalteromonas agarivorans DSM 14585</td>\n",
       "      <td>type strain of Pseudoalteromonas agarivorans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>KY471031.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>type strain of Pseudoalteromonas fuliginea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>KY471030.1</td>\n",
       "      <td>Qipengyuania citrea</td>\n",
       "      <td>type strain of Erythrobacter citreus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>KY471029.1</td>\n",
       "      <td>Sulfitobacter pontiacus</td>\n",
       "      <td>type strain of Sulfitobacter pontiacus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>KY471028.1</td>\n",
       "      <td>Sulfitobacter dubius</td>\n",
       "      <td>type strain of Sulfitobacter dubius</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>KY471027.1</td>\n",
       "      <td>Paracoccus carotinifaciens</td>\n",
       "      <td>type strain of Paracoccus carotinifaciens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>KY471026.1</td>\n",
       "      <td>Ciceribacter selenitireducens</td>\n",
       "      <td>type strain of Rhizobium selenitireducens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>KY471025.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>type strain of Aurantimonas coralicida</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "     accession                                   organism  \\\n",
       "1   ON795919.1                     Bacillus licheniformis   \n",
       "2   KY471046.1    Oceanobacillus massiliensis str. N'diop   \n",
       "3   KY471044.1                       Rhodococcus cerastii   \n",
       "4   KY471043.1                    Halopseudomonas pelagia   \n",
       "5   KY471042.1                 Psychrobacter okhotskensis   \n",
       "6   KY471041.1                    Psychrobacter nivimaris   \n",
       "7   KY471040.1                    Halomonas titanicae BH1   \n",
       "8   KY471039.1                        Cobetia crustatorum   \n",
       "9   KY471038.1                      Shewanella vesiculosa   \n",
       "10  KY471036.1                        Shewanella basaltis   \n",
       "11  KY471034.1      Pseudoalteromonas translucida KMM 520   \n",
       "12  KY471033.1  Pseudoalteromonas haloplanktis ATCC 14393   \n",
       "13  KY471032.1    Pseudoalteromonas agarivorans DSM 14585   \n",
       "14  KY471031.1                Pseudoalteromonas fuliginea   \n",
       "15  KY471030.1                        Qipengyuania citrea   \n",
       "16  KY471029.1                    Sulfitobacter pontiacus   \n",
       "17  KY471028.1                       Sulfitobacter dubius   \n",
       "18  KY471027.1                 Paracoccus carotinifaciens   \n",
       "19  KY471026.1              Ciceribacter selenitireducens   \n",
       "20  KY471025.1                    Aurantimonas coralicida   \n",
       "\n",
       "                                             type  \n",
       "1           type strain of Bacillus licheniformis  \n",
       "2      type strain of Oceanobacillus massiliensis  \n",
       "3             type strain of Rhodococcus cerastii  \n",
       "4              type strain of Pseudomonas pelagia  \n",
       "5       type strain of Psychrobacter okhotskensis  \n",
       "6          type strain of Psychrobacter nivimaris  \n",
       "7              type strain of Halomonas titanicae  \n",
       "8              type strain of Cobetia crustatorum  \n",
       "9            type strain of Shewanella vesiculosa  \n",
       "10             type strain of Shewanella basaltis  \n",
       "11   type strain of Pseudoalteromonas translucida  \n",
       "12  type strain of Pseudoalteromonas haloplanktis  \n",
       "13   type strain of Pseudoalteromonas agarivorans  \n",
       "14     type strain of Pseudoalteromonas fuliginea  \n",
       "15           type strain of Erythrobacter citreus  \n",
       "16         type strain of Sulfitobacter pontiacus  \n",
       "17            type strain of Sulfitobacter dubius  \n",
       "18      type strain of Paracoccus carotinifaciens  \n",
       "19      type strain of Rhizobium selenitireducens  \n",
       "20         type strain of Aurantimonas coralicida  "
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "insdnames = (r'C:\\Users\\mcveigh\\Documents\\PythonPC\\missing_names')\n",
    "insdnames_df = pd.read_csv(insdnames,\n",
    "                       sep='\\t',\n",
    "                       index_col=None,\n",
    "                       low_memory=False,\n",
    "                       usecols=[0,1,2],\n",
    "                       header=None,\n",
    "                       names=[\"accession\", \"organism\",\"type\"])\n",
    "insdnames_df = insdnames_df[1:]\n",
    "insdnames_df.head(20)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "      <th>binomial</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>KY471046.1</td>\n",
       "      <td>Oceanobacillus massiliensis str. N'diop</td>\n",
       "      <td>type strain of Oceanobacillus massiliensis</td>\n",
       "      <td>Oceanobacillus massiliensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>KY471044.1</td>\n",
       "      <td>Rhodococcus cerastii</td>\n",
       "      <td>type strain of Rhodococcus cerastii</td>\n",
       "      <td>Rhodococcus cerastii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>KY471043.1</td>\n",
       "      <td>Halopseudomonas pelagia</td>\n",
       "      <td>type strain of Pseudomonas pelagia</td>\n",
       "      <td>Halopseudomonas pelagia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>KY471042.1</td>\n",
       "      <td>Psychrobacter okhotskensis</td>\n",
       "      <td>type strain of Psychrobacter okhotskensis</td>\n",
       "      <td>Psychrobacter okhotskensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>KY471041.1</td>\n",
       "      <td>Psychrobacter nivimaris</td>\n",
       "      <td>type strain of Psychrobacter nivimaris</td>\n",
       "      <td>Psychrobacter nivimaris</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>KY471040.1</td>\n",
       "      <td>Halomonas titanicae BH1</td>\n",
       "      <td>type strain of Halomonas titanicae</td>\n",
       "      <td>Halomonas titanicae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>KY471039.1</td>\n",
       "      <td>Cobetia crustatorum</td>\n",
       "      <td>type strain of Cobetia crustatorum</td>\n",
       "      <td>Cobetia crustatorum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>KY471038.1</td>\n",
       "      <td>Shewanella vesiculosa</td>\n",
       "      <td>type strain of Shewanella vesiculosa</td>\n",
       "      <td>Shewanella vesiculosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>KY471036.1</td>\n",
       "      <td>Shewanella basaltis</td>\n",
       "      <td>type strain of Shewanella basaltis</td>\n",
       "      <td>Shewanella basaltis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>KY471034.1</td>\n",
       "      <td>Pseudoalteromonas translucida KMM 520</td>\n",
       "      <td>type strain of Pseudoalteromonas translucida</td>\n",
       "      <td>Pseudoalteromonas translucida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>KY471033.1</td>\n",
       "      <td>Pseudoalteromonas haloplanktis ATCC 14393</td>\n",
       "      <td>type strain of Pseudoalteromonas haloplanktis</td>\n",
       "      <td>Pseudoalteromonas haloplanktis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>KY471032.1</td>\n",
       "      <td>Pseudoalteromonas agarivorans DSM 14585</td>\n",
       "      <td>type strain of Pseudoalteromonas agarivorans</td>\n",
       "      <td>Pseudoalteromonas agarivorans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>KY471031.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>type strain of Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>KY471030.1</td>\n",
       "      <td>Qipengyuania citrea</td>\n",
       "      <td>type strain of Erythrobacter citreus</td>\n",
       "      <td>Qipengyuania citrea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>KY471029.1</td>\n",
       "      <td>Sulfitobacter pontiacus</td>\n",
       "      <td>type strain of Sulfitobacter pontiacus</td>\n",
       "      <td>Sulfitobacter pontiacus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>KY471028.1</td>\n",
       "      <td>Sulfitobacter dubius</td>\n",
       "      <td>type strain of Sulfitobacter dubius</td>\n",
       "      <td>Sulfitobacter dubius</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>KY471027.1</td>\n",
       "      <td>Paracoccus carotinifaciens</td>\n",
       "      <td>type strain of Paracoccus carotinifaciens</td>\n",
       "      <td>Paracoccus carotinifaciens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>KY471026.1</td>\n",
       "      <td>Ciceribacter selenitireducens</td>\n",
       "      <td>type strain of Rhizobium selenitireducens</td>\n",
       "      <td>Ciceribacter selenitireducens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>KY471025.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>type strain of Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>KY471024.1</td>\n",
       "      <td>Brevundimonas bullata</td>\n",
       "      <td>type strain of Brevundimonas bullata</td>\n",
       "      <td>Brevundimonas bullata</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>KY471023.1</td>\n",
       "      <td>Exiguobacterium mexicanum</td>\n",
       "      <td>type strain of Exiguobacterium mexicanum</td>\n",
       "      <td>Exiguobacterium mexicanum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>KY471022.1</td>\n",
       "      <td>Peribacillus psychrosaccharolyticus ATCC 23296</td>\n",
       "      <td>type strain of Bacillus psychrosaccharolyticus</td>\n",
       "      <td>Peribacillus psychrosaccharolyticus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>KY471021.1</td>\n",
       "      <td>Metabacillus galliciensis</td>\n",
       "      <td>type strain of Bacillus galliciensis</td>\n",
       "      <td>Metabacillus galliciensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>KY471020.1</td>\n",
       "      <td>Microbacterium oleivorans</td>\n",
       "      <td>type strain of Microbacterium oleivorans</td>\n",
       "      <td>Microbacterium oleivorans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>ON945577.1</td>\n",
       "      <td>Haloferax namakaokahaiae</td>\n",
       "      <td>type strain of Haloferax namakaokahaiae</td>\n",
       "      <td>Haloferax namakaokahaiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>ON927072.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>ON927071.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>type strain of Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>MW970396.1</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>type strain of Photocaulis sulfatitolerans</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>MW970386.1</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>type strain of Photocaulis rubescens</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12557</th>\n",
       "      <td>X84811.1</td>\n",
       "      <td>Planktothrix rubescens NIVA-CYA 18</td>\n",
       "      <td>type strain of Planktothrix rubescens</td>\n",
       "      <td>Planktothrix rubescens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12558</th>\n",
       "      <td>X89406.1</td>\n",
       "      <td>Methanothermobacter wolfeii</td>\n",
       "      <td>type strain of Methanothermobacter wolfeii</td>\n",
       "      <td>Methanothermobacter wolfeii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12559</th>\n",
       "      <td>X70648.1</td>\n",
       "      <td>Staphylococcus aureus</td>\n",
       "      <td>type strain of Staphylococcus aureus</td>\n",
       "      <td>Staphylococcus aureus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12560</th>\n",
       "      <td>U50418.1</td>\n",
       "      <td>Ezakiella coagulans</td>\n",
       "      <td>type strain of Bacteroides coagulans</td>\n",
       "      <td>Ezakiella coagulans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12561</th>\n",
       "      <td>U02911.1</td>\n",
       "      <td>Staphylococcus auricularis</td>\n",
       "      <td>type strain of Staphylococcus auricularis</td>\n",
       "      <td>Staphylococcus auricularis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12562</th>\n",
       "      <td>U02906.1</td>\n",
       "      <td>Cutibacterium granulosum DSM 20700</td>\n",
       "      <td>type strain of Propionibacterium granulosum</td>\n",
       "      <td>Cutibacterium granulosum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12563</th>\n",
       "      <td>U02904.1</td>\n",
       "      <td>Cutibacterium acnes</td>\n",
       "      <td>type strain of Cutibacterium acnes</td>\n",
       "      <td>Cutibacterium acnes</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12564</th>\n",
       "      <td>U02902.1</td>\n",
       "      <td>Neisseria polysaccharea</td>\n",
       "      <td>type strain of Neisseria polysaccharea</td>\n",
       "      <td>Neisseria polysaccharea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12565</th>\n",
       "      <td>U02897.1</td>\n",
       "      <td>Haemophilus influenzae</td>\n",
       "      <td>type strain of Haemophilus influenzae</td>\n",
       "      <td>Haemophilus influenzae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12566</th>\n",
       "      <td>U02895.1</td>\n",
       "      <td>Corynebacterium xerosis</td>\n",
       "      <td>type strain of Corynebacterium xerosis</td>\n",
       "      <td>Corynebacterium xerosis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12567</th>\n",
       "      <td>U20153.1</td>\n",
       "      <td>Methanosarcina siciliae</td>\n",
       "      <td>type strain of Methanosarcina siciliae</td>\n",
       "      <td>Methanosarcina siciliae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12568</th>\n",
       "      <td>U20150.1</td>\n",
       "      <td>Methanosarcina vacuolata</td>\n",
       "      <td>type strain of Methanosarcina vacuolata</td>\n",
       "      <td>Methanosarcina vacuolata</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12569</th>\n",
       "      <td>U20148.1</td>\n",
       "      <td>Methanolobus bombayensis</td>\n",
       "      <td>type strain of Methanolobus bombayensis</td>\n",
       "      <td>Methanolobus bombayensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12570</th>\n",
       "      <td>U10862.1</td>\n",
       "      <td>Vibrio vulnificus NBRC 15645 = ATCC 27562</td>\n",
       "      <td>type strain of Vibrio vulnificus</td>\n",
       "      <td>Vibrio vulnificus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12571</th>\n",
       "      <td>U04657.1</td>\n",
       "      <td>Haploplasma axanthum</td>\n",
       "      <td>type strain of Acholeplasma axanthum</td>\n",
       "      <td>Haploplasma axanthum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12572</th>\n",
       "      <td>U04656.1</td>\n",
       "      <td>Mycoplasmopsis bovirhinis</td>\n",
       "      <td>type strain of Mycoplasma bovirhinis</td>\n",
       "      <td>Mycoplasmopsis bovirhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12573</th>\n",
       "      <td>U04655.1</td>\n",
       "      <td>Metamycoplasma canadense</td>\n",
       "      <td>type strain of Mycoplasma canadense</td>\n",
       "      <td>Metamycoplasma canadense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12574</th>\n",
       "      <td>U04648.1</td>\n",
       "      <td>Mycoplasma mycoides subsp. capri</td>\n",
       "      <td>type strain of Mycoplasma mycoides subsp. capri</td>\n",
       "      <td>Mycoplasma mycoides</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12575</th>\n",
       "      <td>U04645.1</td>\n",
       "      <td>Mycoplasmopsis synoviae</td>\n",
       "      <td>type strain of Mycoplasma synoviae</td>\n",
       "      <td>Mycoplasmopsis synoviae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12576</th>\n",
       "      <td>U04644.1</td>\n",
       "      <td>Metamycoplasma sualvi</td>\n",
       "      <td>type strain of Mycoplasma sualvi</td>\n",
       "      <td>Metamycoplasma sualvi</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12577</th>\n",
       "      <td>L01479.1</td>\n",
       "      <td>Thiomicrospira thyasirae</td>\n",
       "      <td>type strain of Thiomicrospira thyasirae</td>\n",
       "      <td>Thiomicrospira thyasirae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12578</th>\n",
       "      <td>L01478.1</td>\n",
       "      <td>Thiomicrospira thyasirae</td>\n",
       "      <td>type strain of Thiomicrospira thyasirae</td>\n",
       "      <td>Thiomicrospira thyasirae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12579</th>\n",
       "      <td>M88720.1</td>\n",
       "      <td>Spirochaeta isovalerica</td>\n",
       "      <td>type strain of Spirochaeta isovalerica</td>\n",
       "      <td>Spirochaeta isovalerica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12580</th>\n",
       "      <td>M59072.1</td>\n",
       "      <td>Rhodovibrio sodomensis</td>\n",
       "      <td>type strain of Rhodovibrio sodomensis</td>\n",
       "      <td>Rhodovibrio sodomensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12581</th>\n",
       "      <td>M55496.1</td>\n",
       "      <td>Rhodopseudomonas palustris</td>\n",
       "      <td>type strain of Rhodopseudomonas palustris</td>\n",
       "      <td>Rhodopseudomonas palustris</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12582</th>\n",
       "      <td>L10658.1</td>\n",
       "      <td>Geotoga petraea</td>\n",
       "      <td>type strain of Geotoga petraea</td>\n",
       "      <td>Geotoga petraea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12583</th>\n",
       "      <td>M62695.1</td>\n",
       "      <td>Fibrobacter intestinalis</td>\n",
       "      <td>type strain of Fibrobacter intestinalis</td>\n",
       "      <td>Fibrobacter intestinalis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12584</th>\n",
       "      <td>M55493.1</td>\n",
       "      <td>Erythrobacter longus</td>\n",
       "      <td>type strain of Erythrobacter longus</td>\n",
       "      <td>Erythrobacter longus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12585</th>\n",
       "      <td>M34417.1</td>\n",
       "      <td>Desulfosporosinus orientis DSM 765</td>\n",
       "      <td>type strain of Desulfosporosinus orientis</td>\n",
       "      <td>Desulfosporosinus orientis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12586</th>\n",
       "      <td>M83796.1</td>\n",
       "      <td>Brevundimonas bacteroides</td>\n",
       "      <td>type strain of Brevundimonas bacteroides</td>\n",
       "      <td>Brevundimonas bacteroides</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>12586 rows × 4 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "        accession                                        organism  \\\n",
       "1      ON795919.1                          Bacillus licheniformis   \n",
       "2      KY471046.1         Oceanobacillus massiliensis str. N'diop   \n",
       "3      KY471044.1                            Rhodococcus cerastii   \n",
       "4      KY471043.1                         Halopseudomonas pelagia   \n",
       "5      KY471042.1                      Psychrobacter okhotskensis   \n",
       "6      KY471041.1                         Psychrobacter nivimaris   \n",
       "7      KY471040.1                         Halomonas titanicae BH1   \n",
       "8      KY471039.1                             Cobetia crustatorum   \n",
       "9      KY471038.1                           Shewanella vesiculosa   \n",
       "10     KY471036.1                             Shewanella basaltis   \n",
       "11     KY471034.1           Pseudoalteromonas translucida KMM 520   \n",
       "12     KY471033.1       Pseudoalteromonas haloplanktis ATCC 14393   \n",
       "13     KY471032.1         Pseudoalteromonas agarivorans DSM 14585   \n",
       "14     KY471031.1                     Pseudoalteromonas fuliginea   \n",
       "15     KY471030.1                             Qipengyuania citrea   \n",
       "16     KY471029.1                         Sulfitobacter pontiacus   \n",
       "17     KY471028.1                            Sulfitobacter dubius   \n",
       "18     KY471027.1                      Paracoccus carotinifaciens   \n",
       "19     KY471026.1                   Ciceribacter selenitireducens   \n",
       "20     KY471025.1                         Aurantimonas coralicida   \n",
       "21     KY471024.1                           Brevundimonas bullata   \n",
       "22     KY471023.1                       Exiguobacterium mexicanum   \n",
       "23     KY471022.1  Peribacillus psychrosaccharolyticus ATCC 23296   \n",
       "24     KY471021.1                       Metabacillus galliciensis   \n",
       "25     KY471020.1                       Microbacterium oleivorans   \n",
       "26     ON945577.1                        Haloferax namakaokahaiae   \n",
       "27     ON927072.1                      Streptomyces broussonetiae   \n",
       "28     ON927071.1                      Streptomyces phaeolivaceus   \n",
       "29     MW970396.1                     Photocaulis sulfatitolerans   \n",
       "30     MW970386.1                           Photocaulis rubescens   \n",
       "...           ...                                             ...   \n",
       "12557    X84811.1              Planktothrix rubescens NIVA-CYA 18   \n",
       "12558    X89406.1                     Methanothermobacter wolfeii   \n",
       "12559    X70648.1                           Staphylococcus aureus   \n",
       "12560    U50418.1                             Ezakiella coagulans   \n",
       "12561    U02911.1                      Staphylococcus auricularis   \n",
       "12562    U02906.1              Cutibacterium granulosum DSM 20700   \n",
       "12563    U02904.1                             Cutibacterium acnes   \n",
       "12564    U02902.1                         Neisseria polysaccharea   \n",
       "12565    U02897.1                          Haemophilus influenzae   \n",
       "12566    U02895.1                         Corynebacterium xerosis   \n",
       "12567    U20153.1                         Methanosarcina siciliae   \n",
       "12568    U20150.1                        Methanosarcina vacuolata   \n",
       "12569    U20148.1                        Methanolobus bombayensis   \n",
       "12570    U10862.1       Vibrio vulnificus NBRC 15645 = ATCC 27562   \n",
       "12571    U04657.1                            Haploplasma axanthum   \n",
       "12572    U04656.1                       Mycoplasmopsis bovirhinis   \n",
       "12573    U04655.1                        Metamycoplasma canadense   \n",
       "12574    U04648.1                Mycoplasma mycoides subsp. capri   \n",
       "12575    U04645.1                         Mycoplasmopsis synoviae   \n",
       "12576    U04644.1                           Metamycoplasma sualvi   \n",
       "12577    L01479.1                        Thiomicrospira thyasirae   \n",
       "12578    L01478.1                        Thiomicrospira thyasirae   \n",
       "12579    M88720.1                         Spirochaeta isovalerica   \n",
       "12580    M59072.1                          Rhodovibrio sodomensis   \n",
       "12581    M55496.1                      Rhodopseudomonas palustris   \n",
       "12582    L10658.1                                 Geotoga petraea   \n",
       "12583    M62695.1                        Fibrobacter intestinalis   \n",
       "12584    M55493.1                            Erythrobacter longus   \n",
       "12585    M34417.1              Desulfosporosinus orientis DSM 765   \n",
       "12586    M83796.1                       Brevundimonas bacteroides   \n",
       "\n",
       "                                                  type  \\\n",
       "1                type strain of Bacillus licheniformis   \n",
       "2           type strain of Oceanobacillus massiliensis   \n",
       "3                  type strain of Rhodococcus cerastii   \n",
       "4                   type strain of Pseudomonas pelagia   \n",
       "5            type strain of Psychrobacter okhotskensis   \n",
       "6               type strain of Psychrobacter nivimaris   \n",
       "7                   type strain of Halomonas titanicae   \n",
       "8                   type strain of Cobetia crustatorum   \n",
       "9                 type strain of Shewanella vesiculosa   \n",
       "10                  type strain of Shewanella basaltis   \n",
       "11        type strain of Pseudoalteromonas translucida   \n",
       "12       type strain of Pseudoalteromonas haloplanktis   \n",
       "13        type strain of Pseudoalteromonas agarivorans   \n",
       "14          type strain of Pseudoalteromonas fuliginea   \n",
       "15                type strain of Erythrobacter citreus   \n",
       "16              type strain of Sulfitobacter pontiacus   \n",
       "17                 type strain of Sulfitobacter dubius   \n",
       "18           type strain of Paracoccus carotinifaciens   \n",
       "19           type strain of Rhizobium selenitireducens   \n",
       "20              type strain of Aurantimonas coralicida   \n",
       "21                type strain of Brevundimonas bullata   \n",
       "22            type strain of Exiguobacterium mexicanum   \n",
       "23      type strain of Bacillus psychrosaccharolyticus   \n",
       "24                type strain of Bacillus galliciensis   \n",
       "25            type strain of Microbacterium oleivorans   \n",
       "26             type strain of Haloferax namakaokahaiae   \n",
       "27           type strain of Streptomyces broussonetiae   \n",
       "28           type strain of Streptomyces phaeolivaceus   \n",
       "29          type strain of Photocaulis sulfatitolerans   \n",
       "30                type strain of Photocaulis rubescens   \n",
       "...                                                ...   \n",
       "12557            type strain of Planktothrix rubescens   \n",
       "12558       type strain of Methanothermobacter wolfeii   \n",
       "12559             type strain of Staphylococcus aureus   \n",
       "12560             type strain of Bacteroides coagulans   \n",
       "12561        type strain of Staphylococcus auricularis   \n",
       "12562      type strain of Propionibacterium granulosum   \n",
       "12563               type strain of Cutibacterium acnes   \n",
       "12564           type strain of Neisseria polysaccharea   \n",
       "12565            type strain of Haemophilus influenzae   \n",
       "12566           type strain of Corynebacterium xerosis   \n",
       "12567           type strain of Methanosarcina siciliae   \n",
       "12568          type strain of Methanosarcina vacuolata   \n",
       "12569          type strain of Methanolobus bombayensis   \n",
       "12570                 type strain of Vibrio vulnificus   \n",
       "12571             type strain of Acholeplasma axanthum   \n",
       "12572             type strain of Mycoplasma bovirhinis   \n",
       "12573              type strain of Mycoplasma canadense   \n",
       "12574  type strain of Mycoplasma mycoides subsp. capri   \n",
       "12575               type strain of Mycoplasma synoviae   \n",
       "12576                 type strain of Mycoplasma sualvi   \n",
       "12577          type strain of Thiomicrospira thyasirae   \n",
       "12578          type strain of Thiomicrospira thyasirae   \n",
       "12579           type strain of Spirochaeta isovalerica   \n",
       "12580            type strain of Rhodovibrio sodomensis   \n",
       "12581        type strain of Rhodopseudomonas palustris   \n",
       "12582                   type strain of Geotoga petraea   \n",
       "12583          type strain of Fibrobacter intestinalis   \n",
       "12584              type strain of Erythrobacter longus   \n",
       "12585        type strain of Desulfosporosinus orientis   \n",
       "12586         type strain of Brevundimonas bacteroides   \n",
       "\n",
       "                                  binomial  \n",
       "1                   Bacillus licheniformis  \n",
       "2              Oceanobacillus massiliensis  \n",
       "3                     Rhodococcus cerastii  \n",
       "4                  Halopseudomonas pelagia  \n",
       "5               Psychrobacter okhotskensis  \n",
       "6                  Psychrobacter nivimaris  \n",
       "7                      Halomonas titanicae  \n",
       "8                      Cobetia crustatorum  \n",
       "9                    Shewanella vesiculosa  \n",
       "10                     Shewanella basaltis  \n",
       "11           Pseudoalteromonas translucida  \n",
       "12          Pseudoalteromonas haloplanktis  \n",
       "13           Pseudoalteromonas agarivorans  \n",
       "14             Pseudoalteromonas fuliginea  \n",
       "15                     Qipengyuania citrea  \n",
       "16                 Sulfitobacter pontiacus  \n",
       "17                    Sulfitobacter dubius  \n",
       "18              Paracoccus carotinifaciens  \n",
       "19           Ciceribacter selenitireducens  \n",
       "20                 Aurantimonas coralicida  \n",
       "21                   Brevundimonas bullata  \n",
       "22               Exiguobacterium mexicanum  \n",
       "23     Peribacillus psychrosaccharolyticus  \n",
       "24               Metabacillus galliciensis  \n",
       "25               Microbacterium oleivorans  \n",
       "26                Haloferax namakaokahaiae  \n",
       "27              Streptomyces broussonetiae  \n",
       "28              Streptomyces phaeolivaceus  \n",
       "29             Photocaulis sulfatitolerans  \n",
       "30                   Photocaulis rubescens  \n",
       "...                                    ...  \n",
       "12557               Planktothrix rubescens  \n",
       "12558          Methanothermobacter wolfeii  \n",
       "12559                Staphylococcus aureus  \n",
       "12560                  Ezakiella coagulans  \n",
       "12561           Staphylococcus auricularis  \n",
       "12562             Cutibacterium granulosum  \n",
       "12563                  Cutibacterium acnes  \n",
       "12564              Neisseria polysaccharea  \n",
       "12565               Haemophilus influenzae  \n",
       "12566              Corynebacterium xerosis  \n",
       "12567              Methanosarcina siciliae  \n",
       "12568             Methanosarcina vacuolata  \n",
       "12569             Methanolobus bombayensis  \n",
       "12570                    Vibrio vulnificus  \n",
       "12571                 Haploplasma axanthum  \n",
       "12572            Mycoplasmopsis bovirhinis  \n",
       "12573             Metamycoplasma canadense  \n",
       "12574                  Mycoplasma mycoides  \n",
       "12575              Mycoplasmopsis synoviae  \n",
       "12576                Metamycoplasma sualvi  \n",
       "12577             Thiomicrospira thyasirae  \n",
       "12578             Thiomicrospira thyasirae  \n",
       "12579              Spirochaeta isovalerica  \n",
       "12580               Rhodovibrio sodomensis  \n",
       "12581           Rhodopseudomonas palustris  \n",
       "12582                      Geotoga petraea  \n",
       "12583             Fibrobacter intestinalis  \n",
       "12584                 Erythrobacter longus  \n",
       "12585           Desulfosporosinus orientis  \n",
       "12586            Brevundimonas bacteroides  \n",
       "\n",
       "[12586 rows x 4 columns]"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "insdnames_df[\"binomial\"] = insdnames_df[\"organism\"].str.split().str[:2].str.join(sep=\" \")\n",
    "insdnames_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NR_116306.1</td>\n",
       "      <td>Agrobacterium tumefaciens</td>\n",
       "      <td>type strain of Beijerinckia fluminensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NR_176804.1</td>\n",
       "      <td>Insectihabitans xujianqingii</td>\n",
       "      <td>type strain of Jinshanibacter xujianqingii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NR_176803.1</td>\n",
       "      <td>Prevotella ihumii</td>\n",
       "      <td>type strain of Prevotella ihumii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NR_176802.1</td>\n",
       "      <td>Candidatus Peptostreptococcus massiliensis</td>\n",
       "      <td>reference strain of Candidatus Peptostreptococ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>NR_176801.1</td>\n",
       "      <td>Fusobacterium russii</td>\n",
       "      <td>type strain of Fusobacterium russii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>NR_176800.1</td>\n",
       "      <td>Bilophila wadsworthia</td>\n",
       "      <td>type strain of Bilophila wadsworthia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>NR_176606.1</td>\n",
       "      <td>Speleotes anchialus</td>\n",
       "      <td>reference strain of Speleotes anchialus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>NR_176604.1</td>\n",
       "      <td>Komarekiella chia</td>\n",
       "      <td>reference strain of Komarekiella chia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>NR_176603.1</td>\n",
       "      <td>Stenomitos pantisii</td>\n",
       "      <td>reference strain of Stenomitos pantisii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>NR_176602.1</td>\n",
       "      <td>Olisthonema eestii</td>\n",
       "      <td>reference strain of Olisthonema eestii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>NR_176601.1</td>\n",
       "      <td>Nodularia mediterranea</td>\n",
       "      <td>reference strain of Nodularia mediterranea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>NR_176600.1</td>\n",
       "      <td>Iphianassa zackieohii</td>\n",
       "      <td>reference strain of Iphianassa zackieohii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>NR_176599.1</td>\n",
       "      <td>Haliplanktos anthonyquinnii</td>\n",
       "      <td>reference strain of Haliplanktos anthonyquinnii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>NR_176598.1</td>\n",
       "      <td>Amphirytos necridicus</td>\n",
       "      <td>reference strain of Amphirytos necridicus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>NR_176597.1</td>\n",
       "      <td>Cyanocohniella hyphalmyra</td>\n",
       "      <td>reference strain of Cyanocohniella hyphalmyra</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>NR_176596.1</td>\n",
       "      <td>Thermoleptolyngbya hindakiae</td>\n",
       "      <td>reference strain of Thermoleptolyngbya hindakiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>NR_176595.1</td>\n",
       "      <td>Hillbrichtia pamiria</td>\n",
       "      <td>reference strain of Hillbrichtia pamiria</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>NR_176594.1</td>\n",
       "      <td>Argonema galeatum</td>\n",
       "      <td>reference strain of Argonema galeatum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>NR_176593.1</td>\n",
       "      <td>Argonema antarcticum</td>\n",
       "      <td>reference strain of Argonema antarcticum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>NR_176592.1</td>\n",
       "      <td>Kovacikia minuta</td>\n",
       "      <td>reference strain of Kovacikia minuta</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>NR_176591.1</td>\n",
       "      <td>Waterburya agarophytonicola</td>\n",
       "      <td>reference strain of Waterburya agarophytonicola</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>NR_176590.1</td>\n",
       "      <td>Timaviella dunensis</td>\n",
       "      <td>reference strain of Timaviella dunensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>NR_176589.1</td>\n",
       "      <td>Compactococcus sarcinoides</td>\n",
       "      <td>reference strain of Compactococcus sarcinoides</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>NR_176588.1</td>\n",
       "      <td>Sinocapsa ellipsoidea</td>\n",
       "      <td>reference strain of Sinocapsa ellipsoidea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>NR_176587.1</td>\n",
       "      <td>Aliterella compacta</td>\n",
       "      <td>reference strain of Aliterella compacta</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>NR_176586.1</td>\n",
       "      <td>Komarekiella globosa</td>\n",
       "      <td>reference strain of Komarekiella globosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>NR_176585.1</td>\n",
       "      <td>Pseudocyanosarcina phycocyania</td>\n",
       "      <td>reference strain of Pseudocyanosarcina phycocy...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>NR_176584.1</td>\n",
       "      <td>Aliterella gigantea</td>\n",
       "      <td>reference strain of Aliterella gigantea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>NR_176583.1</td>\n",
       "      <td>Komarekiella gloeocapsoidea</td>\n",
       "      <td>reference strain of Komarekiella gloeocapsoidea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>NR_176582.1</td>\n",
       "      <td>Tigrinifilum guerandense</td>\n",
       "      <td>reference strain of Tigrinifilum guerandense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22716</th>\n",
       "      <td>NR_042913.1</td>\n",
       "      <td>Mycolicibacterium houstonense</td>\n",
       "      <td>type strain of Mycolicibacterium houstonense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22717</th>\n",
       "      <td>NR_042264.1</td>\n",
       "      <td>Sporolactobacillus nakayamae subsp. racemicus</td>\n",
       "      <td>type strain of Sporolactobacillus nakayamae su...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22718</th>\n",
       "      <td>NR_042040.1</td>\n",
       "      <td>Amycolatopsis lurida</td>\n",
       "      <td>type strain of Amycolatopsis lurida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22719</th>\n",
       "      <td>NR_041870.1</td>\n",
       "      <td>Nocardia salmonicida</td>\n",
       "      <td>type strain of Nocardia soli</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22720</th>\n",
       "      <td>NR_041224.1</td>\n",
       "      <td>Streptomyces janthinus</td>\n",
       "      <td>type strain of Streptomyces janthinus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22721</th>\n",
       "      <td>NR_040859.1</td>\n",
       "      <td>Pseudomonas parafulva NBRC 16636 = DSM 17004</td>\n",
       "      <td>type strain of Pseudomonas parafulva</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22722</th>\n",
       "      <td>NR_040835.1</td>\n",
       "      <td>Sphingomonas azotifigens</td>\n",
       "      <td>type strain of Sphingomonas azotifigens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22723</th>\n",
       "      <td>NR_037101.1</td>\n",
       "      <td>Streptococcus urinalis</td>\n",
       "      <td>type strain of Streptococcus urinalis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22724</th>\n",
       "      <td>NR_037001.1</td>\n",
       "      <td>Sinorhizobium arboris</td>\n",
       "      <td>type strain of Sinorhizobium arboris</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22725</th>\n",
       "      <td>NR_036983.1</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "      <td>type strain of Thermus brockianus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22726</th>\n",
       "      <td>NR_036972.1</td>\n",
       "      <td>Propionibacterium freudenreichii subsp. shermanii</td>\n",
       "      <td>type strain of Propionibacterium freudenreichi...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22727</th>\n",
       "      <td>NR_036912.1</td>\n",
       "      <td>Selenomonas ruminantium subsp. lactilytica</td>\n",
       "      <td>type strain of Selenomonas ruminantium subsp. ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22728</th>\n",
       "      <td>NR_036884.1</td>\n",
       "      <td>Nonomuraea roseoviolacea subsp. carminata</td>\n",
       "      <td>type strain of Nonomuraea roseoviolacea subsp....</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22729</th>\n",
       "      <td>NR_036809.1</td>\n",
       "      <td>Listeria ivanovii subsp. londoniensis</td>\n",
       "      <td>type strain of Listeria ivanovii subsp. london...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22730</th>\n",
       "      <td>NR_036807.1</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "      <td>type strain of Borreliella valaisiana</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22731</th>\n",
       "      <td>NR_036806.1</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "      <td>type strain of Borreliella lusitaniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22732</th>\n",
       "      <td>NR_036805.1</td>\n",
       "      <td>Legionella fallonii</td>\n",
       "      <td>type strain of Legionella fallonii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22733</th>\n",
       "      <td>NR_036804.1</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "      <td>type strain of Legionella rowbothamii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22734</th>\n",
       "      <td>NR_036803.1</td>\n",
       "      <td>Legionella drozanskii</td>\n",
       "      <td>type strain of Legionella drozanskii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22735</th>\n",
       "      <td>NR_036791.1</td>\n",
       "      <td>Staphylococcus lutrae</td>\n",
       "      <td>type strain of Staphylococcus lutrae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22736</th>\n",
       "      <td>NR_036769.1</td>\n",
       "      <td>Glutamicibacter creatinolyticus</td>\n",
       "      <td>type strain of Glutamicibacter creatinolyticus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22737</th>\n",
       "      <td>NR_029049.1</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "      <td>type strain of Amycolatopsis rifamycinica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22738</th>\n",
       "      <td>NG_041947.1</td>\n",
       "      <td>Ruminiclostridium cellulolyticum H10</td>\n",
       "      <td>type strain of Ruminiclostridium cellulolyticum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22739</th>\n",
       "      <td>NR_025615.1</td>\n",
       "      <td>Streptomyces albus</td>\n",
       "      <td>type strain of Streptomyces albus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22740</th>\n",
       "      <td>NR_025584.1</td>\n",
       "      <td>Mycobacterium avium</td>\n",
       "      <td>type strain of Mycobacterium avium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22741</th>\n",
       "      <td>NR_025100.1</td>\n",
       "      <td>Thermoclostridium stercorarium subsp. leptospa...</td>\n",
       "      <td>type strain of Thermoclostridium stercorarium ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22742</th>\n",
       "      <td>NR_026347.1</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "      <td>type strain of Clostridium isatidis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22743</th>\n",
       "      <td>NR_026295.1</td>\n",
       "      <td>Couchioplanes caeruleus subsp. azureus</td>\n",
       "      <td>type strain of Couchioplanes caeruleus subsp. ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22744</th>\n",
       "      <td>NR_025773.1</td>\n",
       "      <td>Halomonas koreensis</td>\n",
       "      <td>type strain of Halomonas koreensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22745</th>\n",
       "      <td>NR_147370.1</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "      <td>type strain of Pseudoflavonifractor phocaeensis</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>22745 rows × 3 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "       NRaccession                                           organism  \\\n",
       "1      NR_116306.1                          Agrobacterium tumefaciens   \n",
       "2      NR_176804.1                       Insectihabitans xujianqingii   \n",
       "3      NR_176803.1                                  Prevotella ihumii   \n",
       "4      NR_176802.1         Candidatus Peptostreptococcus massiliensis   \n",
       "5      NR_176801.1                               Fusobacterium russii   \n",
       "6      NR_176800.1                              Bilophila wadsworthia   \n",
       "7      NR_176606.1                                Speleotes anchialus   \n",
       "8      NR_176604.1                                  Komarekiella chia   \n",
       "9      NR_176603.1                                Stenomitos pantisii   \n",
       "10     NR_176602.1                                 Olisthonema eestii   \n",
       "11     NR_176601.1                             Nodularia mediterranea   \n",
       "12     NR_176600.1                              Iphianassa zackieohii   \n",
       "13     NR_176599.1                        Haliplanktos anthonyquinnii   \n",
       "14     NR_176598.1                              Amphirytos necridicus   \n",
       "15     NR_176597.1                          Cyanocohniella hyphalmyra   \n",
       "16     NR_176596.1                       Thermoleptolyngbya hindakiae   \n",
       "17     NR_176595.1                               Hillbrichtia pamiria   \n",
       "18     NR_176594.1                                  Argonema galeatum   \n",
       "19     NR_176593.1                               Argonema antarcticum   \n",
       "20     NR_176592.1                                   Kovacikia minuta   \n",
       "21     NR_176591.1                        Waterburya agarophytonicola   \n",
       "22     NR_176590.1                                Timaviella dunensis   \n",
       "23     NR_176589.1                         Compactococcus sarcinoides   \n",
       "24     NR_176588.1                              Sinocapsa ellipsoidea   \n",
       "25     NR_176587.1                                Aliterella compacta   \n",
       "26     NR_176586.1                               Komarekiella globosa   \n",
       "27     NR_176585.1                     Pseudocyanosarcina phycocyania   \n",
       "28     NR_176584.1                                Aliterella gigantea   \n",
       "29     NR_176583.1                        Komarekiella gloeocapsoidea   \n",
       "30     NR_176582.1                           Tigrinifilum guerandense   \n",
       "...            ...                                                ...   \n",
       "22716  NR_042913.1                      Mycolicibacterium houstonense   \n",
       "22717  NR_042264.1      Sporolactobacillus nakayamae subsp. racemicus   \n",
       "22718  NR_042040.1                               Amycolatopsis lurida   \n",
       "22719  NR_041870.1                               Nocardia salmonicida   \n",
       "22720  NR_041224.1                             Streptomyces janthinus   \n",
       "22721  NR_040859.1       Pseudomonas parafulva NBRC 16636 = DSM 17004   \n",
       "22722  NR_040835.1                           Sphingomonas azotifigens   \n",
       "22723  NR_037101.1                             Streptococcus urinalis   \n",
       "22724  NR_037001.1                              Sinorhizobium arboris   \n",
       "22725  NR_036983.1                                 Thermus brockianus   \n",
       "22726  NR_036972.1  Propionibacterium freudenreichii subsp. shermanii   \n",
       "22727  NR_036912.1         Selenomonas ruminantium subsp. lactilytica   \n",
       "22728  NR_036884.1          Nonomuraea roseoviolacea subsp. carminata   \n",
       "22729  NR_036809.1              Listeria ivanovii subsp. londoniensis   \n",
       "22730  NR_036807.1                       Borreliella valaisiana VS116   \n",
       "22731  NR_036806.1                             Borreliella lusitaniae   \n",
       "22732  NR_036805.1                                Legionella fallonii   \n",
       "22733  NR_036804.1                             Legionella rowbothamii   \n",
       "22734  NR_036803.1                              Legionella drozanskii   \n",
       "22735  NR_036791.1                              Staphylococcus lutrae   \n",
       "22736  NR_036769.1                    Glutamicibacter creatinolyticus   \n",
       "22737  NR_029049.1                         Amycolatopsis rifamycinica   \n",
       "22738  NG_041947.1               Ruminiclostridium cellulolyticum H10   \n",
       "22739  NR_025615.1                                 Streptomyces albus   \n",
       "22740  NR_025584.1                                Mycobacterium avium   \n",
       "22741  NR_025100.1  Thermoclostridium stercorarium subsp. leptospa...   \n",
       "22742  NR_026347.1                               Clostridium isatidis   \n",
       "22743  NR_026295.1             Couchioplanes caeruleus subsp. azureus   \n",
       "22744  NR_025773.1                                Halomonas koreensis   \n",
       "22745  NR_147370.1                   Pseudoflavonifractor phocaeensis   \n",
       "\n",
       "                                                    type  \n",
       "1                type strain of Beijerinckia fluminensis  \n",
       "2             type strain of Jinshanibacter xujianqingii  \n",
       "3                       type strain of Prevotella ihumii  \n",
       "4      reference strain of Candidatus Peptostreptococ...  \n",
       "5                    type strain of Fusobacterium russii  \n",
       "6                   type strain of Bilophila wadsworthia  \n",
       "7                reference strain of Speleotes anchialus  \n",
       "8                  reference strain of Komarekiella chia  \n",
       "9                reference strain of Stenomitos pantisii  \n",
       "10                reference strain of Olisthonema eestii  \n",
       "11            reference strain of Nodularia mediterranea  \n",
       "12             reference strain of Iphianassa zackieohii  \n",
       "13       reference strain of Haliplanktos anthonyquinnii  \n",
       "14             reference strain of Amphirytos necridicus  \n",
       "15         reference strain of Cyanocohniella hyphalmyra  \n",
       "16      reference strain of Thermoleptolyngbya hindakiae  \n",
       "17              reference strain of Hillbrichtia pamiria  \n",
       "18                 reference strain of Argonema galeatum  \n",
       "19              reference strain of Argonema antarcticum  \n",
       "20                  reference strain of Kovacikia minuta  \n",
       "21       reference strain of Waterburya agarophytonicola  \n",
       "22               reference strain of Timaviella dunensis  \n",
       "23        reference strain of Compactococcus sarcinoides  \n",
       "24             reference strain of Sinocapsa ellipsoidea  \n",
       "25               reference strain of Aliterella compacta  \n",
       "26              reference strain of Komarekiella globosa  \n",
       "27     reference strain of Pseudocyanosarcina phycocy...  \n",
       "28               reference strain of Aliterella gigantea  \n",
       "29       reference strain of Komarekiella gloeocapsoidea  \n",
       "30          reference strain of Tigrinifilum guerandense  \n",
       "...                                                  ...  \n",
       "22716       type strain of Mycolicibacterium houstonense  \n",
       "22717  type strain of Sporolactobacillus nakayamae su...  \n",
       "22718                type strain of Amycolatopsis lurida  \n",
       "22719                       type strain of Nocardia soli  \n",
       "22720              type strain of Streptomyces janthinus  \n",
       "22721               type strain of Pseudomonas parafulva  \n",
       "22722            type strain of Sphingomonas azotifigens  \n",
       "22723              type strain of Streptococcus urinalis  \n",
       "22724               type strain of Sinorhizobium arboris  \n",
       "22725                  type strain of Thermus brockianus  \n",
       "22726  type strain of Propionibacterium freudenreichi...  \n",
       "22727  type strain of Selenomonas ruminantium subsp. ...  \n",
       "22728  type strain of Nonomuraea roseoviolacea subsp....  \n",
       "22729  type strain of Listeria ivanovii subsp. london...  \n",
       "22730              type strain of Borreliella valaisiana  \n",
       "22731              type strain of Borreliella lusitaniae  \n",
       "22732                 type strain of Legionella fallonii  \n",
       "22733              type strain of Legionella rowbothamii  \n",
       "22734               type strain of Legionella drozanskii  \n",
       "22735               type strain of Staphylococcus lutrae  \n",
       "22736     type strain of Glutamicibacter creatinolyticus  \n",
       "22737          type strain of Amycolatopsis rifamycinica  \n",
       "22738    type strain of Ruminiclostridium cellulolyticum  \n",
       "22739                  type strain of Streptomyces albus  \n",
       "22740                 type strain of Mycobacterium avium  \n",
       "22741  type strain of Thermoclostridium stercorarium ...  \n",
       "22742                type strain of Clostridium isatidis  \n",
       "22743  type strain of Couchioplanes caeruleus subsp. ...  \n",
       "22744                 type strain of Halomonas koreensis  \n",
       "22745    type strain of Pseudoflavonifractor phocaeensis  \n",
       "\n",
       "[22745 rows x 3 columns]"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "refseqnames = (r'C:\\Users\\mcveigh\\Documents\\PythonPC\\refseq_names')\n",
    "refseqnames_df = pd.read_csv(refseqnames,\n",
    "                       sep='\\t',\n",
    "                       index_col=None,\n",
    "                       low_memory=False,\n",
    "                       usecols=[0,1,2],\n",
    "                       header=None,\n",
    "                       names=[\"NRaccession\", \"organism\",\"type\"])\n",
    "refseqnames_df = refseqnames_df[1:]\n",
    "refseqnames_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "      <th>binomial</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NR_116306.1</td>\n",
       "      <td>Agrobacterium tumefaciens</td>\n",
       "      <td>type strain of Beijerinckia fluminensis</td>\n",
       "      <td>Agrobacterium tumefaciens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NR_176804.1</td>\n",
       "      <td>Insectihabitans xujianqingii</td>\n",
       "      <td>type strain of Jinshanibacter xujianqingii</td>\n",
       "      <td>Insectihabitans xujianqingii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NR_176803.1</td>\n",
       "      <td>Prevotella ihumii</td>\n",
       "      <td>type strain of Prevotella ihumii</td>\n",
       "      <td>Prevotella ihumii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NR_176802.1</td>\n",
       "      <td>Candidatus Peptostreptococcus massiliensis</td>\n",
       "      <td>reference strain of Candidatus Peptostreptococ...</td>\n",
       "      <td>Candidatus Peptostreptococcus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>NR_176801.1</td>\n",
       "      <td>Fusobacterium russii</td>\n",
       "      <td>type strain of Fusobacterium russii</td>\n",
       "      <td>Fusobacterium russii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>NR_176800.1</td>\n",
       "      <td>Bilophila wadsworthia</td>\n",
       "      <td>type strain of Bilophila wadsworthia</td>\n",
       "      <td>Bilophila wadsworthia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>NR_176606.1</td>\n",
       "      <td>Speleotes anchialus</td>\n",
       "      <td>reference strain of Speleotes anchialus</td>\n",
       "      <td>Speleotes anchialus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>NR_176604.1</td>\n",
       "      <td>Komarekiella chia</td>\n",
       "      <td>reference strain of Komarekiella chia</td>\n",
       "      <td>Komarekiella chia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>NR_176603.1</td>\n",
       "      <td>Stenomitos pantisii</td>\n",
       "      <td>reference strain of Stenomitos pantisii</td>\n",
       "      <td>Stenomitos pantisii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>NR_176602.1</td>\n",
       "      <td>Olisthonema eestii</td>\n",
       "      <td>reference strain of Olisthonema eestii</td>\n",
       "      <td>Olisthonema eestii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>NR_176601.1</td>\n",
       "      <td>Nodularia mediterranea</td>\n",
       "      <td>reference strain of Nodularia mediterranea</td>\n",
       "      <td>Nodularia mediterranea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>NR_176600.1</td>\n",
       "      <td>Iphianassa zackieohii</td>\n",
       "      <td>reference strain of Iphianassa zackieohii</td>\n",
       "      <td>Iphianassa zackieohii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>NR_176599.1</td>\n",
       "      <td>Haliplanktos anthonyquinnii</td>\n",
       "      <td>reference strain of Haliplanktos anthonyquinnii</td>\n",
       "      <td>Haliplanktos anthonyquinnii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>NR_176598.1</td>\n",
       "      <td>Amphirytos necridicus</td>\n",
       "      <td>reference strain of Amphirytos necridicus</td>\n",
       "      <td>Amphirytos necridicus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>NR_176597.1</td>\n",
       "      <td>Cyanocohniella hyphalmyra</td>\n",
       "      <td>reference strain of Cyanocohniella hyphalmyra</td>\n",
       "      <td>Cyanocohniella hyphalmyra</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>NR_176596.1</td>\n",
       "      <td>Thermoleptolyngbya hindakiae</td>\n",
       "      <td>reference strain of Thermoleptolyngbya hindakiae</td>\n",
       "      <td>Thermoleptolyngbya hindakiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>NR_176595.1</td>\n",
       "      <td>Hillbrichtia pamiria</td>\n",
       "      <td>reference strain of Hillbrichtia pamiria</td>\n",
       "      <td>Hillbrichtia pamiria</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>NR_176594.1</td>\n",
       "      <td>Argonema galeatum</td>\n",
       "      <td>reference strain of Argonema galeatum</td>\n",
       "      <td>Argonema galeatum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>NR_176593.1</td>\n",
       "      <td>Argonema antarcticum</td>\n",
       "      <td>reference strain of Argonema antarcticum</td>\n",
       "      <td>Argonema antarcticum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>NR_176592.1</td>\n",
       "      <td>Kovacikia minuta</td>\n",
       "      <td>reference strain of Kovacikia minuta</td>\n",
       "      <td>Kovacikia minuta</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>NR_176591.1</td>\n",
       "      <td>Waterburya agarophytonicola</td>\n",
       "      <td>reference strain of Waterburya agarophytonicola</td>\n",
       "      <td>Waterburya agarophytonicola</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>NR_176590.1</td>\n",
       "      <td>Timaviella dunensis</td>\n",
       "      <td>reference strain of Timaviella dunensis</td>\n",
       "      <td>Timaviella dunensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>NR_176589.1</td>\n",
       "      <td>Compactococcus sarcinoides</td>\n",
       "      <td>reference strain of Compactococcus sarcinoides</td>\n",
       "      <td>Compactococcus sarcinoides</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>NR_176588.1</td>\n",
       "      <td>Sinocapsa ellipsoidea</td>\n",
       "      <td>reference strain of Sinocapsa ellipsoidea</td>\n",
       "      <td>Sinocapsa ellipsoidea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>NR_176587.1</td>\n",
       "      <td>Aliterella compacta</td>\n",
       "      <td>reference strain of Aliterella compacta</td>\n",
       "      <td>Aliterella compacta</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>NR_176586.1</td>\n",
       "      <td>Komarekiella globosa</td>\n",
       "      <td>reference strain of Komarekiella globosa</td>\n",
       "      <td>Komarekiella globosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>NR_176585.1</td>\n",
       "      <td>Pseudocyanosarcina phycocyania</td>\n",
       "      <td>reference strain of Pseudocyanosarcina phycocy...</td>\n",
       "      <td>Pseudocyanosarcina phycocyania</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>NR_176584.1</td>\n",
       "      <td>Aliterella gigantea</td>\n",
       "      <td>reference strain of Aliterella gigantea</td>\n",
       "      <td>Aliterella gigantea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>NR_176583.1</td>\n",
       "      <td>Komarekiella gloeocapsoidea</td>\n",
       "      <td>reference strain of Komarekiella gloeocapsoidea</td>\n",
       "      <td>Komarekiella gloeocapsoidea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>NR_176582.1</td>\n",
       "      <td>Tigrinifilum guerandense</td>\n",
       "      <td>reference strain of Tigrinifilum guerandense</td>\n",
       "      <td>Tigrinifilum guerandense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22716</th>\n",
       "      <td>NR_042913.1</td>\n",
       "      <td>Mycolicibacterium houstonense</td>\n",
       "      <td>type strain of Mycolicibacterium houstonense</td>\n",
       "      <td>Mycolicibacterium houstonense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22717</th>\n",
       "      <td>NR_042264.1</td>\n",
       "      <td>Sporolactobacillus nakayamae subsp. racemicus</td>\n",
       "      <td>type strain of Sporolactobacillus nakayamae su...</td>\n",
       "      <td>Sporolactobacillus nakayamae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22718</th>\n",
       "      <td>NR_042040.1</td>\n",
       "      <td>Amycolatopsis lurida</td>\n",
       "      <td>type strain of Amycolatopsis lurida</td>\n",
       "      <td>Amycolatopsis lurida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22719</th>\n",
       "      <td>NR_041870.1</td>\n",
       "      <td>Nocardia salmonicida</td>\n",
       "      <td>type strain of Nocardia soli</td>\n",
       "      <td>Nocardia salmonicida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22720</th>\n",
       "      <td>NR_041224.1</td>\n",
       "      <td>Streptomyces janthinus</td>\n",
       "      <td>type strain of Streptomyces janthinus</td>\n",
       "      <td>Streptomyces janthinus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22721</th>\n",
       "      <td>NR_040859.1</td>\n",
       "      <td>Pseudomonas parafulva NBRC 16636 = DSM 17004</td>\n",
       "      <td>type strain of Pseudomonas parafulva</td>\n",
       "      <td>Pseudomonas parafulva</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22722</th>\n",
       "      <td>NR_040835.1</td>\n",
       "      <td>Sphingomonas azotifigens</td>\n",
       "      <td>type strain of Sphingomonas azotifigens</td>\n",
       "      <td>Sphingomonas azotifigens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22723</th>\n",
       "      <td>NR_037101.1</td>\n",
       "      <td>Streptococcus urinalis</td>\n",
       "      <td>type strain of Streptococcus urinalis</td>\n",
       "      <td>Streptococcus urinalis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22724</th>\n",
       "      <td>NR_037001.1</td>\n",
       "      <td>Sinorhizobium arboris</td>\n",
       "      <td>type strain of Sinorhizobium arboris</td>\n",
       "      <td>Sinorhizobium arboris</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22725</th>\n",
       "      <td>NR_036983.1</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "      <td>type strain of Thermus brockianus</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22726</th>\n",
       "      <td>NR_036972.1</td>\n",
       "      <td>Propionibacterium freudenreichii subsp. shermanii</td>\n",
       "      <td>type strain of Propionibacterium freudenreichi...</td>\n",
       "      <td>Propionibacterium freudenreichii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22727</th>\n",
       "      <td>NR_036912.1</td>\n",
       "      <td>Selenomonas ruminantium subsp. lactilytica</td>\n",
       "      <td>type strain of Selenomonas ruminantium subsp. ...</td>\n",
       "      <td>Selenomonas ruminantium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22728</th>\n",
       "      <td>NR_036884.1</td>\n",
       "      <td>Nonomuraea roseoviolacea subsp. carminata</td>\n",
       "      <td>type strain of Nonomuraea roseoviolacea subsp....</td>\n",
       "      <td>Nonomuraea roseoviolacea</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22729</th>\n",
       "      <td>NR_036809.1</td>\n",
       "      <td>Listeria ivanovii subsp. londoniensis</td>\n",
       "      <td>type strain of Listeria ivanovii subsp. london...</td>\n",
       "      <td>Listeria ivanovii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22730</th>\n",
       "      <td>NR_036807.1</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "      <td>type strain of Borreliella valaisiana</td>\n",
       "      <td>Borreliella valaisiana</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22731</th>\n",
       "      <td>NR_036806.1</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "      <td>type strain of Borreliella lusitaniae</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22732</th>\n",
       "      <td>NR_036805.1</td>\n",
       "      <td>Legionella fallonii</td>\n",
       "      <td>type strain of Legionella fallonii</td>\n",
       "      <td>Legionella fallonii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22733</th>\n",
       "      <td>NR_036804.1</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "      <td>type strain of Legionella rowbothamii</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22734</th>\n",
       "      <td>NR_036803.1</td>\n",
       "      <td>Legionella drozanskii</td>\n",
       "      <td>type strain of Legionella drozanskii</td>\n",
       "      <td>Legionella drozanskii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22735</th>\n",
       "      <td>NR_036791.1</td>\n",
       "      <td>Staphylococcus lutrae</td>\n",
       "      <td>type strain of Staphylococcus lutrae</td>\n",
       "      <td>Staphylococcus lutrae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22736</th>\n",
       "      <td>NR_036769.1</td>\n",
       "      <td>Glutamicibacter creatinolyticus</td>\n",
       "      <td>type strain of Glutamicibacter creatinolyticus</td>\n",
       "      <td>Glutamicibacter creatinolyticus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22737</th>\n",
       "      <td>NR_029049.1</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "      <td>type strain of Amycolatopsis rifamycinica</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22738</th>\n",
       "      <td>NG_041947.1</td>\n",
       "      <td>Ruminiclostridium cellulolyticum H10</td>\n",
       "      <td>type strain of Ruminiclostridium cellulolyticum</td>\n",
       "      <td>Ruminiclostridium cellulolyticum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22739</th>\n",
       "      <td>NR_025615.1</td>\n",
       "      <td>Streptomyces albus</td>\n",
       "      <td>type strain of Streptomyces albus</td>\n",
       "      <td>Streptomyces albus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22740</th>\n",
       "      <td>NR_025584.1</td>\n",
       "      <td>Mycobacterium avium</td>\n",
       "      <td>type strain of Mycobacterium avium</td>\n",
       "      <td>Mycobacterium avium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22741</th>\n",
       "      <td>NR_025100.1</td>\n",
       "      <td>Thermoclostridium stercorarium subsp. leptospa...</td>\n",
       "      <td>type strain of Thermoclostridium stercorarium ...</td>\n",
       "      <td>Thermoclostridium stercorarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22742</th>\n",
       "      <td>NR_026347.1</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "      <td>type strain of Clostridium isatidis</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22743</th>\n",
       "      <td>NR_026295.1</td>\n",
       "      <td>Couchioplanes caeruleus subsp. azureus</td>\n",
       "      <td>type strain of Couchioplanes caeruleus subsp. ...</td>\n",
       "      <td>Couchioplanes caeruleus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22744</th>\n",
       "      <td>NR_025773.1</td>\n",
       "      <td>Halomonas koreensis</td>\n",
       "      <td>type strain of Halomonas koreensis</td>\n",
       "      <td>Halomonas koreensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22745</th>\n",
       "      <td>NR_147370.1</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "      <td>type strain of Pseudoflavonifractor phocaeensis</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>22745 rows × 4 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "       NRaccession                                           organism  \\\n",
       "1      NR_116306.1                          Agrobacterium tumefaciens   \n",
       "2      NR_176804.1                       Insectihabitans xujianqingii   \n",
       "3      NR_176803.1                                  Prevotella ihumii   \n",
       "4      NR_176802.1         Candidatus Peptostreptococcus massiliensis   \n",
       "5      NR_176801.1                               Fusobacterium russii   \n",
       "6      NR_176800.1                              Bilophila wadsworthia   \n",
       "7      NR_176606.1                                Speleotes anchialus   \n",
       "8      NR_176604.1                                  Komarekiella chia   \n",
       "9      NR_176603.1                                Stenomitos pantisii   \n",
       "10     NR_176602.1                                 Olisthonema eestii   \n",
       "11     NR_176601.1                             Nodularia mediterranea   \n",
       "12     NR_176600.1                              Iphianassa zackieohii   \n",
       "13     NR_176599.1                        Haliplanktos anthonyquinnii   \n",
       "14     NR_176598.1                              Amphirytos necridicus   \n",
       "15     NR_176597.1                          Cyanocohniella hyphalmyra   \n",
       "16     NR_176596.1                       Thermoleptolyngbya hindakiae   \n",
       "17     NR_176595.1                               Hillbrichtia pamiria   \n",
       "18     NR_176594.1                                  Argonema galeatum   \n",
       "19     NR_176593.1                               Argonema antarcticum   \n",
       "20     NR_176592.1                                   Kovacikia minuta   \n",
       "21     NR_176591.1                        Waterburya agarophytonicola   \n",
       "22     NR_176590.1                                Timaviella dunensis   \n",
       "23     NR_176589.1                         Compactococcus sarcinoides   \n",
       "24     NR_176588.1                              Sinocapsa ellipsoidea   \n",
       "25     NR_176587.1                                Aliterella compacta   \n",
       "26     NR_176586.1                               Komarekiella globosa   \n",
       "27     NR_176585.1                     Pseudocyanosarcina phycocyania   \n",
       "28     NR_176584.1                                Aliterella gigantea   \n",
       "29     NR_176583.1                        Komarekiella gloeocapsoidea   \n",
       "30     NR_176582.1                           Tigrinifilum guerandense   \n",
       "...            ...                                                ...   \n",
       "22716  NR_042913.1                      Mycolicibacterium houstonense   \n",
       "22717  NR_042264.1      Sporolactobacillus nakayamae subsp. racemicus   \n",
       "22718  NR_042040.1                               Amycolatopsis lurida   \n",
       "22719  NR_041870.1                               Nocardia salmonicida   \n",
       "22720  NR_041224.1                             Streptomyces janthinus   \n",
       "22721  NR_040859.1       Pseudomonas parafulva NBRC 16636 = DSM 17004   \n",
       "22722  NR_040835.1                           Sphingomonas azotifigens   \n",
       "22723  NR_037101.1                             Streptococcus urinalis   \n",
       "22724  NR_037001.1                              Sinorhizobium arboris   \n",
       "22725  NR_036983.1                                 Thermus brockianus   \n",
       "22726  NR_036972.1  Propionibacterium freudenreichii subsp. shermanii   \n",
       "22727  NR_036912.1         Selenomonas ruminantium subsp. lactilytica   \n",
       "22728  NR_036884.1          Nonomuraea roseoviolacea subsp. carminata   \n",
       "22729  NR_036809.1              Listeria ivanovii subsp. londoniensis   \n",
       "22730  NR_036807.1                       Borreliella valaisiana VS116   \n",
       "22731  NR_036806.1                             Borreliella lusitaniae   \n",
       "22732  NR_036805.1                                Legionella fallonii   \n",
       "22733  NR_036804.1                             Legionella rowbothamii   \n",
       "22734  NR_036803.1                              Legionella drozanskii   \n",
       "22735  NR_036791.1                              Staphylococcus lutrae   \n",
       "22736  NR_036769.1                    Glutamicibacter creatinolyticus   \n",
       "22737  NR_029049.1                         Amycolatopsis rifamycinica   \n",
       "22738  NG_041947.1               Ruminiclostridium cellulolyticum H10   \n",
       "22739  NR_025615.1                                 Streptomyces albus   \n",
       "22740  NR_025584.1                                Mycobacterium avium   \n",
       "22741  NR_025100.1  Thermoclostridium stercorarium subsp. leptospa...   \n",
       "22742  NR_026347.1                               Clostridium isatidis   \n",
       "22743  NR_026295.1             Couchioplanes caeruleus subsp. azureus   \n",
       "22744  NR_025773.1                                Halomonas koreensis   \n",
       "22745  NR_147370.1                   Pseudoflavonifractor phocaeensis   \n",
       "\n",
       "                                                    type  \\\n",
       "1                type strain of Beijerinckia fluminensis   \n",
       "2             type strain of Jinshanibacter xujianqingii   \n",
       "3                       type strain of Prevotella ihumii   \n",
       "4      reference strain of Candidatus Peptostreptococ...   \n",
       "5                    type strain of Fusobacterium russii   \n",
       "6                   type strain of Bilophila wadsworthia   \n",
       "7                reference strain of Speleotes anchialus   \n",
       "8                  reference strain of Komarekiella chia   \n",
       "9                reference strain of Stenomitos pantisii   \n",
       "10                reference strain of Olisthonema eestii   \n",
       "11            reference strain of Nodularia mediterranea   \n",
       "12             reference strain of Iphianassa zackieohii   \n",
       "13       reference strain of Haliplanktos anthonyquinnii   \n",
       "14             reference strain of Amphirytos necridicus   \n",
       "15         reference strain of Cyanocohniella hyphalmyra   \n",
       "16      reference strain of Thermoleptolyngbya hindakiae   \n",
       "17              reference strain of Hillbrichtia pamiria   \n",
       "18                 reference strain of Argonema galeatum   \n",
       "19              reference strain of Argonema antarcticum   \n",
       "20                  reference strain of Kovacikia minuta   \n",
       "21       reference strain of Waterburya agarophytonicola   \n",
       "22               reference strain of Timaviella dunensis   \n",
       "23        reference strain of Compactococcus sarcinoides   \n",
       "24             reference strain of Sinocapsa ellipsoidea   \n",
       "25               reference strain of Aliterella compacta   \n",
       "26              reference strain of Komarekiella globosa   \n",
       "27     reference strain of Pseudocyanosarcina phycocy...   \n",
       "28               reference strain of Aliterella gigantea   \n",
       "29       reference strain of Komarekiella gloeocapsoidea   \n",
       "30          reference strain of Tigrinifilum guerandense   \n",
       "...                                                  ...   \n",
       "22716       type strain of Mycolicibacterium houstonense   \n",
       "22717  type strain of Sporolactobacillus nakayamae su...   \n",
       "22718                type strain of Amycolatopsis lurida   \n",
       "22719                       type strain of Nocardia soli   \n",
       "22720              type strain of Streptomyces janthinus   \n",
       "22721               type strain of Pseudomonas parafulva   \n",
       "22722            type strain of Sphingomonas azotifigens   \n",
       "22723              type strain of Streptococcus urinalis   \n",
       "22724               type strain of Sinorhizobium arboris   \n",
       "22725                  type strain of Thermus brockianus   \n",
       "22726  type strain of Propionibacterium freudenreichi...   \n",
       "22727  type strain of Selenomonas ruminantium subsp. ...   \n",
       "22728  type strain of Nonomuraea roseoviolacea subsp....   \n",
       "22729  type strain of Listeria ivanovii subsp. london...   \n",
       "22730              type strain of Borreliella valaisiana   \n",
       "22731              type strain of Borreliella lusitaniae   \n",
       "22732                 type strain of Legionella fallonii   \n",
       "22733              type strain of Legionella rowbothamii   \n",
       "22734               type strain of Legionella drozanskii   \n",
       "22735               type strain of Staphylococcus lutrae   \n",
       "22736     type strain of Glutamicibacter creatinolyticus   \n",
       "22737          type strain of Amycolatopsis rifamycinica   \n",
       "22738    type strain of Ruminiclostridium cellulolyticum   \n",
       "22739                  type strain of Streptomyces albus   \n",
       "22740                 type strain of Mycobacterium avium   \n",
       "22741  type strain of Thermoclostridium stercorarium ...   \n",
       "22742                type strain of Clostridium isatidis   \n",
       "22743  type strain of Couchioplanes caeruleus subsp. ...   \n",
       "22744                 type strain of Halomonas koreensis   \n",
       "22745    type strain of Pseudoflavonifractor phocaeensis   \n",
       "\n",
       "                               binomial  \n",
       "1             Agrobacterium tumefaciens  \n",
       "2          Insectihabitans xujianqingii  \n",
       "3                     Prevotella ihumii  \n",
       "4         Candidatus Peptostreptococcus  \n",
       "5                  Fusobacterium russii  \n",
       "6                 Bilophila wadsworthia  \n",
       "7                   Speleotes anchialus  \n",
       "8                     Komarekiella chia  \n",
       "9                   Stenomitos pantisii  \n",
       "10                   Olisthonema eestii  \n",
       "11               Nodularia mediterranea  \n",
       "12                Iphianassa zackieohii  \n",
       "13          Haliplanktos anthonyquinnii  \n",
       "14                Amphirytos necridicus  \n",
       "15            Cyanocohniella hyphalmyra  \n",
       "16         Thermoleptolyngbya hindakiae  \n",
       "17                 Hillbrichtia pamiria  \n",
       "18                    Argonema galeatum  \n",
       "19                 Argonema antarcticum  \n",
       "20                     Kovacikia minuta  \n",
       "21          Waterburya agarophytonicola  \n",
       "22                  Timaviella dunensis  \n",
       "23           Compactococcus sarcinoides  \n",
       "24                Sinocapsa ellipsoidea  \n",
       "25                  Aliterella compacta  \n",
       "26                 Komarekiella globosa  \n",
       "27       Pseudocyanosarcina phycocyania  \n",
       "28                  Aliterella gigantea  \n",
       "29          Komarekiella gloeocapsoidea  \n",
       "30             Tigrinifilum guerandense  \n",
       "...                                 ...  \n",
       "22716     Mycolicibacterium houstonense  \n",
       "22717      Sporolactobacillus nakayamae  \n",
       "22718              Amycolatopsis lurida  \n",
       "22719              Nocardia salmonicida  \n",
       "22720            Streptomyces janthinus  \n",
       "22721             Pseudomonas parafulva  \n",
       "22722          Sphingomonas azotifigens  \n",
       "22723            Streptococcus urinalis  \n",
       "22724             Sinorhizobium arboris  \n",
       "22725                Thermus brockianus  \n",
       "22726  Propionibacterium freudenreichii  \n",
       "22727           Selenomonas ruminantium  \n",
       "22728          Nonomuraea roseoviolacea  \n",
       "22729                 Listeria ivanovii  \n",
       "22730            Borreliella valaisiana  \n",
       "22731            Borreliella lusitaniae  \n",
       "22732               Legionella fallonii  \n",
       "22733            Legionella rowbothamii  \n",
       "22734             Legionella drozanskii  \n",
       "22735             Staphylococcus lutrae  \n",
       "22736   Glutamicibacter creatinolyticus  \n",
       "22737        Amycolatopsis rifamycinica  \n",
       "22738  Ruminiclostridium cellulolyticum  \n",
       "22739                Streptomyces albus  \n",
       "22740               Mycobacterium avium  \n",
       "22741    Thermoclostridium stercorarium  \n",
       "22742              Clostridium isatidis  \n",
       "22743           Couchioplanes caeruleus  \n",
       "22744               Halomonas koreensis  \n",
       "22745  Pseudoflavonifractor phocaeensis  \n",
       "\n",
       "[22745 rows x 4 columns]"
      ]
     },
     "execution_count": 30,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "refseqnames_df[\"binomial\"] = refseqnames_df[\"organism\"].str.split().str[:2].str.join(sep=\" \")\n",
    "refseqnames_df"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### try merging on organism names"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
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       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
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       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>ON795919.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>ON878211.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>ON878211.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>ON878211.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>ON878211.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>ON878211.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>ON795916.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>ON795916.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>ON795916.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>ON795916.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>ON795916.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>ON597434.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>ON597434.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>ON597434.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>ON597434.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>ON597434.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>ON556595.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>ON556595.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>ON556595.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>ON556595.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>ON556595.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>MN117660.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118959.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>MN117660.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_118996.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>MN117660.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_116023.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>MN117660.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_113588.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>MN117660.1</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>type strain of Bacillus licheniformis</td>\n",
       "      <td>Bacillus licheniformis</td>\n",
       "      <td>NR_074923.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35993</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Aeromicrobium marinum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025681.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35994</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Dialister invisus DSM 15470</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025680.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35995</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Brachyspira pilosicoli</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025674.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35996</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Pseudoflavonifractor capillosus ATCC 29799</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025670.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35997</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Thioalkalivibrio nitratireducens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025661.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35998</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Afipia massiliensis 34633</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025646.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35999</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Aquiflexum balticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025634.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36000</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Hymenobacter perfusus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_108903.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36001</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Nisaea nitritireducens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_043924.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36002</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Dechloromonas hortensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_042819.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36003</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Deinococcus caeni</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_043473.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36004</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Sphingobium indicum B90A</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_042943.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36005</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Anoxybacillus pushchinoensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037100.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36006</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Photobacterium damselae subsp. piscicida</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037019.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36007</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Bartonella clarridgeiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036961.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36008</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Leuconostoc suionicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_109003.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36009</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Chitinophaga jiangningensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_118590.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36010</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Acetoanaerobium sticklandii</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_102880.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36011</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Chryseobacterium aquifrigidense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_044334.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36012</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Sinorhizobium arboris</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037001.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36013</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036983.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36014</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Nonomuraea roseoviolacea subsp. carminata</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036884.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36015</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Listeria ivanovii subsp. londoniensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036809.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36016</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036807.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36017</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036806.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36018</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036804.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36019</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_029049.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36020</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Mycobacterium avium</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025584.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36021</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026347.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36022</th>\n",
       "      <td>NaN</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_147370.1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>36023 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "        accession                                    organism  \\\n",
       "0      ON795919.1                      Bacillus licheniformis   \n",
       "1      ON795919.1                      Bacillus licheniformis   \n",
       "2      ON795919.1                      Bacillus licheniformis   \n",
       "3      ON795919.1                      Bacillus licheniformis   \n",
       "4      ON795919.1                      Bacillus licheniformis   \n",
       "5      ON878211.1                      Bacillus licheniformis   \n",
       "6      ON878211.1                      Bacillus licheniformis   \n",
       "7      ON878211.1                      Bacillus licheniformis   \n",
       "8      ON878211.1                      Bacillus licheniformis   \n",
       "9      ON878211.1                      Bacillus licheniformis   \n",
       "10     ON795916.1                      Bacillus licheniformis   \n",
       "11     ON795916.1                      Bacillus licheniformis   \n",
       "12     ON795916.1                      Bacillus licheniformis   \n",
       "13     ON795916.1                      Bacillus licheniformis   \n",
       "14     ON795916.1                      Bacillus licheniformis   \n",
       "15     ON597434.1                      Bacillus licheniformis   \n",
       "16     ON597434.1                      Bacillus licheniformis   \n",
       "17     ON597434.1                      Bacillus licheniformis   \n",
       "18     ON597434.1                      Bacillus licheniformis   \n",
       "19     ON597434.1                      Bacillus licheniformis   \n",
       "20     ON556595.1                      Bacillus licheniformis   \n",
       "21     ON556595.1                      Bacillus licheniformis   \n",
       "22     ON556595.1                      Bacillus licheniformis   \n",
       "23     ON556595.1                      Bacillus licheniformis   \n",
       "24     ON556595.1                      Bacillus licheniformis   \n",
       "25     MN117660.1                      Bacillus licheniformis   \n",
       "26     MN117660.1                      Bacillus licheniformis   \n",
       "27     MN117660.1                      Bacillus licheniformis   \n",
       "28     MN117660.1                      Bacillus licheniformis   \n",
       "29     MN117660.1                      Bacillus licheniformis   \n",
       "...           ...                                         ...   \n",
       "35993         NaN                       Aeromicrobium marinum   \n",
       "35994         NaN                 Dialister invisus DSM 15470   \n",
       "35995         NaN                      Brachyspira pilosicoli   \n",
       "35996         NaN  Pseudoflavonifractor capillosus ATCC 29799   \n",
       "35997         NaN            Thioalkalivibrio nitratireducens   \n",
       "35998         NaN                   Afipia massiliensis 34633   \n",
       "35999         NaN                         Aquiflexum balticum   \n",
       "36000         NaN                       Hymenobacter perfusus   \n",
       "36001         NaN                      Nisaea nitritireducens   \n",
       "36002         NaN                     Dechloromonas hortensis   \n",
       "36003         NaN                           Deinococcus caeni   \n",
       "36004         NaN                    Sphingobium indicum B90A   \n",
       "36005         NaN                Anoxybacillus pushchinoensis   \n",
       "36006         NaN    Photobacterium damselae subsp. piscicida   \n",
       "36007         NaN                     Bartonella clarridgeiae   \n",
       "36008         NaN                       Leuconostoc suionicum   \n",
       "36009         NaN                 Chitinophaga jiangningensis   \n",
       "36010         NaN                 Acetoanaerobium sticklandii   \n",
       "36011         NaN             Chryseobacterium aquifrigidense   \n",
       "36012         NaN                       Sinorhizobium arboris   \n",
       "36013         NaN                          Thermus brockianus   \n",
       "36014         NaN   Nonomuraea roseoviolacea subsp. carminata   \n",
       "36015         NaN       Listeria ivanovii subsp. londoniensis   \n",
       "36016         NaN                Borreliella valaisiana VS116   \n",
       "36017         NaN                      Borreliella lusitaniae   \n",
       "36018         NaN                      Legionella rowbothamii   \n",
       "36019         NaN                  Amycolatopsis rifamycinica   \n",
       "36020         NaN                         Mycobacterium avium   \n",
       "36021         NaN                        Clostridium isatidis   \n",
       "36022         NaN            Pseudoflavonifractor phocaeensis   \n",
       "\n",
       "                                      type_x                binomial  \\\n",
       "0      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "1      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "2      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "3      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "4      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "5      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "6      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "7      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "8      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "9      type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "10                                       NaN  Bacillus licheniformis   \n",
       "11                                       NaN  Bacillus licheniformis   \n",
       "12                                       NaN  Bacillus licheniformis   \n",
       "13                                       NaN  Bacillus licheniformis   \n",
       "14                                       NaN  Bacillus licheniformis   \n",
       "15     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "16     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "17     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "18     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "19     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "20     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "21     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "22     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "23     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "24     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "25     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "26     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "27     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "28     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "29     type strain of Bacillus licheniformis  Bacillus licheniformis   \n",
       "...                                      ...                     ...   \n",
       "35993                                    NaN                     NaN   \n",
       "35994                                    NaN                     NaN   \n",
       "35995                                    NaN                     NaN   \n",
       "35996                                    NaN                     NaN   \n",
       "35997                                    NaN                     NaN   \n",
       "35998                                    NaN                     NaN   \n",
       "35999                                    NaN                     NaN   \n",
       "36000                                    NaN                     NaN   \n",
       "36001                                    NaN                     NaN   \n",
       "36002                                    NaN                     NaN   \n",
       "36003                                    NaN                     NaN   \n",
       "36004                                    NaN                     NaN   \n",
       "36005                                    NaN                     NaN   \n",
       "36006                                    NaN                     NaN   \n",
       "36007                                    NaN                     NaN   \n",
       "36008                                    NaN                     NaN   \n",
       "36009                                    NaN                     NaN   \n",
       "36010                                    NaN                     NaN   \n",
       "36011                                    NaN                     NaN   \n",
       "36012                                    NaN                     NaN   \n",
       "36013                                    NaN                     NaN   \n",
       "36014                                    NaN                     NaN   \n",
       "36015                                    NaN                     NaN   \n",
       "36016                                    NaN                     NaN   \n",
       "36017                                    NaN                     NaN   \n",
       "36018                                    NaN                     NaN   \n",
       "36019                                    NaN                     NaN   \n",
       "36020                                    NaN                     NaN   \n",
       "36021                                    NaN                     NaN   \n",
       "36022                                    NaN                     NaN   \n",
       "\n",
       "       NRaccession  \n",
       "0      NR_118959.1  \n",
       "1      NR_118996.1  \n",
       "2      NR_116023.1  \n",
       "3      NR_113588.1  \n",
       "4      NR_074923.1  \n",
       "5      NR_118959.1  \n",
       "6      NR_118996.1  \n",
       "7      NR_116023.1  \n",
       "8      NR_113588.1  \n",
       "9      NR_074923.1  \n",
       "10     NR_118959.1  \n",
       "11     NR_118996.1  \n",
       "12     NR_116023.1  \n",
       "13     NR_113588.1  \n",
       "14     NR_074923.1  \n",
       "15     NR_118959.1  \n",
       "16     NR_118996.1  \n",
       "17     NR_116023.1  \n",
       "18     NR_113588.1  \n",
       "19     NR_074923.1  \n",
       "20     NR_118959.1  \n",
       "21     NR_118996.1  \n",
       "22     NR_116023.1  \n",
       "23     NR_113588.1  \n",
       "24     NR_074923.1  \n",
       "25     NR_118959.1  \n",
       "26     NR_118996.1  \n",
       "27     NR_116023.1  \n",
       "28     NR_113588.1  \n",
       "29     NR_074923.1  \n",
       "...            ...  \n",
       "35993  NR_025681.1  \n",
       "35994  NR_025680.1  \n",
       "35995  NR_025674.1  \n",
       "35996  NR_025670.1  \n",
       "35997  NR_025661.1  \n",
       "35998  NR_025646.1  \n",
       "35999  NR_025634.1  \n",
       "36000  NR_108903.1  \n",
       "36001  NR_043924.1  \n",
       "36002  NR_042819.1  \n",
       "36003  NR_043473.1  \n",
       "36004  NR_042943.1  \n",
       "36005  NR_037100.1  \n",
       "36006  NR_037019.1  \n",
       "36007  NR_036961.1  \n",
       "36008  NR_109003.1  \n",
       "36009  NR_118590.1  \n",
       "36010  NR_102880.1  \n",
       "36011  NR_044334.1  \n",
       "36012  NR_037001.1  \n",
       "36013  NR_036983.1  \n",
       "36014  NR_036884.1  \n",
       "36015  NR_036809.1  \n",
       "36016  NR_036807.1  \n",
       "36017  NR_036806.1  \n",
       "36018  NR_036804.1  \n",
       "36019  NR_029049.1  \n",
       "36020  NR_025584.1  \n",
       "36021  NR_026347.1  \n",
       "36022  NR_147370.1  \n",
       "\n",
       "[36023 rows x 5 columns]"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "combine_df=pd.merge(left=insdnames_df, right=refseqnames_df, left_on='organism', right_on='organism', how = 'outer')\n",
    "#combine_df.drop_duplicates(subset=['type',], inplace=True)\n",
    "combine_df.drop(columns=['type_y'], inplace=True)\n",
    "combine_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>173</th>\n",
       "      <td>KY471031.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>type strain of Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>174</th>\n",
       "      <td>AF082563.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>type strain of Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>175</th>\n",
       "      <td>AF529062.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>type strain of Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>190</th>\n",
       "      <td>KY471025.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>type strain of Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>191</th>\n",
       "      <td>MW111190.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>type strain of Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>192</th>\n",
       "      <td>MN905345.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>type strain of Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>215</th>\n",
       "      <td>ON927072.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>216</th>\n",
       "      <td>MT849770.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>217</th>\n",
       "      <td>MN826232.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>218</th>\n",
       "      <td>MN567019.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>MN420808.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>type strain of Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>ON927071.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>type strain of Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>MT555308.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>type strain of Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>222</th>\n",
       "      <td>MN955505.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>type strain of Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>223</th>\n",
       "      <td>MN148634.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>type strain of Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>224</th>\n",
       "      <td>MW970396.1</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>type strain of Photocaulis sulfatitolerans</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>225</th>\n",
       "      <td>MW970386.1</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>type strain of Photocaulis rubescens</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>226</th>\n",
       "      <td>MW182519.1</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>type strain of Dawidia soli</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>227</th>\n",
       "      <td>MW182518.1</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>type strain of Chryseosolibacter indicus</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>228</th>\n",
       "      <td>MW182517.1</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>type strain of Dawidia cretensis</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>229</th>\n",
       "      <td>MW182516.1</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>type strain of Chryseosolibacter histidini</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>230</th>\n",
       "      <td>LC650843.1</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>type strain of Streptococcus toyakuensis</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>231</th>\n",
       "      <td>ON900080.1</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>type strain of Paenalcaligenes niemegkensis</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>599</th>\n",
       "      <td>ON328317.1</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>type strain of Rhodobacter calidifons</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>600</th>\n",
       "      <td>OM044129.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>reference strain of Desmonostoc caucasicum</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>601</th>\n",
       "      <td>OM044128.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>reference strain of Desmonostoc caucasicum</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>602</th>\n",
       "      <td>MZ048018.1</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>type strain of Desulfovulcanus ferrireducens</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>648</th>\n",
       "      <td>MF383372.1</td>\n",
       "      <td>Nunduva kania FCME C458-M16-K66</td>\n",
       "      <td>reference strain of Nunduva kania</td>\n",
       "      <td>Nunduva kania</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>649</th>\n",
       "      <td>MF383371.1</td>\n",
       "      <td>Nunduva kania FCME C458-M16-K66</td>\n",
       "      <td>reference strain of Nunduva kania</td>\n",
       "      <td>Nunduva kania</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>650</th>\n",
       "      <td>MF405383.1</td>\n",
       "      <td>Thermoleptolyngbya sichuanensis PKUAC-SCTA183</td>\n",
       "      <td>holotype of Thermoleptolyngbya sichuanensis</td>\n",
       "      <td>Thermoleptolyngbya sichuanensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19444</th>\n",
       "      <td>X58361.1</td>\n",
       "      <td>Baaleninema simplex PCC 7105</td>\n",
       "      <td>type strain of Baaleninema simplex</td>\n",
       "      <td>Baaleninema simplex</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19445</th>\n",
       "      <td>X58360.1</td>\n",
       "      <td>Baaleninema simplex PCC 7105</td>\n",
       "      <td>type strain of Baaleninema simplex</td>\n",
       "      <td>Baaleninema simplex</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19446</th>\n",
       "      <td>X58359.1</td>\n",
       "      <td>Baaleninema simplex PCC 7105</td>\n",
       "      <td>type strain of Baaleninema simplex</td>\n",
       "      <td>Baaleninema simplex</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19484</th>\n",
       "      <td>X70769.2</td>\n",
       "      <td>Limnospira indica PCC 8005</td>\n",
       "      <td>reference strain of Limnospira indica</td>\n",
       "      <td>Limnospira indica</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19506</th>\n",
       "      <td>X86004.1</td>\n",
       "      <td>Mobiluncus mulieris ATCC 35243</td>\n",
       "      <td>type strain of Mobiluncus mulieris</td>\n",
       "      <td>Mobiluncus mulieris</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19507</th>\n",
       "      <td>X82602.1</td>\n",
       "      <td>Mobiluncus mulieris ATCC 35243</td>\n",
       "      <td>type strain of Mobiluncus mulieris</td>\n",
       "      <td>Mobiluncus mulieris</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19533</th>\n",
       "      <td>AJ580352.1</td>\n",
       "      <td>Paracoccus bogoriensis</td>\n",
       "      <td>type strain of ''Paracoccus bogoriensis'' Osan...</td>\n",
       "      <td>Paracoccus bogoriensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19546</th>\n",
       "      <td>AJ507460.2</td>\n",
       "      <td>Aurantimicrobium photophilum</td>\n",
       "      <td>type strain of Aurantimicrobium photophilum</td>\n",
       "      <td>Aurantimicrobium photophilum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19547</th>\n",
       "      <td>AY203901.1</td>\n",
       "      <td>Helicobacter enhydrae</td>\n",
       "      <td>type strain of Helicobacter enhydrae</td>\n",
       "      <td>Helicobacter enhydrae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19548</th>\n",
       "      <td>AY135649.1</td>\n",
       "      <td>Xanthomonas euvesicatoria pv. allii CFBP 6369</td>\n",
       "      <td>pathotype strain of Xanthomonas euvesicatoria ...</td>\n",
       "      <td>Xanthomonas euvesicatoria</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19554</th>\n",
       "      <td>X85432.1</td>\n",
       "      <td>Azoarcus communis SWub3 = DSM 12120</td>\n",
       "      <td>type strain of Azoarcus communis</td>\n",
       "      <td>Azoarcus communis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19585</th>\n",
       "      <td>X58347.1</td>\n",
       "      <td>Thermoanaerobacter ethanolicus JW 200</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Thermoanaerobacter ethanolicus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19615</th>\n",
       "      <td>AJ270490.2</td>\n",
       "      <td>Anaerobutyricum soehngenii</td>\n",
       "      <td>type strain of Anaerobutyricum soehngenii Shet...</td>\n",
       "      <td>Anaerobutyricum soehngenii</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19616</th>\n",
       "      <td>AJ270469.2</td>\n",
       "      <td>Faecalibacterium duncaniae</td>\n",
       "      <td>type strain of Faecalibacterium duncaniae</td>\n",
       "      <td>Faecalibacterium duncaniae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19705</th>\n",
       "      <td>AF480575.1</td>\n",
       "      <td>Mycolicibacterium acapulense</td>\n",
       "      <td>type strain of Mycolicibacterium acapulense</td>\n",
       "      <td>Mycolicibacterium acapulense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19720</th>\n",
       "      <td>AF384209.1</td>\n",
       "      <td>Allochromatium tepidum</td>\n",
       "      <td>type strain of Allochromatium tepidum</td>\n",
       "      <td>Allochromatium tepidum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19757</th>\n",
       "      <td>AF260509.2</td>\n",
       "      <td>Limnospira maxima UTEX LB 2720</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Limnospira maxima</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19758</th>\n",
       "      <td>AF275949.1</td>\n",
       "      <td>Clostridium neonatale</td>\n",
       "      <td>type strain of Clostridium neonatale</td>\n",
       "      <td>Clostridium neonatale</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19775</th>\n",
       "      <td>AJ247250.2</td>\n",
       "      <td>Neisseria weaveri ATCC 51223</td>\n",
       "      <td>type strain of Neisseria weaveri</td>\n",
       "      <td>Neisseria weaveri</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19780</th>\n",
       "      <td>AJ247253.2</td>\n",
       "      <td>Neisseria elongata subsp. glycolytica</td>\n",
       "      <td>type strain of Neisseria elongata subsp. glyco...</td>\n",
       "      <td>Neisseria elongata</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19802</th>\n",
       "      <td>AJ247217.2</td>\n",
       "      <td>Kingella oralis ATCC 51147</td>\n",
       "      <td>type strain of Kingella oralis</td>\n",
       "      <td>Kingella oralis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19804</th>\n",
       "      <td>AJ247209.2</td>\n",
       "      <td>Acinetobacter radioresistens DSM 6976 = NBRC 1...</td>\n",
       "      <td>type strain of Acinetobacter radioresistens</td>\n",
       "      <td>Acinetobacter radioresistens</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19818</th>\n",
       "      <td>Y12355.1</td>\n",
       "      <td>Neorhizobium galegae bv. orientalis str. HAMBI...</td>\n",
       "      <td>type strain of Neorhizobium galegae</td>\n",
       "      <td>Neorhizobium galegae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19819</th>\n",
       "      <td>X63823.1</td>\n",
       "      <td>Neorhizobium galegae bv. orientalis str. HAMBI...</td>\n",
       "      <td>type strain of Neorhizobium galegae</td>\n",
       "      <td>Neorhizobium galegae</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19867</th>\n",
       "      <td>U96454.1</td>\n",
       "      <td>Sphingomonas echinoides ATCC 14820</td>\n",
       "      <td>type strain of Sphingomonas echinoides</td>\n",
       "      <td>Sphingomonas echinoides</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19878</th>\n",
       "      <td>X89513.1</td>\n",
       "      <td>Bifidobacterium animalis subsp. lactis DSM 10140</td>\n",
       "      <td>type strain of Bifidobacterium animalis subsp....</td>\n",
       "      <td>Bifidobacterium animalis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19887</th>\n",
       "      <td>X86690.1</td>\n",
       "      <td>Dehalobacterium formicoaceticum</td>\n",
       "      <td>type strain of Dehalobacterium formicoaceticum</td>\n",
       "      <td>Dehalobacterium formicoaceticum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19920</th>\n",
       "      <td>Z21634.1</td>\n",
       "      <td>Leptospira inadai</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Leptospira inadai</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19923</th>\n",
       "      <td>X74894.1</td>\n",
       "      <td>Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = ...</td>\n",
       "      <td>type strain of Acinetobacter lwoffii</td>\n",
       "      <td>Acinetobacter lwoffii</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19928</th>\n",
       "      <td>L36100.1</td>\n",
       "      <td>Rickettsia conorii subsp. caspia A-167</td>\n",
       "      <td>type strain of Rickettsia conorii subsp. caspia</td>\n",
       "      <td>Rickettsia conorii</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5035 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "        accession                                           organism  \\\n",
       "173    KY471031.1                        Pseudoalteromonas fuliginea   \n",
       "174    AF082563.1                        Pseudoalteromonas fuliginea   \n",
       "175    AF529062.1                        Pseudoalteromonas fuliginea   \n",
       "190    KY471025.1                            Aurantimonas coralicida   \n",
       "191    MW111190.1                            Aurantimonas coralicida   \n",
       "192    MN905345.1                            Aurantimonas coralicida   \n",
       "215    ON927072.1                         Streptomyces broussonetiae   \n",
       "216    MT849770.1                         Streptomyces broussonetiae   \n",
       "217    MN826232.1                         Streptomyces broussonetiae   \n",
       "218    MN567019.1                         Streptomyces broussonetiae   \n",
       "219    MN420808.1                         Streptomyces broussonetiae   \n",
       "220    ON927071.1                         Streptomyces phaeolivaceus   \n",
       "221    MT555308.1                         Streptomyces phaeolivaceus   \n",
       "222    MN955505.1                         Streptomyces phaeolivaceus   \n",
       "223    MN148634.1                         Streptomyces phaeolivaceus   \n",
       "224    MW970396.1                        Photocaulis sulfatitolerans   \n",
       "225    MW970386.1                              Photocaulis rubescens   \n",
       "226    MW182519.1                                       Dawidia soli   \n",
       "227    MW182518.1                          Chryseosolibacter indicus   \n",
       "228    MW182517.1                                  Dawidia cretensis   \n",
       "229    MW182516.1                        Chryseosolibacter histidini   \n",
       "230    LC650843.1                          Streptococcus toyakuensis   \n",
       "231    ON900080.1                       Paenalcaligenes niemegkensis   \n",
       "599    ON328317.1                             Rhodobacter calidifons   \n",
       "600    OM044129.1                     Desmonostoc caucasicum MZ-C154   \n",
       "601    OM044128.1                     Desmonostoc caucasicum MZ-C154   \n",
       "602    MZ048018.1                      Desulfovulcanus ferrireducens   \n",
       "648    MF383372.1                    Nunduva kania FCME C458-M16-K66   \n",
       "649    MF383371.1                    Nunduva kania FCME C458-M16-K66   \n",
       "650    MF405383.1      Thermoleptolyngbya sichuanensis PKUAC-SCTA183   \n",
       "...           ...                                                ...   \n",
       "19444    X58361.1                       Baaleninema simplex PCC 7105   \n",
       "19445    X58360.1                       Baaleninema simplex PCC 7105   \n",
       "19446    X58359.1                       Baaleninema simplex PCC 7105   \n",
       "19484    X70769.2                         Limnospira indica PCC 8005   \n",
       "19506    X86004.1                     Mobiluncus mulieris ATCC 35243   \n",
       "19507    X82602.1                     Mobiluncus mulieris ATCC 35243   \n",
       "19533  AJ580352.1                             Paracoccus bogoriensis   \n",
       "19546  AJ507460.2                       Aurantimicrobium photophilum   \n",
       "19547  AY203901.1                              Helicobacter enhydrae   \n",
       "19548  AY135649.1      Xanthomonas euvesicatoria pv. allii CFBP 6369   \n",
       "19554    X85432.1                Azoarcus communis SWub3 = DSM 12120   \n",
       "19585    X58347.1              Thermoanaerobacter ethanolicus JW 200   \n",
       "19615  AJ270490.2                         Anaerobutyricum soehngenii   \n",
       "19616  AJ270469.2                         Faecalibacterium duncaniae   \n",
       "19705  AF480575.1                       Mycolicibacterium acapulense   \n",
       "19720  AF384209.1                             Allochromatium tepidum   \n",
       "19757  AF260509.2                     Limnospira maxima UTEX LB 2720   \n",
       "19758  AF275949.1                              Clostridium neonatale   \n",
       "19775  AJ247250.2                       Neisseria weaveri ATCC 51223   \n",
       "19780  AJ247253.2              Neisseria elongata subsp. glycolytica   \n",
       "19802  AJ247217.2                         Kingella oralis ATCC 51147   \n",
       "19804  AJ247209.2  Acinetobacter radioresistens DSM 6976 = NBRC 1...   \n",
       "19818    Y12355.1  Neorhizobium galegae bv. orientalis str. HAMBI...   \n",
       "19819    X63823.1  Neorhizobium galegae bv. orientalis str. HAMBI...   \n",
       "19867    U96454.1                 Sphingomonas echinoides ATCC 14820   \n",
       "19878    X89513.1   Bifidobacterium animalis subsp. lactis DSM 10140   \n",
       "19887    X86690.1                    Dehalobacterium formicoaceticum   \n",
       "19920    Z21634.1                                  Leptospira inadai   \n",
       "19923    X74894.1  Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = ...   \n",
       "19928    L36100.1             Rickettsia conorii subsp. caspia A-167   \n",
       "\n",
       "                                                  type_x  \\\n",
       "173           type strain of Pseudoalteromonas fuliginea   \n",
       "174           type strain of Pseudoalteromonas fuliginea   \n",
       "175           type strain of Pseudoalteromonas fuliginea   \n",
       "190               type strain of Aurantimonas coralicida   \n",
       "191               type strain of Aurantimonas coralicida   \n",
       "192               type strain of Aurantimonas coralicida   \n",
       "215            type strain of Streptomyces broussonetiae   \n",
       "216            type strain of Streptomyces broussonetiae   \n",
       "217            type strain of Streptomyces broussonetiae   \n",
       "218            type strain of Streptomyces broussonetiae   \n",
       "219            type strain of Streptomyces broussonetiae   \n",
       "220            type strain of Streptomyces phaeolivaceus   \n",
       "221            type strain of Streptomyces phaeolivaceus   \n",
       "222            type strain of Streptomyces phaeolivaceus   \n",
       "223            type strain of Streptomyces phaeolivaceus   \n",
       "224           type strain of Photocaulis sulfatitolerans   \n",
       "225                 type strain of Photocaulis rubescens   \n",
       "226                          type strain of Dawidia soli   \n",
       "227             type strain of Chryseosolibacter indicus   \n",
       "228                     type strain of Dawidia cretensis   \n",
       "229           type strain of Chryseosolibacter histidini   \n",
       "230             type strain of Streptococcus toyakuensis   \n",
       "231          type strain of Paenalcaligenes niemegkensis   \n",
       "599                type strain of Rhodobacter calidifons   \n",
       "600           reference strain of Desmonostoc caucasicum   \n",
       "601           reference strain of Desmonostoc caucasicum   \n",
       "602         type strain of Desulfovulcanus ferrireducens   \n",
       "648                    reference strain of Nunduva kania   \n",
       "649                    reference strain of Nunduva kania   \n",
       "650          holotype of Thermoleptolyngbya sichuanensis   \n",
       "...                                                  ...   \n",
       "19444                 type strain of Baaleninema simplex   \n",
       "19445                 type strain of Baaleninema simplex   \n",
       "19446                 type strain of Baaleninema simplex   \n",
       "19484              reference strain of Limnospira indica   \n",
       "19506                 type strain of Mobiluncus mulieris   \n",
       "19507                 type strain of Mobiluncus mulieris   \n",
       "19533  type strain of ''Paracoccus bogoriensis'' Osan...   \n",
       "19546        type strain of Aurantimicrobium photophilum   \n",
       "19547               type strain of Helicobacter enhydrae   \n",
       "19548  pathotype strain of Xanthomonas euvesicatoria ...   \n",
       "19554                   type strain of Azoarcus communis   \n",
       "19585                                                NaN   \n",
       "19615  type strain of Anaerobutyricum soehngenii Shet...   \n",
       "19616          type strain of Faecalibacterium duncaniae   \n",
       "19705        type strain of Mycolicibacterium acapulense   \n",
       "19720              type strain of Allochromatium tepidum   \n",
       "19757                                                NaN   \n",
       "19758               type strain of Clostridium neonatale   \n",
       "19775                   type strain of Neisseria weaveri   \n",
       "19780  type strain of Neisseria elongata subsp. glyco...   \n",
       "19802                     type strain of Kingella oralis   \n",
       "19804        type strain of Acinetobacter radioresistens   \n",
       "19818                type strain of Neorhizobium galegae   \n",
       "19819                type strain of Neorhizobium galegae   \n",
       "19867             type strain of Sphingomonas echinoides   \n",
       "19878  type strain of Bifidobacterium animalis subsp....   \n",
       "19887     type strain of Dehalobacterium formicoaceticum   \n",
       "19920                                                NaN   \n",
       "19923               type strain of Acinetobacter lwoffii   \n",
       "19928    type strain of Rickettsia conorii subsp. caspia   \n",
       "\n",
       "                              binomial NRaccession  \n",
       "173        Pseudoalteromonas fuliginea         NaN  \n",
       "174        Pseudoalteromonas fuliginea         NaN  \n",
       "175        Pseudoalteromonas fuliginea         NaN  \n",
       "190            Aurantimonas coralicida         NaN  \n",
       "191            Aurantimonas coralicida         NaN  \n",
       "192            Aurantimonas coralicida         NaN  \n",
       "215         Streptomyces broussonetiae         NaN  \n",
       "216         Streptomyces broussonetiae         NaN  \n",
       "217         Streptomyces broussonetiae         NaN  \n",
       "218         Streptomyces broussonetiae         NaN  \n",
       "219         Streptomyces broussonetiae         NaN  \n",
       "220         Streptomyces phaeolivaceus         NaN  \n",
       "221         Streptomyces phaeolivaceus         NaN  \n",
       "222         Streptomyces phaeolivaceus         NaN  \n",
       "223         Streptomyces phaeolivaceus         NaN  \n",
       "224        Photocaulis sulfatitolerans         NaN  \n",
       "225              Photocaulis rubescens         NaN  \n",
       "226                       Dawidia soli         NaN  \n",
       "227          Chryseosolibacter indicus         NaN  \n",
       "228                  Dawidia cretensis         NaN  \n",
       "229        Chryseosolibacter histidini         NaN  \n",
       "230          Streptococcus toyakuensis         NaN  \n",
       "231       Paenalcaligenes niemegkensis         NaN  \n",
       "599             Rhodobacter calidifons         NaN  \n",
       "600             Desmonostoc caucasicum         NaN  \n",
       "601             Desmonostoc caucasicum         NaN  \n",
       "602      Desulfovulcanus ferrireducens         NaN  \n",
       "648                      Nunduva kania         NaN  \n",
       "649                      Nunduva kania         NaN  \n",
       "650    Thermoleptolyngbya sichuanensis         NaN  \n",
       "...                                ...         ...  \n",
       "19444              Baaleninema simplex         NaN  \n",
       "19445              Baaleninema simplex         NaN  \n",
       "19446              Baaleninema simplex         NaN  \n",
       "19484                Limnospira indica         NaN  \n",
       "19506              Mobiluncus mulieris         NaN  \n",
       "19507              Mobiluncus mulieris         NaN  \n",
       "19533           Paracoccus bogoriensis         NaN  \n",
       "19546     Aurantimicrobium photophilum         NaN  \n",
       "19547            Helicobacter enhydrae         NaN  \n",
       "19548        Xanthomonas euvesicatoria         NaN  \n",
       "19554                Azoarcus communis         NaN  \n",
       "19585   Thermoanaerobacter ethanolicus         NaN  \n",
       "19615       Anaerobutyricum soehngenii         NaN  \n",
       "19616       Faecalibacterium duncaniae         NaN  \n",
       "19705     Mycolicibacterium acapulense         NaN  \n",
       "19720           Allochromatium tepidum         NaN  \n",
       "19757                Limnospira maxima         NaN  \n",
       "19758            Clostridium neonatale         NaN  \n",
       "19775                Neisseria weaveri         NaN  \n",
       "19780               Neisseria elongata         NaN  \n",
       "19802                  Kingella oralis         NaN  \n",
       "19804     Acinetobacter radioresistens         NaN  \n",
       "19818             Neorhizobium galegae         NaN  \n",
       "19819             Neorhizobium galegae         NaN  \n",
       "19867          Sphingomonas echinoides         NaN  \n",
       "19878         Bifidobacterium animalis         NaN  \n",
       "19887  Dehalobacterium formicoaceticum         NaN  \n",
       "19920                Leptospira inadai         NaN  \n",
       "19923            Acinetobacter lwoffii         NaN  \n",
       "19928               Rickettsia conorii         NaN  \n",
       "\n",
       "[5035 rows x 5 columns]"
      ]
     },
     "execution_count": 14,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "missing_df = combine_df[combine_df['NRaccession'].isna()]\n",
    "missing_df"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### this is a list of potential missing names in refseq however it's based on name match and strain forwarding differences generate false positives"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [],
   "source": [
    "missing_df.to_excel (r'C:\\Users\\mcveigh\\Documents\\PythonPC\\missing_type.xlsx', index = False, header=True)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### try another merge missing_df and refseqnames_df using the bionomial names. Need to create binomial names in each df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession_y</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>KY471031.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>AF082563.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>AF529062.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>KY471025.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_115134.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>KY471025.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_042319.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>MW111190.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_115134.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>MW111190.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_042319.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>MN905345.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_115134.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>MN905345.1</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>Aurantimonas coralicida</td>\n",
       "      <td>NR_042319.1</td>\n",
       "      <td>Aurantimonas coralicida DSM 14790</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>ON927072.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>MT849770.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>MN826232.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>MN567019.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>MN420808.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>ON927071.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>MT555308.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>MN955505.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>MN148634.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>MW970396.1</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>MW970386.1</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>MW182519.1</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>MW182518.1</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>MW182517.1</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>MW182516.1</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>LC650843.1</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>ON900080.1</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>ON328317.1</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>OM044129.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>OM044128.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>MZ048018.1</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28324</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Aeromicrobium marinum</td>\n",
       "      <td>NR_025681.1</td>\n",
       "      <td>Aeromicrobium marinum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28325</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Pseudoflavonifractor capillosus</td>\n",
       "      <td>NR_025670.1</td>\n",
       "      <td>Pseudoflavonifractor capillosus ATCC 29799</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28326</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Pseudoalteromonas translucida</td>\n",
       "      <td>NR_025655.1</td>\n",
       "      <td>Pseudoalteromonas translucida KMM 520</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28327</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Afipia massiliensis</td>\n",
       "      <td>NR_025646.1</td>\n",
       "      <td>Afipia massiliensis 34633</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28328</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Aquiflexum balticum</td>\n",
       "      <td>NR_025634.1</td>\n",
       "      <td>Aquiflexum balticum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28329</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Hymenobacter perfusus</td>\n",
       "      <td>NR_108903.1</td>\n",
       "      <td>Hymenobacter perfusus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28330</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Nisaea nitritireducens</td>\n",
       "      <td>NR_043924.1</td>\n",
       "      <td>Nisaea nitritireducens</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28331</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Dechloromonas hortensis</td>\n",
       "      <td>NR_042819.1</td>\n",
       "      <td>Dechloromonas hortensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28332</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Aeriscardovia aeriphila</td>\n",
       "      <td>NR_042759.1</td>\n",
       "      <td>Aeriscardovia aeriphila</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28333</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Deinococcus caeni</td>\n",
       "      <td>NR_043473.1</td>\n",
       "      <td>Deinococcus caeni</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28334</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Anoxybacillus pushchinoensis</td>\n",
       "      <td>NR_037100.1</td>\n",
       "      <td>Anoxybacillus pushchinoensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28335</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Bartonella clarridgeiae</td>\n",
       "      <td>NR_036961.1</td>\n",
       "      <td>Bartonella clarridgeiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28336</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Desulfovirga adipica</td>\n",
       "      <td>NR_036764.1</td>\n",
       "      <td>Desulfovirga adipica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28337</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Leuconostoc suionicum</td>\n",
       "      <td>NR_109003.1</td>\n",
       "      <td>Leuconostoc suionicum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28338</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Chitinophaga jiangningensis</td>\n",
       "      <td>NR_118590.1</td>\n",
       "      <td>Chitinophaga jiangningensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28339</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Acetoanaerobium sticklandii</td>\n",
       "      <td>NR_102880.1</td>\n",
       "      <td>Acetoanaerobium sticklandii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28340</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Chryseobacterium aquifrigidense</td>\n",
       "      <td>NR_044334.1</td>\n",
       "      <td>Chryseobacterium aquifrigidense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28341</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Mycolicibacterium phocaicum</td>\n",
       "      <td>NR_043237.1</td>\n",
       "      <td>Mycolicibacterium phocaicum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28342</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "      <td>NR_036983.1</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28343</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Borreliella valaisiana</td>\n",
       "      <td>NR_036807.1</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28344</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "      <td>NR_036806.1</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28345</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Legionella fallonii</td>\n",
       "      <td>NR_036805.1</td>\n",
       "      <td>Legionella fallonii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28346</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "      <td>NR_036804.1</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28347</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Legionella drozanskii</td>\n",
       "      <td>NR_036803.1</td>\n",
       "      <td>Legionella drozanskii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28348</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Staphylococcus lutrae</td>\n",
       "      <td>NR_036791.1</td>\n",
       "      <td>Staphylococcus lutrae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28349</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Glutamicibacter creatinolyticus</td>\n",
       "      <td>NR_036769.1</td>\n",
       "      <td>Glutamicibacter creatinolyticus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28350</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "      <td>NR_029049.1</td>\n",
       "      <td>Amycolatopsis rifamycinica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28351</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "      <td>NR_026347.1</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28352</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Halomonas koreensis</td>\n",
       "      <td>NR_025773.1</td>\n",
       "      <td>Halomonas koreensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28353</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "      <td>NR_147370.1</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>28354 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "        accession                      organism_x  \\\n",
       "0      KY471031.1     Pseudoalteromonas fuliginea   \n",
       "1      AF082563.1     Pseudoalteromonas fuliginea   \n",
       "2      AF529062.1     Pseudoalteromonas fuliginea   \n",
       "3      KY471025.1         Aurantimonas coralicida   \n",
       "4      KY471025.1         Aurantimonas coralicida   \n",
       "5      MW111190.1         Aurantimonas coralicida   \n",
       "6      MW111190.1         Aurantimonas coralicida   \n",
       "7      MN905345.1         Aurantimonas coralicida   \n",
       "8      MN905345.1         Aurantimonas coralicida   \n",
       "9      ON927072.1      Streptomyces broussonetiae   \n",
       "10     MT849770.1      Streptomyces broussonetiae   \n",
       "11     MN826232.1      Streptomyces broussonetiae   \n",
       "12     MN567019.1      Streptomyces broussonetiae   \n",
       "13     MN420808.1      Streptomyces broussonetiae   \n",
       "14     ON927071.1      Streptomyces phaeolivaceus   \n",
       "15     MT555308.1      Streptomyces phaeolivaceus   \n",
       "16     MN955505.1      Streptomyces phaeolivaceus   \n",
       "17     MN148634.1      Streptomyces phaeolivaceus   \n",
       "18     MW970396.1     Photocaulis sulfatitolerans   \n",
       "19     MW970386.1           Photocaulis rubescens   \n",
       "20     MW182519.1                    Dawidia soli   \n",
       "21     MW182518.1       Chryseosolibacter indicus   \n",
       "22     MW182517.1               Dawidia cretensis   \n",
       "23     MW182516.1     Chryseosolibacter histidini   \n",
       "24     LC650843.1       Streptococcus toyakuensis   \n",
       "25     ON900080.1    Paenalcaligenes niemegkensis   \n",
       "26     ON328317.1          Rhodobacter calidifons   \n",
       "27     OM044129.1  Desmonostoc caucasicum MZ-C154   \n",
       "28     OM044128.1  Desmonostoc caucasicum MZ-C154   \n",
       "29     MZ048018.1   Desulfovulcanus ferrireducens   \n",
       "...           ...                             ...   \n",
       "28324         NaN                             NaN   \n",
       "28325         NaN                             NaN   \n",
       "28326         NaN                             NaN   \n",
       "28327         NaN                             NaN   \n",
       "28328         NaN                             NaN   \n",
       "28329         NaN                             NaN   \n",
       "28330         NaN                             NaN   \n",
       "28331         NaN                             NaN   \n",
       "28332         NaN                             NaN   \n",
       "28333         NaN                             NaN   \n",
       "28334         NaN                             NaN   \n",
       "28335         NaN                             NaN   \n",
       "28336         NaN                             NaN   \n",
       "28337         NaN                             NaN   \n",
       "28338         NaN                             NaN   \n",
       "28339         NaN                             NaN   \n",
       "28340         NaN                             NaN   \n",
       "28341         NaN                             NaN   \n",
       "28342         NaN                             NaN   \n",
       "28343         NaN                             NaN   \n",
       "28344         NaN                             NaN   \n",
       "28345         NaN                             NaN   \n",
       "28346         NaN                             NaN   \n",
       "28347         NaN                             NaN   \n",
       "28348         NaN                             NaN   \n",
       "28349         NaN                             NaN   \n",
       "28350         NaN                             NaN   \n",
       "28351         NaN                             NaN   \n",
       "28352         NaN                             NaN   \n",
       "28353         NaN                             NaN   \n",
       "\n",
       "                               binomial NRaccession_y  \\\n",
       "0           Pseudoalteromonas fuliginea           NaN   \n",
       "1           Pseudoalteromonas fuliginea           NaN   \n",
       "2           Pseudoalteromonas fuliginea           NaN   \n",
       "3               Aurantimonas coralicida   NR_115134.1   \n",
       "4               Aurantimonas coralicida   NR_042319.1   \n",
       "5               Aurantimonas coralicida   NR_115134.1   \n",
       "6               Aurantimonas coralicida   NR_042319.1   \n",
       "7               Aurantimonas coralicida   NR_115134.1   \n",
       "8               Aurantimonas coralicida   NR_042319.1   \n",
       "9            Streptomyces broussonetiae           NaN   \n",
       "10           Streptomyces broussonetiae           NaN   \n",
       "11           Streptomyces broussonetiae           NaN   \n",
       "12           Streptomyces broussonetiae           NaN   \n",
       "13           Streptomyces broussonetiae           NaN   \n",
       "14           Streptomyces phaeolivaceus           NaN   \n",
       "15           Streptomyces phaeolivaceus           NaN   \n",
       "16           Streptomyces phaeolivaceus           NaN   \n",
       "17           Streptomyces phaeolivaceus           NaN   \n",
       "18          Photocaulis sulfatitolerans           NaN   \n",
       "19                Photocaulis rubescens           NaN   \n",
       "20                         Dawidia soli           NaN   \n",
       "21            Chryseosolibacter indicus           NaN   \n",
       "22                    Dawidia cretensis           NaN   \n",
       "23          Chryseosolibacter histidini           NaN   \n",
       "24            Streptococcus toyakuensis           NaN   \n",
       "25         Paenalcaligenes niemegkensis           NaN   \n",
       "26               Rhodobacter calidifons           NaN   \n",
       "27               Desmonostoc caucasicum           NaN   \n",
       "28               Desmonostoc caucasicum           NaN   \n",
       "29        Desulfovulcanus ferrireducens           NaN   \n",
       "...                                 ...           ...   \n",
       "28324             Aeromicrobium marinum   NR_025681.1   \n",
       "28325   Pseudoflavonifractor capillosus   NR_025670.1   \n",
       "28326     Pseudoalteromonas translucida   NR_025655.1   \n",
       "28327               Afipia massiliensis   NR_025646.1   \n",
       "28328               Aquiflexum balticum   NR_025634.1   \n",
       "28329             Hymenobacter perfusus   NR_108903.1   \n",
       "28330            Nisaea nitritireducens   NR_043924.1   \n",
       "28331           Dechloromonas hortensis   NR_042819.1   \n",
       "28332           Aeriscardovia aeriphila   NR_042759.1   \n",
       "28333                 Deinococcus caeni   NR_043473.1   \n",
       "28334      Anoxybacillus pushchinoensis   NR_037100.1   \n",
       "28335           Bartonella clarridgeiae   NR_036961.1   \n",
       "28336              Desulfovirga adipica   NR_036764.1   \n",
       "28337             Leuconostoc suionicum   NR_109003.1   \n",
       "28338       Chitinophaga jiangningensis   NR_118590.1   \n",
       "28339       Acetoanaerobium sticklandii   NR_102880.1   \n",
       "28340   Chryseobacterium aquifrigidense   NR_044334.1   \n",
       "28341       Mycolicibacterium phocaicum   NR_043237.1   \n",
       "28342                Thermus brockianus   NR_036983.1   \n",
       "28343            Borreliella valaisiana   NR_036807.1   \n",
       "28344            Borreliella lusitaniae   NR_036806.1   \n",
       "28345               Legionella fallonii   NR_036805.1   \n",
       "28346            Legionella rowbothamii   NR_036804.1   \n",
       "28347             Legionella drozanskii   NR_036803.1   \n",
       "28348             Staphylococcus lutrae   NR_036791.1   \n",
       "28349   Glutamicibacter creatinolyticus   NR_036769.1   \n",
       "28350        Amycolatopsis rifamycinica   NR_029049.1   \n",
       "28351              Clostridium isatidis   NR_026347.1   \n",
       "28352               Halomonas koreensis   NR_025773.1   \n",
       "28353  Pseudoflavonifractor phocaeensis   NR_147370.1   \n",
       "\n",
       "                                       organism_y  \n",
       "0                                             NaN  \n",
       "1                                             NaN  \n",
       "2                                             NaN  \n",
       "3               Aurantimonas coralicida DSM 14790  \n",
       "4               Aurantimonas coralicida DSM 14790  \n",
       "5               Aurantimonas coralicida DSM 14790  \n",
       "6               Aurantimonas coralicida DSM 14790  \n",
       "7               Aurantimonas coralicida DSM 14790  \n",
       "8               Aurantimonas coralicida DSM 14790  \n",
       "9                                             NaN  \n",
       "10                                            NaN  \n",
       "11                                            NaN  \n",
       "12                                            NaN  \n",
       "13                                            NaN  \n",
       "14                                            NaN  \n",
       "15                                            NaN  \n",
       "16                                            NaN  \n",
       "17                                            NaN  \n",
       "18                                            NaN  \n",
       "19                                            NaN  \n",
       "20                                            NaN  \n",
       "21                                            NaN  \n",
       "22                                            NaN  \n",
       "23                                            NaN  \n",
       "24                                            NaN  \n",
       "25                                            NaN  \n",
       "26                                            NaN  \n",
       "27                                            NaN  \n",
       "28                                            NaN  \n",
       "29                                            NaN  \n",
       "...                                           ...  \n",
       "28324                       Aeromicrobium marinum  \n",
       "28325  Pseudoflavonifractor capillosus ATCC 29799  \n",
       "28326       Pseudoalteromonas translucida KMM 520  \n",
       "28327                   Afipia massiliensis 34633  \n",
       "28328                         Aquiflexum balticum  \n",
       "28329                       Hymenobacter perfusus  \n",
       "28330                      Nisaea nitritireducens  \n",
       "28331                     Dechloromonas hortensis  \n",
       "28332                     Aeriscardovia aeriphila  \n",
       "28333                           Deinococcus caeni  \n",
       "28334                Anoxybacillus pushchinoensis  \n",
       "28335                     Bartonella clarridgeiae  \n",
       "28336                        Desulfovirga adipica  \n",
       "28337                       Leuconostoc suionicum  \n",
       "28338                 Chitinophaga jiangningensis  \n",
       "28339                 Acetoanaerobium sticklandii  \n",
       "28340             Chryseobacterium aquifrigidense  \n",
       "28341                 Mycolicibacterium phocaicum  \n",
       "28342                          Thermus brockianus  \n",
       "28343                Borreliella valaisiana VS116  \n",
       "28344                      Borreliella lusitaniae  \n",
       "28345                         Legionella fallonii  \n",
       "28346                      Legionella rowbothamii  \n",
       "28347                       Legionella drozanskii  \n",
       "28348                       Staphylococcus lutrae  \n",
       "28349             Glutamicibacter creatinolyticus  \n",
       "28350                  Amycolatopsis rifamycinica  \n",
       "28351                        Clostridium isatidis  \n",
       "28352                         Halomonas koreensis  \n",
       "28353            Pseudoflavonifractor phocaeensis  \n",
       "\n",
       "[28354 rows x 5 columns]"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "binomialmissing_df=pd.merge(left=missing_df, right=refseqnames_df, left_on='binomial', right_on='binomial', how = 'outer')\n",
    "#combine_df.drop_duplicates(subset=['type',], inplace=True)\n",
    "binomialmissing_df.drop(columns=['type','type_x','NRaccession_x'], inplace=True)\n",
    "binomialmissing_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession_y</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>KY471031.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>AF082563.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>AF529062.1</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>Pseudoalteromonas fuliginea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>ON927072.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>MT849770.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>MN826232.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>MN567019.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>MN420808.1</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>Streptomyces broussonetiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>ON927071.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>MT555308.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>MN955505.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>MN148634.1</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>Streptomyces phaeolivaceus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>MW970396.1</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>Photocaulis sulfatitolerans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>MW970386.1</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>Photocaulis rubescens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>MW182519.1</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>Dawidia soli</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>MW182518.1</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>Chryseosolibacter indicus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>MW182517.1</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>Dawidia cretensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>MW182516.1</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>Chryseosolibacter histidini</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>LC650843.1</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>Streptococcus toyakuensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>ON900080.1</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>Paenalcaligenes niemegkensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>ON328317.1</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>Rhodobacter calidifons</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>OM044129.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>OM044128.1</td>\n",
       "      <td>Desmonostoc caucasicum MZ-C154</td>\n",
       "      <td>Desmonostoc caucasicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>MZ048018.1</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>Desulfovulcanus ferrireducens</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>MF383372.1</td>\n",
       "      <td>Nunduva kania FCME C458-M16-K66</td>\n",
       "      <td>Nunduva kania</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>MF383371.1</td>\n",
       "      <td>Nunduva kania FCME C458-M16-K66</td>\n",
       "      <td>Nunduva kania</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>34</th>\n",
       "      <td>KT936570.1</td>\n",
       "      <td>Nunduva fasciculata FCME C1290-M9</td>\n",
       "      <td>Nunduva fasciculata</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35</th>\n",
       "      <td>KT936569.1</td>\n",
       "      <td>Nunduva fasciculata FCME C1290-M9</td>\n",
       "      <td>Nunduva fasciculata</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36</th>\n",
       "      <td>KT936568.1</td>\n",
       "      <td>Nunduva fasciculata FCME C694-M8-K148</td>\n",
       "      <td>Nunduva fasciculata</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>37</th>\n",
       "      <td>KT936567.1</td>\n",
       "      <td>Nunduva fasciculata FCME C694-M8-K148</td>\n",
       "      <td>Nunduva fasciculata</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6343</th>\n",
       "      <td>EU203590.2</td>\n",
       "      <td>Mycobacterium lepromatosis</td>\n",
       "      <td>Mycobacterium lepromatosis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6344</th>\n",
       "      <td>EU447162.1</td>\n",
       "      <td>Halomonas nitrilica</td>\n",
       "      <td>Halomonas nitrilica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6345</th>\n",
       "      <td>FJ265773.1</td>\n",
       "      <td>Streptosporangium minutum</td>\n",
       "      <td>Streptosporangium minutum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6346</th>\n",
       "      <td>AM911668.1</td>\n",
       "      <td>Pseudomonas promysalinigenes</td>\n",
       "      <td>Pseudomonas promysalinigenes</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6347</th>\n",
       "      <td>AM911665.1</td>\n",
       "      <td>Pseudomonas wayambapalatensis</td>\n",
       "      <td>Pseudomonas wayambapalatensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6348</th>\n",
       "      <td>AM911658.1</td>\n",
       "      <td>Pseudomonas vlassakiae</td>\n",
       "      <td>Pseudomonas vlassakiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6349</th>\n",
       "      <td>AM911650.1</td>\n",
       "      <td>Pseudomonas kurunegalensis</td>\n",
       "      <td>Pseudomonas kurunegalensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6350</th>\n",
       "      <td>AM911646.1</td>\n",
       "      <td>Pseudomonas oryzicola</td>\n",
       "      <td>Pseudomonas oryzicola</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6351</th>\n",
       "      <td>AM911640.1</td>\n",
       "      <td>Pseudomonas anuradhapurensis</td>\n",
       "      <td>Pseudomonas anuradhapurensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6352</th>\n",
       "      <td>EU031811.3</td>\n",
       "      <td>Francisella opportunistica</td>\n",
       "      <td>Francisella opportunistica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6353</th>\n",
       "      <td>AM711524.1</td>\n",
       "      <td>Desmonostoc muscorum</td>\n",
       "      <td>Desmonostoc muscorum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6354</th>\n",
       "      <td>EU359777.1</td>\n",
       "      <td>Paracoccus baruchii</td>\n",
       "      <td>Paracoccus baruchii</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6361</th>\n",
       "      <td>AB245355.1</td>\n",
       "      <td>Polaromonas ginsengisoli</td>\n",
       "      <td>Polaromonas ginsengisoli</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6362</th>\n",
       "      <td>AM888290.1</td>\n",
       "      <td>Hydrogenothermus shoalensis</td>\n",
       "      <td>Hydrogenothermus shoalensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6363</th>\n",
       "      <td>DQ202392.1</td>\n",
       "      <td>Streptomyces davaonensis JCM 4913</td>\n",
       "      <td>Streptomyces davaonensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6365</th>\n",
       "      <td>EF117246.1</td>\n",
       "      <td>Brasilonema sennae CENA114</td>\n",
       "      <td>Brasilonema sennae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6386</th>\n",
       "      <td>AB267721.1</td>\n",
       "      <td>Mucilaginibacter ginsenosidivorans</td>\n",
       "      <td>Mucilaginibacter ginsenosidivorans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6387</th>\n",
       "      <td>AY766327.1</td>\n",
       "      <td>Sporosarcina ureilytica</td>\n",
       "      <td>Sporosarcina ureilytica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6388</th>\n",
       "      <td>AF393781.1</td>\n",
       "      <td>Dehalobium chlorocoercia DF-1</td>\n",
       "      <td>Dehalobium chlorocoercia</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6395</th>\n",
       "      <td>X70769.2</td>\n",
       "      <td>Limnospira indica PCC 8005</td>\n",
       "      <td>Limnospira indica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6400</th>\n",
       "      <td>AJ580352.1</td>\n",
       "      <td>Paracoccus bogoriensis</td>\n",
       "      <td>Paracoccus bogoriensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6401</th>\n",
       "      <td>AJ507460.2</td>\n",
       "      <td>Aurantimicrobium photophilum</td>\n",
       "      <td>Aurantimicrobium photophilum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6402</th>\n",
       "      <td>AY203901.1</td>\n",
       "      <td>Helicobacter enhydrae</td>\n",
       "      <td>Helicobacter enhydrae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6407</th>\n",
       "      <td>AJ270490.2</td>\n",
       "      <td>Anaerobutyricum soehngenii</td>\n",
       "      <td>Anaerobutyricum soehngenii</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6408</th>\n",
       "      <td>AJ270469.2</td>\n",
       "      <td>Faecalibacterium duncaniae</td>\n",
       "      <td>Faecalibacterium duncaniae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6409</th>\n",
       "      <td>AF480575.1</td>\n",
       "      <td>Mycolicibacterium acapulense</td>\n",
       "      <td>Mycolicibacterium acapulense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6410</th>\n",
       "      <td>AF384209.1</td>\n",
       "      <td>Allochromatium tepidum</td>\n",
       "      <td>Allochromatium tepidum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6411</th>\n",
       "      <td>AF260509.2</td>\n",
       "      <td>Limnospira maxima UTEX LB 2720</td>\n",
       "      <td>Limnospira maxima</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6412</th>\n",
       "      <td>AF275949.1</td>\n",
       "      <td>Clostridium neonatale</td>\n",
       "      <td>Clostridium neonatale</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6427</th>\n",
       "      <td>X86690.1</td>\n",
       "      <td>Dehalobacterium formicoaceticum</td>\n",
       "      <td>Dehalobacterium formicoaceticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>4301 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "       accession                             organism_x  \\\n",
       "0     KY471031.1            Pseudoalteromonas fuliginea   \n",
       "1     AF082563.1            Pseudoalteromonas fuliginea   \n",
       "2     AF529062.1            Pseudoalteromonas fuliginea   \n",
       "9     ON927072.1             Streptomyces broussonetiae   \n",
       "10    MT849770.1             Streptomyces broussonetiae   \n",
       "11    MN826232.1             Streptomyces broussonetiae   \n",
       "12    MN567019.1             Streptomyces broussonetiae   \n",
       "13    MN420808.1             Streptomyces broussonetiae   \n",
       "14    ON927071.1             Streptomyces phaeolivaceus   \n",
       "15    MT555308.1             Streptomyces phaeolivaceus   \n",
       "16    MN955505.1             Streptomyces phaeolivaceus   \n",
       "17    MN148634.1             Streptomyces phaeolivaceus   \n",
       "18    MW970396.1            Photocaulis sulfatitolerans   \n",
       "19    MW970386.1                  Photocaulis rubescens   \n",
       "20    MW182519.1                           Dawidia soli   \n",
       "21    MW182518.1              Chryseosolibacter indicus   \n",
       "22    MW182517.1                      Dawidia cretensis   \n",
       "23    MW182516.1            Chryseosolibacter histidini   \n",
       "24    LC650843.1              Streptococcus toyakuensis   \n",
       "25    ON900080.1           Paenalcaligenes niemegkensis   \n",
       "26    ON328317.1                 Rhodobacter calidifons   \n",
       "27    OM044129.1         Desmonostoc caucasicum MZ-C154   \n",
       "28    OM044128.1         Desmonostoc caucasicum MZ-C154   \n",
       "29    MZ048018.1          Desulfovulcanus ferrireducens   \n",
       "30    MF383372.1        Nunduva kania FCME C458-M16-K66   \n",
       "31    MF383371.1        Nunduva kania FCME C458-M16-K66   \n",
       "34    KT936570.1      Nunduva fasciculata FCME C1290-M9   \n",
       "35    KT936569.1      Nunduva fasciculata FCME C1290-M9   \n",
       "36    KT936568.1  Nunduva fasciculata FCME C694-M8-K148   \n",
       "37    KT936567.1  Nunduva fasciculata FCME C694-M8-K148   \n",
       "...          ...                                    ...   \n",
       "6343  EU203590.2             Mycobacterium lepromatosis   \n",
       "6344  EU447162.1                    Halomonas nitrilica   \n",
       "6345  FJ265773.1              Streptosporangium minutum   \n",
       "6346  AM911668.1           Pseudomonas promysalinigenes   \n",
       "6347  AM911665.1          Pseudomonas wayambapalatensis   \n",
       "6348  AM911658.1                 Pseudomonas vlassakiae   \n",
       "6349  AM911650.1             Pseudomonas kurunegalensis   \n",
       "6350  AM911646.1                  Pseudomonas oryzicola   \n",
       "6351  AM911640.1           Pseudomonas anuradhapurensis   \n",
       "6352  EU031811.3             Francisella opportunistica   \n",
       "6353  AM711524.1                   Desmonostoc muscorum   \n",
       "6354  EU359777.1                    Paracoccus baruchii   \n",
       "6361  AB245355.1               Polaromonas ginsengisoli   \n",
       "6362  AM888290.1            Hydrogenothermus shoalensis   \n",
       "6363  DQ202392.1      Streptomyces davaonensis JCM 4913   \n",
       "6365  EF117246.1             Brasilonema sennae CENA114   \n",
       "6386  AB267721.1     Mucilaginibacter ginsenosidivorans   \n",
       "6387  AY766327.1                Sporosarcina ureilytica   \n",
       "6388  AF393781.1          Dehalobium chlorocoercia DF-1   \n",
       "6395    X70769.2             Limnospira indica PCC 8005   \n",
       "6400  AJ580352.1                 Paracoccus bogoriensis   \n",
       "6401  AJ507460.2           Aurantimicrobium photophilum   \n",
       "6402  AY203901.1                  Helicobacter enhydrae   \n",
       "6407  AJ270490.2             Anaerobutyricum soehngenii   \n",
       "6408  AJ270469.2             Faecalibacterium duncaniae   \n",
       "6409  AF480575.1           Mycolicibacterium acapulense   \n",
       "6410  AF384209.1                 Allochromatium tepidum   \n",
       "6411  AF260509.2         Limnospira maxima UTEX LB 2720   \n",
       "6412  AF275949.1                  Clostridium neonatale   \n",
       "6427    X86690.1        Dehalobacterium formicoaceticum   \n",
       "\n",
       "                                binomial NRaccession_y organism_y  \n",
       "0            Pseudoalteromonas fuliginea           NaN        NaN  \n",
       "1            Pseudoalteromonas fuliginea           NaN        NaN  \n",
       "2            Pseudoalteromonas fuliginea           NaN        NaN  \n",
       "9             Streptomyces broussonetiae           NaN        NaN  \n",
       "10            Streptomyces broussonetiae           NaN        NaN  \n",
       "11            Streptomyces broussonetiae           NaN        NaN  \n",
       "12            Streptomyces broussonetiae           NaN        NaN  \n",
       "13            Streptomyces broussonetiae           NaN        NaN  \n",
       "14            Streptomyces phaeolivaceus           NaN        NaN  \n",
       "15            Streptomyces phaeolivaceus           NaN        NaN  \n",
       "16            Streptomyces phaeolivaceus           NaN        NaN  \n",
       "17            Streptomyces phaeolivaceus           NaN        NaN  \n",
       "18           Photocaulis sulfatitolerans           NaN        NaN  \n",
       "19                 Photocaulis rubescens           NaN        NaN  \n",
       "20                          Dawidia soli           NaN        NaN  \n",
       "21             Chryseosolibacter indicus           NaN        NaN  \n",
       "22                     Dawidia cretensis           NaN        NaN  \n",
       "23           Chryseosolibacter histidini           NaN        NaN  \n",
       "24             Streptococcus toyakuensis           NaN        NaN  \n",
       "25          Paenalcaligenes niemegkensis           NaN        NaN  \n",
       "26                Rhodobacter calidifons           NaN        NaN  \n",
       "27                Desmonostoc caucasicum           NaN        NaN  \n",
       "28                Desmonostoc caucasicum           NaN        NaN  \n",
       "29         Desulfovulcanus ferrireducens           NaN        NaN  \n",
       "30                         Nunduva kania           NaN        NaN  \n",
       "31                         Nunduva kania           NaN        NaN  \n",
       "34                   Nunduva fasciculata           NaN        NaN  \n",
       "35                   Nunduva fasciculata           NaN        NaN  \n",
       "36                   Nunduva fasciculata           NaN        NaN  \n",
       "37                   Nunduva fasciculata           NaN        NaN  \n",
       "...                                  ...           ...        ...  \n",
       "6343          Mycobacterium lepromatosis           NaN        NaN  \n",
       "6344                 Halomonas nitrilica           NaN        NaN  \n",
       "6345           Streptosporangium minutum           NaN        NaN  \n",
       "6346        Pseudomonas promysalinigenes           NaN        NaN  \n",
       "6347       Pseudomonas wayambapalatensis           NaN        NaN  \n",
       "6348              Pseudomonas vlassakiae           NaN        NaN  \n",
       "6349          Pseudomonas kurunegalensis           NaN        NaN  \n",
       "6350               Pseudomonas oryzicola           NaN        NaN  \n",
       "6351        Pseudomonas anuradhapurensis           NaN        NaN  \n",
       "6352          Francisella opportunistica           NaN        NaN  \n",
       "6353                Desmonostoc muscorum           NaN        NaN  \n",
       "6354                 Paracoccus baruchii           NaN        NaN  \n",
       "6361            Polaromonas ginsengisoli           NaN        NaN  \n",
       "6362         Hydrogenothermus shoalensis           NaN        NaN  \n",
       "6363            Streptomyces davaonensis           NaN        NaN  \n",
       "6365                  Brasilonema sennae           NaN        NaN  \n",
       "6386  Mucilaginibacter ginsenosidivorans           NaN        NaN  \n",
       "6387             Sporosarcina ureilytica           NaN        NaN  \n",
       "6388            Dehalobium chlorocoercia           NaN        NaN  \n",
       "6395                   Limnospira indica           NaN        NaN  \n",
       "6400              Paracoccus bogoriensis           NaN        NaN  \n",
       "6401        Aurantimicrobium photophilum           NaN        NaN  \n",
       "6402               Helicobacter enhydrae           NaN        NaN  \n",
       "6407          Anaerobutyricum soehngenii           NaN        NaN  \n",
       "6408          Faecalibacterium duncaniae           NaN        NaN  \n",
       "6409        Mycolicibacterium acapulense           NaN        NaN  \n",
       "6410              Allochromatium tepidum           NaN        NaN  \n",
       "6411                   Limnospira maxima           NaN        NaN  \n",
       "6412               Clostridium neonatale           NaN        NaN  \n",
       "6427     Dehalobacterium formicoaceticum           NaN        NaN  \n",
       "\n",
       "[4301 rows x 5 columns]"
      ]
     },
     "execution_count": 32,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "missing2_df = binomialmissing_df[binomialmissing_df['NRaccession_y'].isna()]\n",
    "missing2_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [],
   "source": [
    "missing2_df.to_excel (r'C:\\Users\\mcveigh\\Documents\\PythonPC\\missing2_type.xlsx', index = False, header=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "ename": "KeyError",
     "evalue": "'organism_x'",
     "output_type": "error",
     "traceback": [
      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[1;31mKeyError\u001b[0m                                  Traceback (most recent call last)",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\indexes\\base.py\u001b[0m in \u001b[0;36mget_loc\u001b[1;34m(self, key, method, tolerance)\u001b[0m\n\u001b[0;32m   3062\u001b[0m             \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 3063\u001b[1;33m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_engine\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_loc\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   3064\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mKeyError\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\index.pyx\u001b[0m in \u001b[0;36mpandas._libs.index.IndexEngine.get_loc\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\index.pyx\u001b[0m in \u001b[0;36mpandas._libs.index.IndexEngine.get_loc\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\hashtable_class_helper.pxi\u001b[0m in \u001b[0;36mpandas._libs.hashtable.PyObjectHashTable.get_item\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\hashtable_class_helper.pxi\u001b[0m in \u001b[0;36mpandas._libs.hashtable.PyObjectHashTable.get_item\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;31mKeyError\u001b[0m: 'organism_x'",
      "\nDuring handling of the above exception, another exception occurred:\n",
      "\u001b[1;31mKeyError\u001b[0m                                  Traceback (most recent call last)",
      "\u001b[1;32m<ipython-input-9-6ace73064841>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mmatch_df\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mcombine_df\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mloc\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mcombine_df\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'organism_x'\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m==\u001b[0m \u001b[1;33m(\u001b[0m\u001b[0mcombine_df\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'organism_y'\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m      2\u001b[0m \u001b[0mmatch_df\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\frame.py\u001b[0m in \u001b[0;36m__getitem__\u001b[1;34m(self, key)\u001b[0m\n\u001b[0;32m   2683\u001b[0m             \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_getitem_multilevel\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2684\u001b[0m         \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 2685\u001b[1;33m             \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_getitem_column\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   2686\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2687\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0m_getitem_column\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\frame.py\u001b[0m in \u001b[0;36m_getitem_column\u001b[1;34m(self, key)\u001b[0m\n\u001b[0;32m   2690\u001b[0m         \u001b[1;31m# get column\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2691\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mcolumns\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mis_unique\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 2692\u001b[1;33m             \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_get_item_cache\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   2693\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2694\u001b[0m         \u001b[1;31m# duplicate columns & possible reduce dimensionality\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\generic.py\u001b[0m in \u001b[0;36m_get_item_cache\u001b[1;34m(self, item)\u001b[0m\n\u001b[0;32m   2484\u001b[0m         \u001b[0mres\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mcache\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2485\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[0mres\u001b[0m \u001b[1;32mis\u001b[0m \u001b[1;32mNone\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 2486\u001b[1;33m             \u001b[0mvalues\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_data\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   2487\u001b[0m             \u001b[0mres\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_box_item_values\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mvalues\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2488\u001b[0m             \u001b[0mcache\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mres\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\internals.py\u001b[0m in \u001b[0;36mget\u001b[1;34m(self, item, fastpath)\u001b[0m\n\u001b[0;32m   4113\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   4114\u001b[0m             \u001b[1;32mif\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[0misna\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 4115\u001b[1;33m                 \u001b[0mloc\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mitems\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_loc\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   4116\u001b[0m             \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   4117\u001b[0m                 \u001b[0mindexer\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0marange\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mlen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mitems\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0misna\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mitems\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mC:\\Apps\\User_Installs\\Anaconda\\lib\\site-packages\\pandas\\core\\indexes\\base.py\u001b[0m in \u001b[0;36mget_loc\u001b[1;34m(self, key, method, tolerance)\u001b[0m\n\u001b[0;32m   3063\u001b[0m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_engine\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_loc\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   3064\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mKeyError\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 3065\u001b[1;33m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_engine\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_loc\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_maybe_cast_indexer\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   3066\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   3067\u001b[0m         \u001b[0mindexer\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_indexer\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m[\u001b[0m\u001b[0mkey\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mmethod\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mmethod\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mtolerance\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mtolerance\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\index.pyx\u001b[0m in \u001b[0;36mpandas._libs.index.IndexEngine.get_loc\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\index.pyx\u001b[0m in \u001b[0;36mpandas._libs.index.IndexEngine.get_loc\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\hashtable_class_helper.pxi\u001b[0m in \u001b[0;36mpandas._libs.hashtable.PyObjectHashTable.get_item\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;32mpandas\\_libs\\hashtable_class_helper.pxi\u001b[0m in \u001b[0;36mpandas._libs.hashtable.PyObjectHashTable.get_item\u001b[1;34m()\u001b[0m\n",
      "\u001b[1;31mKeyError\u001b[0m: 'organism_x'"
     ]
    }
   ],
   "source": [
    "match_df = combine_df.loc[(combine_df['organism_x']) == (combine_df['organism_y'])]\n",
    "match_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 75,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>U07934.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_115793.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>U07934.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_113894.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>U07934.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_025953.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>AF345258.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_115793.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>AF345258.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_113894.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>AF345258.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_025953.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>DQ444456.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_115793.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>DQ444456.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_113894.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>DQ444456.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_025953.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>X58558.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_041745.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>X58558.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_113661.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>AY786574.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_041745.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>AY786574.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_113661.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>AF125583.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_041745.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>AF125583.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_113661.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>X58555.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_114563.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>X58555.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_113686.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>X58555.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>AF412982.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_114563.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>AF412982.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_113686.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>AF412982.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>AF258792.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_114563.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>AF258792.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_113686.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>AF258792.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_114563.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_113686.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>34</th>\n",
       "      <td>X58553.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_113683.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35</th>\n",
       "      <td>X58553.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_044666.2</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36</th>\n",
       "      <td>M24289.2</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_113683.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45306</th>\n",
       "      <td>CP002051.1</td>\n",
       "      <td>Staphylothermus hellenicus DSM 12710</td>\n",
       "      <td>type strain of Staphylothermus hellenicus</td>\n",
       "      <td>Staphylothermus hellenicus</td>\n",
       "      <td>NR_028877.1</td>\n",
       "      <td>Staphylothermus hellenicus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45311</th>\n",
       "      <td>AOLP01000013.1</td>\n",
       "      <td>Haloferax denitrificans ATCC 35960</td>\n",
       "      <td>type strain of Haloferax denitrificans</td>\n",
       "      <td>Haloferax denitrificans</td>\n",
       "      <td>NR_028215.1</td>\n",
       "      <td>Haloferax denitrificans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45312</th>\n",
       "      <td>AOLJ01000012.1</td>\n",
       "      <td>Haloferax gibbonsii ATCC 33959</td>\n",
       "      <td>type strain of Haloferax gibbonsii</td>\n",
       "      <td>Haloferax gibbonsii</td>\n",
       "      <td>NR_113441.1</td>\n",
       "      <td>Haloferax gibbonsii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45313</th>\n",
       "      <td>AOLJ01000012.1</td>\n",
       "      <td>Haloferax gibbonsii ATCC 33959</td>\n",
       "      <td>type strain of Haloferax gibbonsii</td>\n",
       "      <td>Haloferax gibbonsii</td>\n",
       "      <td>NR_028213.1</td>\n",
       "      <td>Haloferax gibbonsii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45314</th>\n",
       "      <td>AOLG01000014.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_113446.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45315</th>\n",
       "      <td>AOLG01000014.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_028165.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45316</th>\n",
       "      <td>AOLG01000024.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_113446.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45317</th>\n",
       "      <td>AOLG01000024.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_028165.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45318</th>\n",
       "      <td>AOLG01000037.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_113446.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45319</th>\n",
       "      <td>AOLG01000037.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_028165.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45320</th>\n",
       "      <td>AOLG01000044.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_113446.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45321</th>\n",
       "      <td>AOLG01000044.1</td>\n",
       "      <td>Haloferax prahovense DSM 18310</td>\n",
       "      <td>type strain of Haloferax prahovense</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "      <td>NR_028165.1</td>\n",
       "      <td>Haloferax prahovense</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45323</th>\n",
       "      <td>AOIW01000023.1</td>\n",
       "      <td>Halorubrum terrestre JCM 10247</td>\n",
       "      <td>type strain of Halorubrum terrestre</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "      <td>NR_113487.1</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45324</th>\n",
       "      <td>AOIW01000023.1</td>\n",
       "      <td>Halorubrum terrestre JCM 10247</td>\n",
       "      <td>type strain of Halorubrum terrestre</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "      <td>NR_028160.1</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45325</th>\n",
       "      <td>AOIW01000062.1</td>\n",
       "      <td>Halorubrum terrestre JCM 10247</td>\n",
       "      <td>type strain of Halorubrum terrestre</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "      <td>NR_113487.1</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45326</th>\n",
       "      <td>AOIW01000062.1</td>\n",
       "      <td>Halorubrum terrestre JCM 10247</td>\n",
       "      <td>type strain of Halorubrum terrestre</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "      <td>NR_028160.1</td>\n",
       "      <td>Halorubrum terrestre</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45327</th>\n",
       "      <td>AOIS01000070.1</td>\n",
       "      <td>Haloterrigena salina JCM 13891</td>\n",
       "      <td>type strain of Haloterrigena salina</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "      <td>NR_113513.1</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45328</th>\n",
       "      <td>AOIS01000070.1</td>\n",
       "      <td>Haloterrigena salina JCM 13891</td>\n",
       "      <td>type strain of Haloterrigena salina</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "      <td>NR_028190.1</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45329</th>\n",
       "      <td>AOIP01000005.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_113518.1</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45330</th>\n",
       "      <td>AOIP01000005.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_028176.1</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45331</th>\n",
       "      <td>AOIP01000006.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_113518.1</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45332</th>\n",
       "      <td>AOIP01000006.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_028176.1</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45333</th>\n",
       "      <td>AOIO01000040.1</td>\n",
       "      <td>Natrialba asiatica DSM 12278</td>\n",
       "      <td>type strain of Natrialba asiatica</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "      <td>NR_113519.1</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45334</th>\n",
       "      <td>AOIO01000040.1</td>\n",
       "      <td>Natrialba asiatica DSM 12278</td>\n",
       "      <td>type strain of Natrialba asiatica</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "      <td>NR_028214.1</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45335</th>\n",
       "      <td>AOIL01000067.1</td>\n",
       "      <td>Natrialba taiwanensis DSM 12281</td>\n",
       "      <td>type strain of Natrialba taiwanensis</td>\n",
       "      <td>Natrialba taiwanensis</td>\n",
       "      <td>NR_029124.1</td>\n",
       "      <td>Natrialba taiwanensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45336</th>\n",
       "      <td>AOHZ01000042.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus JCM 12255</td>\n",
       "      <td>type strain of Natronolimnobius innermongolicus</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "      <td>NR_113536.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45337</th>\n",
       "      <td>AOHZ01000042.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus JCM 12255</td>\n",
       "      <td>type strain of Natronolimnobius innermongolicus</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "      <td>NR_028162.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45338</th>\n",
       "      <td>AF095264.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>type strain of Methanobacterium thermaggregans</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>NR_114486.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45339</th>\n",
       "      <td>AF095264.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>type strain of Methanobacterium thermaggregans</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>NR_113572.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45340</th>\n",
       "      <td>AF095264.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>type strain of Methanobacterium thermaggregans</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>NR_104880.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>39237 rows × 6 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "            accession                                      organism_x  \\\n",
       "0            U07934.1                            Mesorhizobium ciceri   \n",
       "1            U07934.1                            Mesorhizobium ciceri   \n",
       "2            U07934.1                            Mesorhizobium ciceri   \n",
       "3          AF345258.1                            Mesorhizobium ciceri   \n",
       "4          AF345258.1                            Mesorhizobium ciceri   \n",
       "5          AF345258.1                            Mesorhizobium ciceri   \n",
       "6          DQ444456.1                            Mesorhizobium ciceri   \n",
       "7          DQ444456.1                            Mesorhizobium ciceri   \n",
       "8          DQ444456.1                            Mesorhizobium ciceri   \n",
       "13           X58558.1                       Metamycoplasma salivarium   \n",
       "14           X58558.1                       Metamycoplasma salivarium   \n",
       "15         AY786574.1                       Metamycoplasma salivarium   \n",
       "16         AY786574.1                       Metamycoplasma salivarium   \n",
       "17         AF125583.1                       Metamycoplasma salivarium   \n",
       "18         AF125583.1                       Metamycoplasma salivarium   \n",
       "19           X58555.1                        Mesomycoplasma hyorhinis   \n",
       "20           X58555.1                        Mesomycoplasma hyorhinis   \n",
       "21           X58555.1                        Mesomycoplasma hyorhinis   \n",
       "22         AF412982.1                        Mesomycoplasma hyorhinis   \n",
       "23         AF412982.1                        Mesomycoplasma hyorhinis   \n",
       "24         AF412982.1                        Mesomycoplasma hyorhinis   \n",
       "25         AF258792.1                        Mesomycoplasma hyorhinis   \n",
       "26         AF258792.1                        Mesomycoplasma hyorhinis   \n",
       "27         AF258792.1                        Mesomycoplasma hyorhinis   \n",
       "28         GU227372.1             Mesomycoplasma hyorhinis ATCC 17981   \n",
       "29         GU227372.1             Mesomycoplasma hyorhinis ATCC 17981   \n",
       "30         GU227372.1             Mesomycoplasma hyorhinis ATCC 17981   \n",
       "34           X58553.1                       Mycoplasmopsis fermentans   \n",
       "35           X58553.1                       Mycoplasmopsis fermentans   \n",
       "36           M24289.2                       Mycoplasmopsis fermentans   \n",
       "...               ...                                             ...   \n",
       "45306      CP002051.1            Staphylothermus hellenicus DSM 12710   \n",
       "45311  AOLP01000013.1              Haloferax denitrificans ATCC 35960   \n",
       "45312  AOLJ01000012.1                  Haloferax gibbonsii ATCC 33959   \n",
       "45313  AOLJ01000012.1                  Haloferax gibbonsii ATCC 33959   \n",
       "45314  AOLG01000014.1                  Haloferax prahovense DSM 18310   \n",
       "45315  AOLG01000014.1                  Haloferax prahovense DSM 18310   \n",
       "45316  AOLG01000024.1                  Haloferax prahovense DSM 18310   \n",
       "45317  AOLG01000024.1                  Haloferax prahovense DSM 18310   \n",
       "45318  AOLG01000037.1                  Haloferax prahovense DSM 18310   \n",
       "45319  AOLG01000037.1                  Haloferax prahovense DSM 18310   \n",
       "45320  AOLG01000044.1                  Haloferax prahovense DSM 18310   \n",
       "45321  AOLG01000044.1                  Haloferax prahovense DSM 18310   \n",
       "45323  AOIW01000023.1                  Halorubrum terrestre JCM 10247   \n",
       "45324  AOIW01000023.1                  Halorubrum terrestre JCM 10247   \n",
       "45325  AOIW01000062.1                  Halorubrum terrestre JCM 10247   \n",
       "45326  AOIW01000062.1                  Halorubrum terrestre JCM 10247   \n",
       "45327  AOIS01000070.1                  Haloterrigena salina JCM 13891   \n",
       "45328  AOIS01000070.1                  Haloterrigena salina JCM 13891   \n",
       "45329  AOIP01000005.1                    Natrialba aegyptia DSM 13077   \n",
       "45330  AOIP01000005.1                    Natrialba aegyptia DSM 13077   \n",
       "45331  AOIP01000006.1                    Natrialba aegyptia DSM 13077   \n",
       "45332  AOIP01000006.1                    Natrialba aegyptia DSM 13077   \n",
       "45333  AOIO01000040.1                    Natrialba asiatica DSM 12278   \n",
       "45334  AOIO01000040.1                    Natrialba asiatica DSM 12278   \n",
       "45335  AOIL01000067.1                 Natrialba taiwanensis DSM 12281   \n",
       "45336  AOHZ01000042.1  Natronolimnohabitans innermongolicus JCM 12255   \n",
       "45337  AOHZ01000042.1  Natronolimnohabitans innermongolicus JCM 12255   \n",
       "45338      AF095264.1                 Methanobacterium thermaggregans   \n",
       "45339      AF095264.1                 Methanobacterium thermaggregans   \n",
       "45340      AF095264.1                 Methanobacterium thermaggregans   \n",
       "\n",
       "                                                type_x  \\\n",
       "0                      type strain of Rhizobium ciceri   \n",
       "1                      type strain of Rhizobium ciceri   \n",
       "2                      type strain of Rhizobium ciceri   \n",
       "3                      type strain of Rhizobium ciceri   \n",
       "4                      type strain of Rhizobium ciceri   \n",
       "5                      type strain of Rhizobium ciceri   \n",
       "6                      type strain of Rhizobium ciceri   \n",
       "7                      type strain of Rhizobium ciceri   \n",
       "8                      type strain of Rhizobium ciceri   \n",
       "13                type strain of Mycoplasma salivarium   \n",
       "14                type strain of Mycoplasma salivarium   \n",
       "15                type strain of Mycoplasma salivarium   \n",
       "16                type strain of Mycoplasma salivarium   \n",
       "17                                                 NaN   \n",
       "18                                                 NaN   \n",
       "19                 type strain of Mycoplasma hyorhinis   \n",
       "20                 type strain of Mycoplasma hyorhinis   \n",
       "21                 type strain of Mycoplasma hyorhinis   \n",
       "22                 type strain of Mycoplasma hyorhinis   \n",
       "23                 type strain of Mycoplasma hyorhinis   \n",
       "24                 type strain of Mycoplasma hyorhinis   \n",
       "25                 type strain of Mycoplasma hyorhinis   \n",
       "26                 type strain of Mycoplasma hyorhinis   \n",
       "27                 type strain of Mycoplasma hyorhinis   \n",
       "28                 type strain of Mycoplasma hyorhinis   \n",
       "29                 type strain of Mycoplasma hyorhinis   \n",
       "30                 type strain of Mycoplasma hyorhinis   \n",
       "34                type strain of Mycoplasma fermentans   \n",
       "35                type strain of Mycoplasma fermentans   \n",
       "36                type strain of Mycoplasma fermentans   \n",
       "...                                                ...   \n",
       "45306        type strain of Staphylothermus hellenicus   \n",
       "45311           type strain of Haloferax denitrificans   \n",
       "45312               type strain of Haloferax gibbonsii   \n",
       "45313               type strain of Haloferax gibbonsii   \n",
       "45314              type strain of Haloferax prahovense   \n",
       "45315              type strain of Haloferax prahovense   \n",
       "45316              type strain of Haloferax prahovense   \n",
       "45317              type strain of Haloferax prahovense   \n",
       "45318              type strain of Haloferax prahovense   \n",
       "45319              type strain of Haloferax prahovense   \n",
       "45320              type strain of Haloferax prahovense   \n",
       "45321              type strain of Haloferax prahovense   \n",
       "45323              type strain of Halorubrum terrestre   \n",
       "45324              type strain of Halorubrum terrestre   \n",
       "45325              type strain of Halorubrum terrestre   \n",
       "45326              type strain of Halorubrum terrestre   \n",
       "45327              type strain of Haloterrigena salina   \n",
       "45328              type strain of Haloterrigena salina   \n",
       "45329                type strain of Natrialba aegyptia   \n",
       "45330                type strain of Natrialba aegyptia   \n",
       "45331                type strain of Natrialba aegyptia   \n",
       "45332                type strain of Natrialba aegyptia   \n",
       "45333                type strain of Natrialba asiatica   \n",
       "45334                type strain of Natrialba asiatica   \n",
       "45335             type strain of Natrialba taiwanensis   \n",
       "45336  type strain of Natronolimnobius innermongolicus   \n",
       "45337  type strain of Natronolimnobius innermongolicus   \n",
       "45338   type strain of Methanobacterium thermaggregans   \n",
       "45339   type strain of Methanobacterium thermaggregans   \n",
       "45340   type strain of Methanobacterium thermaggregans   \n",
       "\n",
       "                                   binomial  NRaccession  \\\n",
       "0                      Mesorhizobium ciceri  NR_115793.1   \n",
       "1                      Mesorhizobium ciceri  NR_113894.1   \n",
       "2                      Mesorhizobium ciceri  NR_025953.1   \n",
       "3                      Mesorhizobium ciceri  NR_115793.1   \n",
       "4                      Mesorhizobium ciceri  NR_113894.1   \n",
       "5                      Mesorhizobium ciceri  NR_025953.1   \n",
       "6                      Mesorhizobium ciceri  NR_115793.1   \n",
       "7                      Mesorhizobium ciceri  NR_113894.1   \n",
       "8                      Mesorhizobium ciceri  NR_025953.1   \n",
       "13                Metamycoplasma salivarium  NR_041745.1   \n",
       "14                Metamycoplasma salivarium  NR_113661.1   \n",
       "15                Metamycoplasma salivarium  NR_041745.1   \n",
       "16                Metamycoplasma salivarium  NR_113661.1   \n",
       "17                Metamycoplasma salivarium  NR_041745.1   \n",
       "18                Metamycoplasma salivarium  NR_113661.1   \n",
       "19                 Mesomycoplasma hyorhinis  NR_114563.1   \n",
       "20                 Mesomycoplasma hyorhinis  NR_113686.1   \n",
       "21                 Mesomycoplasma hyorhinis  NR_041845.1   \n",
       "22                 Mesomycoplasma hyorhinis  NR_114563.1   \n",
       "23                 Mesomycoplasma hyorhinis  NR_113686.1   \n",
       "24                 Mesomycoplasma hyorhinis  NR_041845.1   \n",
       "25                 Mesomycoplasma hyorhinis  NR_114563.1   \n",
       "26                 Mesomycoplasma hyorhinis  NR_113686.1   \n",
       "27                 Mesomycoplasma hyorhinis  NR_041845.1   \n",
       "28                 Mesomycoplasma hyorhinis  NR_114563.1   \n",
       "29                 Mesomycoplasma hyorhinis  NR_113686.1   \n",
       "30                 Mesomycoplasma hyorhinis  NR_041845.1   \n",
       "34                Mycoplasmopsis fermentans  NR_113683.1   \n",
       "35                Mycoplasmopsis fermentans  NR_044666.2   \n",
       "36                Mycoplasmopsis fermentans  NR_113683.1   \n",
       "...                                     ...          ...   \n",
       "45306            Staphylothermus hellenicus  NR_028877.1   \n",
       "45311               Haloferax denitrificans  NR_028215.1   \n",
       "45312                   Haloferax gibbonsii  NR_113441.1   \n",
       "45313                   Haloferax gibbonsii  NR_028213.1   \n",
       "45314                  Haloferax prahovense  NR_113446.1   \n",
       "45315                  Haloferax prahovense  NR_028165.1   \n",
       "45316                  Haloferax prahovense  NR_113446.1   \n",
       "45317                  Haloferax prahovense  NR_028165.1   \n",
       "45318                  Haloferax prahovense  NR_113446.1   \n",
       "45319                  Haloferax prahovense  NR_028165.1   \n",
       "45320                  Haloferax prahovense  NR_113446.1   \n",
       "45321                  Haloferax prahovense  NR_028165.1   \n",
       "45323                  Halorubrum terrestre  NR_113487.1   \n",
       "45324                  Halorubrum terrestre  NR_028160.1   \n",
       "45325                  Halorubrum terrestre  NR_113487.1   \n",
       "45326                  Halorubrum terrestre  NR_028160.1   \n",
       "45327                  Haloterrigena salina  NR_113513.1   \n",
       "45328                  Haloterrigena salina  NR_028190.1   \n",
       "45329                    Natrialba aegyptia  NR_113518.1   \n",
       "45330                    Natrialba aegyptia  NR_028176.1   \n",
       "45331                    Natrialba aegyptia  NR_113518.1   \n",
       "45332                    Natrialba aegyptia  NR_028176.1   \n",
       "45333                    Natrialba asiatica  NR_113519.1   \n",
       "45334                    Natrialba asiatica  NR_028214.1   \n",
       "45335                 Natrialba taiwanensis  NR_029124.1   \n",
       "45336  Natronolimnohabitans innermongolicus  NR_113536.1   \n",
       "45337  Natronolimnohabitans innermongolicus  NR_028162.1   \n",
       "45338       Methanobacterium thermaggregans  NR_114486.1   \n",
       "45339       Methanobacterium thermaggregans  NR_113572.1   \n",
       "45340       Methanobacterium thermaggregans  NR_104880.1   \n",
       "\n",
       "                                 organism_y  \n",
       "0                      Mesorhizobium ciceri  \n",
       "1                      Mesorhizobium ciceri  \n",
       "2                      Mesorhizobium ciceri  \n",
       "3                      Mesorhizobium ciceri  \n",
       "4                      Mesorhizobium ciceri  \n",
       "5                      Mesorhizobium ciceri  \n",
       "6                      Mesorhizobium ciceri  \n",
       "7                      Mesorhizobium ciceri  \n",
       "8                      Mesorhizobium ciceri  \n",
       "13                Metamycoplasma salivarium  \n",
       "14                Metamycoplasma salivarium  \n",
       "15                Metamycoplasma salivarium  \n",
       "16                Metamycoplasma salivarium  \n",
       "17                Metamycoplasma salivarium  \n",
       "18                Metamycoplasma salivarium  \n",
       "19                 Mesomycoplasma hyorhinis  \n",
       "20                 Mesomycoplasma hyorhinis  \n",
       "21                 Mesomycoplasma hyorhinis  \n",
       "22                 Mesomycoplasma hyorhinis  \n",
       "23                 Mesomycoplasma hyorhinis  \n",
       "24                 Mesomycoplasma hyorhinis  \n",
       "25                 Mesomycoplasma hyorhinis  \n",
       "26                 Mesomycoplasma hyorhinis  \n",
       "27                 Mesomycoplasma hyorhinis  \n",
       "28                 Mesomycoplasma hyorhinis  \n",
       "29                 Mesomycoplasma hyorhinis  \n",
       "30                 Mesomycoplasma hyorhinis  \n",
       "34                Mycoplasmopsis fermentans  \n",
       "35                Mycoplasmopsis fermentans  \n",
       "36                Mycoplasmopsis fermentans  \n",
       "...                                     ...  \n",
       "45306            Staphylothermus hellenicus  \n",
       "45311               Haloferax denitrificans  \n",
       "45312                   Haloferax gibbonsii  \n",
       "45313                   Haloferax gibbonsii  \n",
       "45314                  Haloferax prahovense  \n",
       "45315                  Haloferax prahovense  \n",
       "45316                  Haloferax prahovense  \n",
       "45317                  Haloferax prahovense  \n",
       "45318                  Haloferax prahovense  \n",
       "45319                  Haloferax prahovense  \n",
       "45320                  Haloferax prahovense  \n",
       "45321                  Haloferax prahovense  \n",
       "45323                  Halorubrum terrestre  \n",
       "45324                  Halorubrum terrestre  \n",
       "45325                  Halorubrum terrestre  \n",
       "45326                  Halorubrum terrestre  \n",
       "45327                  Haloterrigena salina  \n",
       "45328                  Haloterrigena salina  \n",
       "45329                    Natrialba aegyptia  \n",
       "45330                    Natrialba aegyptia  \n",
       "45331                    Natrialba aegyptia  \n",
       "45332                    Natrialba aegyptia  \n",
       "45333                    Natrialba asiatica  \n",
       "45334                    Natrialba asiatica  \n",
       "45335                 Natrialba taiwanensis  \n",
       "45336  Natronolimnohabitans innermongolicus  \n",
       "45337  Natronolimnohabitans innermongolicus  \n",
       "45338       Methanobacterium thermaggregans  \n",
       "45339       Methanobacterium thermaggregans  \n",
       "45340       Methanobacterium thermaggregans  \n",
       "\n",
       "[39237 rows x 6 columns]"
      ]
     },
     "execution_count": 75,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "bimatch_df = combine_df.loc[(combine_df['binomial']) == (combine_df['organism_y'])]\n",
    "bimatch_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 77,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "\n",
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       "        vertical-align: top;\n",
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       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>X58561.1</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>AY741673.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>AF073450.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>AF059330.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_114563.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_113686.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>GU227372.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis ATCC 17981</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>X58559.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>32</th>\n",
       "      <td>M24473.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>33</th>\n",
       "      <td>JN935871.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>38</th>\n",
       "      <td>NC_021002.1</td>\n",
       "      <td>Mycoplasmopsis fermentans PG18</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_113683.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>39</th>\n",
       "      <td>NC_021002.1</td>\n",
       "      <td>Mycoplasmopsis fermentans PG18</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_044666.2</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50</th>\n",
       "      <td>FUEZ00000000.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>51</th>\n",
       "      <td>FUEZ01000004.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>52</th>\n",
       "      <td>FUFA00000000.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>53</th>\n",
       "      <td>FUFA01000004.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>LT721901.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>55</th>\n",
       "      <td>FTRV00000000.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>56</th>\n",
       "      <td>FTRV01000016.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>57</th>\n",
       "      <td>LT717701.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>58</th>\n",
       "      <td>FXEG00000000.2</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>59</th>\n",
       "      <td>FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>60</th>\n",
       "      <td>NZ_FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>61</th>\n",
       "      <td>NZ_FXEG02000002.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>79</th>\n",
       "      <td>M65011.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_118514.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>80</th>\n",
       "      <td>M65011.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_043597.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>81</th>\n",
       "      <td>L14633.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_118514.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>82</th>\n",
       "      <td>L14633.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_043597.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>83</th>\n",
       "      <td>JX912514.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_118514.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>JX912514.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_043597.1</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50415</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026025.1</td>\n",
       "      <td>Riemerella anatipestifer ATCC 11845 = DSM 15868</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50416</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025989.1</td>\n",
       "      <td>Mesomycoplasma ovipneumoniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50417</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025979.1</td>\n",
       "      <td>Desulfofundulus thermocisternus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50418</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025971.1</td>\n",
       "      <td>Mycoplasma putrefaciens KS1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50419</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025959.1</td>\n",
       "      <td>Polaribacter franzmannii ATCC 700399</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50420</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025855.1</td>\n",
       "      <td>Afifella marina</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50421</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025768.1</td>\n",
       "      <td>Nocardiopsis salina YIM 90010</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50422</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025681.1</td>\n",
       "      <td>Aeromicrobium marinum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50423</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025680.1</td>\n",
       "      <td>Dialister invisus DSM 15470</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50424</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025670.1</td>\n",
       "      <td>Pseudoflavonifractor capillosus ATCC 29799</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50425</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025655.1</td>\n",
       "      <td>Pseudoalteromonas translucida KMM 520</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50426</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025646.1</td>\n",
       "      <td>Afipia massiliensis 34633</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50427</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_042943.1</td>\n",
       "      <td>Sphingobium indicum B90A</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50428</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037100.1</td>\n",
       "      <td>Anoxybacillus pushchinoensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50429</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037084.1</td>\n",
       "      <td>Klebsiella pneumoniae subsp. rhinoscleromatis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50430</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037019.1</td>\n",
       "      <td>Photobacterium damselae subsp. piscicida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50431</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036961.1</td>\n",
       "      <td>Bartonella clarridgeiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50432</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_102880.1</td>\n",
       "      <td>Acetoanaerobium sticklandii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50433</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036983.1</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50434</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036972.1</td>\n",
       "      <td>Propionibacterium freudenreichii subsp. shermanii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50435</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036912.1</td>\n",
       "      <td>Selenomonas ruminantium subsp. lactilytica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50436</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036884.1</td>\n",
       "      <td>Nonomuraea roseoviolacea subsp. carminata</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50437</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036809.1</td>\n",
       "      <td>Listeria ivanovii subsp. londoniensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50438</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036807.1</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50439</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036806.1</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50440</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036804.1</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50441</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NG_041947.1</td>\n",
       "      <td>Ruminiclostridium cellulolyticum H10</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50442</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026347.1</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50443</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026295.1</td>\n",
       "      <td>Couchioplanes caeruleus subsp. azureus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50444</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_147370.1</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>16468 rows × 6 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "               accession                                        organism_x  \\\n",
       "9               X58561.1                            Ureaplasma urealyticum   \n",
       "10            AY741673.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "11            AF073450.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "12            AF059330.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "28            GU227372.1               Mesomycoplasma hyorhinis ATCC 17981   \n",
       "29            GU227372.1               Mesomycoplasma hyorhinis ATCC 17981   \n",
       "30            GU227372.1               Mesomycoplasma hyorhinis ATCC 17981   \n",
       "31              X58559.1                     Mycoplasma hominis ATCC 23114   \n",
       "32              M24473.1                     Mycoplasma hominis ATCC 23114   \n",
       "33            JN935871.1                     Mycoplasma hominis ATCC 23114   \n",
       "38           NC_021002.1                    Mycoplasmopsis fermentans PG18   \n",
       "39           NC_021002.1                    Mycoplasmopsis fermentans PG18   \n",
       "50        FUEZ00000000.1                  Mycobacterium numidiamassiliense   \n",
       "51        FUEZ01000004.1                  Mycobacterium numidiamassiliense   \n",
       "52        FUFA00000000.1                    Mycobacterium rhizamassiliense   \n",
       "53        FUFA01000004.1                    Mycobacterium rhizamassiliense   \n",
       "54            LT721901.1                    Mycobacterium rhizamassiliense   \n",
       "55        FTRV00000000.1                    Mycobacterium terramassiliense   \n",
       "56        FTRV01000016.1                    Mycobacterium terramassiliense   \n",
       "57            LT717701.1                    Mycobacterium terramassiliense   \n",
       "58        FXEG00000000.2                           Mycobacterium ahvazicum   \n",
       "59        FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "60     NZ_FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "61     NZ_FXEG02000002.1                           Mycobacterium ahvazicum   \n",
       "79              M65011.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "80              M65011.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "81              L14633.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "82              L14633.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "83            JX912514.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "84            JX912514.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "...                  ...                                               ...   \n",
       "50415                NaN                                               NaN   \n",
       "50416                NaN                                               NaN   \n",
       "50417                NaN                                               NaN   \n",
       "50418                NaN                                               NaN   \n",
       "50419                NaN                                               NaN   \n",
       "50420                NaN                                               NaN   \n",
       "50421                NaN                                               NaN   \n",
       "50422                NaN                                               NaN   \n",
       "50423                NaN                                               NaN   \n",
       "50424                NaN                                               NaN   \n",
       "50425                NaN                                               NaN   \n",
       "50426                NaN                                               NaN   \n",
       "50427                NaN                                               NaN   \n",
       "50428                NaN                                               NaN   \n",
       "50429                NaN                                               NaN   \n",
       "50430                NaN                                               NaN   \n",
       "50431                NaN                                               NaN   \n",
       "50432                NaN                                               NaN   \n",
       "50433                NaN                                               NaN   \n",
       "50434                NaN                                               NaN   \n",
       "50435                NaN                                               NaN   \n",
       "50436                NaN                                               NaN   \n",
       "50437                NaN                                               NaN   \n",
       "50438                NaN                                               NaN   \n",
       "50439                NaN                                               NaN   \n",
       "50440                NaN                                               NaN   \n",
       "50441                NaN                                               NaN   \n",
       "50442                NaN                                               NaN   \n",
       "50443                NaN                                               NaN   \n",
       "50444                NaN                                               NaN   \n",
       "\n",
       "                                                  type_x  \\\n",
       "9                  type strain of Ureaplasma urealyticum   \n",
       "10                 type strain of Ureaplasma urealyticum   \n",
       "11                 type strain of Ureaplasma urealyticum   \n",
       "12                 type strain of Ureaplasma urealyticum   \n",
       "28                   type strain of Mycoplasma hyorhinis   \n",
       "29                   type strain of Mycoplasma hyorhinis   \n",
       "30                   type strain of Mycoplasma hyorhinis   \n",
       "31                     type strain of Mycoplasma hominis   \n",
       "32                     type strain of Mycoplasma hominis   \n",
       "33                     type strain of Mycoplasma hominis   \n",
       "38                  type strain of Mycoplasma fermentans   \n",
       "39                  type strain of Mycoplasma fermentans   \n",
       "50     type material of Mycobacterium numidiamassiliense   \n",
       "51     type material of Mycobacterium numidiamassiliense   \n",
       "52       type material of Mycobacterium rhizamassiliense   \n",
       "53       type material of Mycobacterium rhizamassiliense   \n",
       "54       type material of Mycobacterium rhizamassiliense   \n",
       "55       type material of Mycobacterium terramassiliense   \n",
       "56       type material of Mycobacterium terramassiliense   \n",
       "57       type material of Mycobacterium terramassiliense   \n",
       "58                type strain of Mycobacterium ahvazicum   \n",
       "59                type strain of Mycobacterium ahvazicum   \n",
       "60                type strain of Mycobacterium ahvazicum   \n",
       "61                type strain of Mycobacterium ahvazicum   \n",
       "79     type strain of Campylobacter fetus subsp. vene...   \n",
       "80     type strain of Campylobacter fetus subsp. vene...   \n",
       "81     type strain of Campylobacter fetus subsp. vene...   \n",
       "82     type strain of Campylobacter fetus subsp. vene...   \n",
       "83     type strain of Campylobacter fetus subsp. vene...   \n",
       "84     type strain of Campylobacter fetus subsp. vene...   \n",
       "...                                                  ...   \n",
       "50415                                                NaN   \n",
       "50416                                                NaN   \n",
       "50417                                                NaN   \n",
       "50418                                                NaN   \n",
       "50419                                                NaN   \n",
       "50420                                                NaN   \n",
       "50421                                                NaN   \n",
       "50422                                                NaN   \n",
       "50423                                                NaN   \n",
       "50424                                                NaN   \n",
       "50425                                                NaN   \n",
       "50426                                                NaN   \n",
       "50427                                                NaN   \n",
       "50428                                                NaN   \n",
       "50429                                                NaN   \n",
       "50430                                                NaN   \n",
       "50431                                                NaN   \n",
       "50432                                                NaN   \n",
       "50433                                                NaN   \n",
       "50434                                                NaN   \n",
       "50435                                                NaN   \n",
       "50436                                                NaN   \n",
       "50437                                                NaN   \n",
       "50438                                                NaN   \n",
       "50439                                                NaN   \n",
       "50440                                                NaN   \n",
       "50441                                                NaN   \n",
       "50442                                                NaN   \n",
       "50443                                                NaN   \n",
       "50444                                                NaN   \n",
       "\n",
       "                               binomial  NRaccession  \\\n",
       "9                Ureaplasma urealyticum          NaN   \n",
       "10               Ureaplasma urealyticum          NaN   \n",
       "11               Ureaplasma urealyticum          NaN   \n",
       "12               Ureaplasma urealyticum          NaN   \n",
       "28             Mesomycoplasma hyorhinis  NR_114563.1   \n",
       "29             Mesomycoplasma hyorhinis  NR_113686.1   \n",
       "30             Mesomycoplasma hyorhinis  NR_041845.1   \n",
       "31                   Mycoplasma hominis          NaN   \n",
       "32                   Mycoplasma hominis          NaN   \n",
       "33                   Mycoplasma hominis          NaN   \n",
       "38            Mycoplasmopsis fermentans  NR_113683.1   \n",
       "39            Mycoplasmopsis fermentans  NR_044666.2   \n",
       "50     Mycobacterium numidiamassiliense          NaN   \n",
       "51     Mycobacterium numidiamassiliense          NaN   \n",
       "52       Mycobacterium rhizamassiliense          NaN   \n",
       "53       Mycobacterium rhizamassiliense          NaN   \n",
       "54       Mycobacterium rhizamassiliense          NaN   \n",
       "55       Mycobacterium terramassiliense          NaN   \n",
       "56       Mycobacterium terramassiliense          NaN   \n",
       "57       Mycobacterium terramassiliense          NaN   \n",
       "58              Mycobacterium ahvazicum          NaN   \n",
       "59              Mycobacterium ahvazicum          NaN   \n",
       "60              Mycobacterium ahvazicum          NaN   \n",
       "61              Mycobacterium ahvazicum          NaN   \n",
       "79                  Campylobacter fetus  NR_118514.1   \n",
       "80                  Campylobacter fetus  NR_043597.1   \n",
       "81                  Campylobacter fetus  NR_118514.1   \n",
       "82                  Campylobacter fetus  NR_043597.1   \n",
       "83                  Campylobacter fetus  NR_118514.1   \n",
       "84                  Campylobacter fetus  NR_043597.1   \n",
       "...                                 ...          ...   \n",
       "50415                               NaN  NR_026025.1   \n",
       "50416                               NaN  NR_025989.1   \n",
       "50417                               NaN  NR_025979.1   \n",
       "50418                               NaN  NR_025971.1   \n",
       "50419                               NaN  NR_025959.1   \n",
       "50420                               NaN  NR_025855.1   \n",
       "50421                               NaN  NR_025768.1   \n",
       "50422                               NaN  NR_025681.1   \n",
       "50423                               NaN  NR_025680.1   \n",
       "50424                               NaN  NR_025670.1   \n",
       "50425                               NaN  NR_025655.1   \n",
       "50426                               NaN  NR_025646.1   \n",
       "50427                               NaN  NR_042943.1   \n",
       "50428                               NaN  NR_037100.1   \n",
       "50429                               NaN  NR_037084.1   \n",
       "50430                               NaN  NR_037019.1   \n",
       "50431                               NaN  NR_036961.1   \n",
       "50432                               NaN  NR_102880.1   \n",
       "50433                               NaN  NR_036983.1   \n",
       "50434                               NaN  NR_036972.1   \n",
       "50435                               NaN  NR_036912.1   \n",
       "50436                               NaN  NR_036884.1   \n",
       "50437                               NaN  NR_036809.1   \n",
       "50438                               NaN  NR_036807.1   \n",
       "50439                               NaN  NR_036806.1   \n",
       "50440                               NaN  NR_036804.1   \n",
       "50441                               NaN  NG_041947.1   \n",
       "50442                               NaN  NR_026347.1   \n",
       "50443                               NaN  NR_026295.1   \n",
       "50444                               NaN  NR_147370.1   \n",
       "\n",
       "                                              organism_y  \n",
       "9                                                    NaN  \n",
       "10                                                   NaN  \n",
       "11                                                   NaN  \n",
       "12                                                   NaN  \n",
       "28                              Mesomycoplasma hyorhinis  \n",
       "29                              Mesomycoplasma hyorhinis  \n",
       "30                              Mesomycoplasma hyorhinis  \n",
       "31                                                   NaN  \n",
       "32                                                   NaN  \n",
       "33                                                   NaN  \n",
       "38                             Mycoplasmopsis fermentans  \n",
       "39                             Mycoplasmopsis fermentans  \n",
       "50                                                   NaN  \n",
       "51                                                   NaN  \n",
       "52                                                   NaN  \n",
       "53                                                   NaN  \n",
       "54                                                   NaN  \n",
       "55                                                   NaN  \n",
       "56                                                   NaN  \n",
       "57                                                   NaN  \n",
       "58                                                   NaN  \n",
       "59                                                   NaN  \n",
       "60                                                   NaN  \n",
       "61                                                   NaN  \n",
       "79                                   Campylobacter fetus  \n",
       "80                                   Campylobacter fetus  \n",
       "81                                   Campylobacter fetus  \n",
       "82                                   Campylobacter fetus  \n",
       "83                                   Campylobacter fetus  \n",
       "84                                   Campylobacter fetus  \n",
       "...                                                  ...  \n",
       "50415    Riemerella anatipestifer ATCC 11845 = DSM 15868  \n",
       "50416                       Mesomycoplasma ovipneumoniae  \n",
       "50417                    Desulfofundulus thermocisternus  \n",
       "50418                        Mycoplasma putrefaciens KS1  \n",
       "50419               Polaribacter franzmannii ATCC 700399  \n",
       "50420                                    Afifella marina  \n",
       "50421                      Nocardiopsis salina YIM 90010  \n",
       "50422                              Aeromicrobium marinum  \n",
       "50423                        Dialister invisus DSM 15470  \n",
       "50424         Pseudoflavonifractor capillosus ATCC 29799  \n",
       "50425              Pseudoalteromonas translucida KMM 520  \n",
       "50426                          Afipia massiliensis 34633  \n",
       "50427                           Sphingobium indicum B90A  \n",
       "50428                       Anoxybacillus pushchinoensis  \n",
       "50429      Klebsiella pneumoniae subsp. rhinoscleromatis  \n",
       "50430           Photobacterium damselae subsp. piscicida  \n",
       "50431                            Bartonella clarridgeiae  \n",
       "50432                        Acetoanaerobium sticklandii  \n",
       "50433                                 Thermus brockianus  \n",
       "50434  Propionibacterium freudenreichii subsp. shermanii  \n",
       "50435         Selenomonas ruminantium subsp. lactilytica  \n",
       "50436          Nonomuraea roseoviolacea subsp. carminata  \n",
       "50437              Listeria ivanovii subsp. londoniensis  \n",
       "50438                       Borreliella valaisiana VS116  \n",
       "50439                             Borreliella lusitaniae  \n",
       "50440                             Legionella rowbothamii  \n",
       "50441               Ruminiclostridium cellulolyticum H10  \n",
       "50442                               Clostridium isatidis  \n",
       "50443             Couchioplanes caeruleus subsp. azureus  \n",
       "50444                   Pseudoflavonifractor phocaeensis  \n",
       "\n",
       "[16468 rows x 6 columns]"
      ]
     },
     "execution_count": 77,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "nomatch_df = combine_df.loc[(combine_df['organism_x']) != (combine_df['organism_y'])]\n",
    "nomatch_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 78,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "\n",
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       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>X58561.1</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>AY741673.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>AF073450.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>AF059330.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>X58559.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>32</th>\n",
       "      <td>M24473.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>33</th>\n",
       "      <td>JN935871.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50</th>\n",
       "      <td>FUEZ00000000.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>51</th>\n",
       "      <td>FUEZ01000004.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>52</th>\n",
       "      <td>FUFA00000000.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>53</th>\n",
       "      <td>FUFA01000004.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>LT721901.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>55</th>\n",
       "      <td>FTRV00000000.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>56</th>\n",
       "      <td>FTRV01000016.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>57</th>\n",
       "      <td>LT717701.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>58</th>\n",
       "      <td>FXEG00000000.2</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>59</th>\n",
       "      <td>FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>60</th>\n",
       "      <td>NZ_FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>61</th>\n",
       "      <td>NZ_FXEG02000002.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>104</th>\n",
       "      <td>M96403.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>105</th>\n",
       "      <td>AF287297.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>106</th>\n",
       "      <td>AJ298728.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>163</th>\n",
       "      <td>X52909.1</td>\n",
       "      <td>Hirschia baltica ATCC 49814</td>\n",
       "      <td>type strain of Hirschia baltica</td>\n",
       "      <td>Hirschia baltica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>164</th>\n",
       "      <td>AJ421782.1</td>\n",
       "      <td>Hirschia baltica ATCC 49814</td>\n",
       "      <td>type strain of Hirschia baltica</td>\n",
       "      <td>Hirschia baltica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>AH001799.2</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>HQ823668.1</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>L40993.1</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>243</th>\n",
       "      <td>X92357.1</td>\n",
       "      <td>Geodermatophilus obscurus subsp. utahensis</td>\n",
       "      <td>type strain of Geodermatophilus obscurus subsp...</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>244</th>\n",
       "      <td>X92356.1</td>\n",
       "      <td>Geodermatophilus obscurus DSM 43160</td>\n",
       "      <td>type strain of Geodermatophilus obscurus</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>245</th>\n",
       "      <td>JQ899243.1</td>\n",
       "      <td>Geodermatophilus obscurus DSM 43160</td>\n",
       "      <td>type strain of Geodermatophilus obscurus</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50415</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026025.1</td>\n",
       "      <td>Riemerella anatipestifer ATCC 11845 = DSM 15868</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50416</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025989.1</td>\n",
       "      <td>Mesomycoplasma ovipneumoniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50417</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025979.1</td>\n",
       "      <td>Desulfofundulus thermocisternus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50418</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025971.1</td>\n",
       "      <td>Mycoplasma putrefaciens KS1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50419</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025959.1</td>\n",
       "      <td>Polaribacter franzmannii ATCC 700399</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50420</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025855.1</td>\n",
       "      <td>Afifella marina</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50421</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025768.1</td>\n",
       "      <td>Nocardiopsis salina YIM 90010</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50422</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025681.1</td>\n",
       "      <td>Aeromicrobium marinum</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50423</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025680.1</td>\n",
       "      <td>Dialister invisus DSM 15470</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50424</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025670.1</td>\n",
       "      <td>Pseudoflavonifractor capillosus ATCC 29799</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50425</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025655.1</td>\n",
       "      <td>Pseudoalteromonas translucida KMM 520</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50426</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_025646.1</td>\n",
       "      <td>Afipia massiliensis 34633</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50427</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_042943.1</td>\n",
       "      <td>Sphingobium indicum B90A</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50428</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037100.1</td>\n",
       "      <td>Anoxybacillus pushchinoensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50429</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037084.1</td>\n",
       "      <td>Klebsiella pneumoniae subsp. rhinoscleromatis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50430</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_037019.1</td>\n",
       "      <td>Photobacterium damselae subsp. piscicida</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50431</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036961.1</td>\n",
       "      <td>Bartonella clarridgeiae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50432</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_102880.1</td>\n",
       "      <td>Acetoanaerobium sticklandii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50433</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036983.1</td>\n",
       "      <td>Thermus brockianus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50434</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036972.1</td>\n",
       "      <td>Propionibacterium freudenreichii subsp. shermanii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50435</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036912.1</td>\n",
       "      <td>Selenomonas ruminantium subsp. lactilytica</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50436</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036884.1</td>\n",
       "      <td>Nonomuraea roseoviolacea subsp. carminata</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50437</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036809.1</td>\n",
       "      <td>Listeria ivanovii subsp. londoniensis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50438</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036807.1</td>\n",
       "      <td>Borreliella valaisiana VS116</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50439</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036806.1</td>\n",
       "      <td>Borreliella lusitaniae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50440</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_036804.1</td>\n",
       "      <td>Legionella rowbothamii</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50441</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NG_041947.1</td>\n",
       "      <td>Ruminiclostridium cellulolyticum H10</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50442</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026347.1</td>\n",
       "      <td>Clostridium isatidis</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50443</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_026295.1</td>\n",
       "      <td>Couchioplanes caeruleus subsp. azureus</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50444</th>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NR_147370.1</td>\n",
       "      <td>Pseudoflavonifractor phocaeensis</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>11208 rows × 6 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "               accession                                        organism_x  \\\n",
       "9               X58561.1                            Ureaplasma urealyticum   \n",
       "10            AY741673.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "11            AF073450.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "12            AF059330.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "31              X58559.1                     Mycoplasma hominis ATCC 23114   \n",
       "32              M24473.1                     Mycoplasma hominis ATCC 23114   \n",
       "33            JN935871.1                     Mycoplasma hominis ATCC 23114   \n",
       "50        FUEZ00000000.1                  Mycobacterium numidiamassiliense   \n",
       "51        FUEZ01000004.1                  Mycobacterium numidiamassiliense   \n",
       "52        FUFA00000000.1                    Mycobacterium rhizamassiliense   \n",
       "53        FUFA01000004.1                    Mycobacterium rhizamassiliense   \n",
       "54            LT721901.1                    Mycobacterium rhizamassiliense   \n",
       "55        FTRV00000000.1                    Mycobacterium terramassiliense   \n",
       "56        FTRV01000016.1                    Mycobacterium terramassiliense   \n",
       "57            LT717701.1                    Mycobacterium terramassiliense   \n",
       "58        FXEG00000000.2                           Mycobacterium ahvazicum   \n",
       "59        FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "60     NZ_FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "61     NZ_FXEG02000002.1                           Mycobacterium ahvazicum   \n",
       "104             M96403.1                              Nitrosomonas mobilis   \n",
       "105           AF287297.1                              Nitrosomonas mobilis   \n",
       "106           AJ298728.1                              Nitrosomonas mobilis   \n",
       "163             X52909.1                       Hirschia baltica ATCC 49814   \n",
       "164           AJ421782.1                       Hirschia baltica ATCC 49814   \n",
       "219           AH001799.2                          Thiothrix nivea DSM 5205   \n",
       "220           HQ823668.1                          Thiothrix nivea DSM 5205   \n",
       "221             L40993.1                          Thiothrix nivea DSM 5205   \n",
       "243             X92357.1        Geodermatophilus obscurus subsp. utahensis   \n",
       "244             X92356.1               Geodermatophilus obscurus DSM 43160   \n",
       "245           JQ899243.1               Geodermatophilus obscurus DSM 43160   \n",
       "...                  ...                                               ...   \n",
       "50415                NaN                                               NaN   \n",
       "50416                NaN                                               NaN   \n",
       "50417                NaN                                               NaN   \n",
       "50418                NaN                                               NaN   \n",
       "50419                NaN                                               NaN   \n",
       "50420                NaN                                               NaN   \n",
       "50421                NaN                                               NaN   \n",
       "50422                NaN                                               NaN   \n",
       "50423                NaN                                               NaN   \n",
       "50424                NaN                                               NaN   \n",
       "50425                NaN                                               NaN   \n",
       "50426                NaN                                               NaN   \n",
       "50427                NaN                                               NaN   \n",
       "50428                NaN                                               NaN   \n",
       "50429                NaN                                               NaN   \n",
       "50430                NaN                                               NaN   \n",
       "50431                NaN                                               NaN   \n",
       "50432                NaN                                               NaN   \n",
       "50433                NaN                                               NaN   \n",
       "50434                NaN                                               NaN   \n",
       "50435                NaN                                               NaN   \n",
       "50436                NaN                                               NaN   \n",
       "50437                NaN                                               NaN   \n",
       "50438                NaN                                               NaN   \n",
       "50439                NaN                                               NaN   \n",
       "50440                NaN                                               NaN   \n",
       "50441                NaN                                               NaN   \n",
       "50442                NaN                                               NaN   \n",
       "50443                NaN                                               NaN   \n",
       "50444                NaN                                               NaN   \n",
       "\n",
       "                                                  type_x  \\\n",
       "9                  type strain of Ureaplasma urealyticum   \n",
       "10                 type strain of Ureaplasma urealyticum   \n",
       "11                 type strain of Ureaplasma urealyticum   \n",
       "12                 type strain of Ureaplasma urealyticum   \n",
       "31                     type strain of Mycoplasma hominis   \n",
       "32                     type strain of Mycoplasma hominis   \n",
       "33                     type strain of Mycoplasma hominis   \n",
       "50     type material of Mycobacterium numidiamassiliense   \n",
       "51     type material of Mycobacterium numidiamassiliense   \n",
       "52       type material of Mycobacterium rhizamassiliense   \n",
       "53       type material of Mycobacterium rhizamassiliense   \n",
       "54       type material of Mycobacterium rhizamassiliense   \n",
       "55       type material of Mycobacterium terramassiliense   \n",
       "56       type material of Mycobacterium terramassiliense   \n",
       "57       type material of Mycobacterium terramassiliense   \n",
       "58                type strain of Mycobacterium ahvazicum   \n",
       "59                type strain of Mycobacterium ahvazicum   \n",
       "60                type strain of Mycobacterium ahvazicum   \n",
       "61                type strain of Mycobacterium ahvazicum   \n",
       "104                  type strain of Nitrosomonas mobilis   \n",
       "105                  type strain of Nitrosomonas mobilis   \n",
       "106                  type strain of Nitrosomonas mobilis   \n",
       "163                      type strain of Hirschia baltica   \n",
       "164                      type strain of Hirschia baltica   \n",
       "219                       type strain of Thiothrix nivea   \n",
       "220                       type strain of Thiothrix nivea   \n",
       "221                       type strain of Thiothrix nivea   \n",
       "243    type strain of Geodermatophilus obscurus subsp...   \n",
       "244             type strain of Geodermatophilus obscurus   \n",
       "245             type strain of Geodermatophilus obscurus   \n",
       "...                                                  ...   \n",
       "50415                                                NaN   \n",
       "50416                                                NaN   \n",
       "50417                                                NaN   \n",
       "50418                                                NaN   \n",
       "50419                                                NaN   \n",
       "50420                                                NaN   \n",
       "50421                                                NaN   \n",
       "50422                                                NaN   \n",
       "50423                                                NaN   \n",
       "50424                                                NaN   \n",
       "50425                                                NaN   \n",
       "50426                                                NaN   \n",
       "50427                                                NaN   \n",
       "50428                                                NaN   \n",
       "50429                                                NaN   \n",
       "50430                                                NaN   \n",
       "50431                                                NaN   \n",
       "50432                                                NaN   \n",
       "50433                                                NaN   \n",
       "50434                                                NaN   \n",
       "50435                                                NaN   \n",
       "50436                                                NaN   \n",
       "50437                                                NaN   \n",
       "50438                                                NaN   \n",
       "50439                                                NaN   \n",
       "50440                                                NaN   \n",
       "50441                                                NaN   \n",
       "50442                                                NaN   \n",
       "50443                                                NaN   \n",
       "50444                                                NaN   \n",
       "\n",
       "                               binomial  NRaccession  \\\n",
       "9                Ureaplasma urealyticum          NaN   \n",
       "10               Ureaplasma urealyticum          NaN   \n",
       "11               Ureaplasma urealyticum          NaN   \n",
       "12               Ureaplasma urealyticum          NaN   \n",
       "31                   Mycoplasma hominis          NaN   \n",
       "32                   Mycoplasma hominis          NaN   \n",
       "33                   Mycoplasma hominis          NaN   \n",
       "50     Mycobacterium numidiamassiliense          NaN   \n",
       "51     Mycobacterium numidiamassiliense          NaN   \n",
       "52       Mycobacterium rhizamassiliense          NaN   \n",
       "53       Mycobacterium rhizamassiliense          NaN   \n",
       "54       Mycobacterium rhizamassiliense          NaN   \n",
       "55       Mycobacterium terramassiliense          NaN   \n",
       "56       Mycobacterium terramassiliense          NaN   \n",
       "57       Mycobacterium terramassiliense          NaN   \n",
       "58              Mycobacterium ahvazicum          NaN   \n",
       "59              Mycobacterium ahvazicum          NaN   \n",
       "60              Mycobacterium ahvazicum          NaN   \n",
       "61              Mycobacterium ahvazicum          NaN   \n",
       "104                Nitrosomonas mobilis          NaN   \n",
       "105                Nitrosomonas mobilis          NaN   \n",
       "106                Nitrosomonas mobilis          NaN   \n",
       "163                    Hirschia baltica          NaN   \n",
       "164                    Hirschia baltica          NaN   \n",
       "219                     Thiothrix nivea          NaN   \n",
       "220                     Thiothrix nivea          NaN   \n",
       "221                     Thiothrix nivea          NaN   \n",
       "243           Geodermatophilus obscurus          NaN   \n",
       "244           Geodermatophilus obscurus          NaN   \n",
       "245           Geodermatophilus obscurus          NaN   \n",
       "...                                 ...          ...   \n",
       "50415                               NaN  NR_026025.1   \n",
       "50416                               NaN  NR_025989.1   \n",
       "50417                               NaN  NR_025979.1   \n",
       "50418                               NaN  NR_025971.1   \n",
       "50419                               NaN  NR_025959.1   \n",
       "50420                               NaN  NR_025855.1   \n",
       "50421                               NaN  NR_025768.1   \n",
       "50422                               NaN  NR_025681.1   \n",
       "50423                               NaN  NR_025680.1   \n",
       "50424                               NaN  NR_025670.1   \n",
       "50425                               NaN  NR_025655.1   \n",
       "50426                               NaN  NR_025646.1   \n",
       "50427                               NaN  NR_042943.1   \n",
       "50428                               NaN  NR_037100.1   \n",
       "50429                               NaN  NR_037084.1   \n",
       "50430                               NaN  NR_037019.1   \n",
       "50431                               NaN  NR_036961.1   \n",
       "50432                               NaN  NR_102880.1   \n",
       "50433                               NaN  NR_036983.1   \n",
       "50434                               NaN  NR_036972.1   \n",
       "50435                               NaN  NR_036912.1   \n",
       "50436                               NaN  NR_036884.1   \n",
       "50437                               NaN  NR_036809.1   \n",
       "50438                               NaN  NR_036807.1   \n",
       "50439                               NaN  NR_036806.1   \n",
       "50440                               NaN  NR_036804.1   \n",
       "50441                               NaN  NG_041947.1   \n",
       "50442                               NaN  NR_026347.1   \n",
       "50443                               NaN  NR_026295.1   \n",
       "50444                               NaN  NR_147370.1   \n",
       "\n",
       "                                              organism_y  \n",
       "9                                                    NaN  \n",
       "10                                                   NaN  \n",
       "11                                                   NaN  \n",
       "12                                                   NaN  \n",
       "31                                                   NaN  \n",
       "32                                                   NaN  \n",
       "33                                                   NaN  \n",
       "50                                                   NaN  \n",
       "51                                                   NaN  \n",
       "52                                                   NaN  \n",
       "53                                                   NaN  \n",
       "54                                                   NaN  \n",
       "55                                                   NaN  \n",
       "56                                                   NaN  \n",
       "57                                                   NaN  \n",
       "58                                                   NaN  \n",
       "59                                                   NaN  \n",
       "60                                                   NaN  \n",
       "61                                                   NaN  \n",
       "104                                                  NaN  \n",
       "105                                                  NaN  \n",
       "106                                                  NaN  \n",
       "163                                                  NaN  \n",
       "164                                                  NaN  \n",
       "219                                                  NaN  \n",
       "220                                                  NaN  \n",
       "221                                                  NaN  \n",
       "243                                                  NaN  \n",
       "244                                                  NaN  \n",
       "245                                                  NaN  \n",
       "...                                                  ...  \n",
       "50415    Riemerella anatipestifer ATCC 11845 = DSM 15868  \n",
       "50416                       Mesomycoplasma ovipneumoniae  \n",
       "50417                    Desulfofundulus thermocisternus  \n",
       "50418                        Mycoplasma putrefaciens KS1  \n",
       "50419               Polaribacter franzmannii ATCC 700399  \n",
       "50420                                    Afifella marina  \n",
       "50421                      Nocardiopsis salina YIM 90010  \n",
       "50422                              Aeromicrobium marinum  \n",
       "50423                        Dialister invisus DSM 15470  \n",
       "50424         Pseudoflavonifractor capillosus ATCC 29799  \n",
       "50425              Pseudoalteromonas translucida KMM 520  \n",
       "50426                          Afipia massiliensis 34633  \n",
       "50427                           Sphingobium indicum B90A  \n",
       "50428                       Anoxybacillus pushchinoensis  \n",
       "50429      Klebsiella pneumoniae subsp. rhinoscleromatis  \n",
       "50430           Photobacterium damselae subsp. piscicida  \n",
       "50431                            Bartonella clarridgeiae  \n",
       "50432                        Acetoanaerobium sticklandii  \n",
       "50433                                 Thermus brockianus  \n",
       "50434  Propionibacterium freudenreichii subsp. shermanii  \n",
       "50435         Selenomonas ruminantium subsp. lactilytica  \n",
       "50436          Nonomuraea roseoviolacea subsp. carminata  \n",
       "50437              Listeria ivanovii subsp. londoniensis  \n",
       "50438                       Borreliella valaisiana VS116  \n",
       "50439                             Borreliella lusitaniae  \n",
       "50440                             Legionella rowbothamii  \n",
       "50441               Ruminiclostridium cellulolyticum H10  \n",
       "50442                               Clostridium isatidis  \n",
       "50443             Couchioplanes caeruleus subsp. azureus  \n",
       "50444                   Pseudoflavonifractor phocaeensis  \n",
       "\n",
       "[11208 rows x 6 columns]"
      ]
     },
     "execution_count": 78,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "binomatch_df = combine_df.loc[(combine_df['binomial']) != (combine_df['organism_y'])]\n",
    "binomatch_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "rightlength = data_table_df.loc[(data_table_df['protein_length'] > min_len) & (data_table_df['protein_length'] < max_len)]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### dict sort doesn't work quite right"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 41,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>U07934.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_025953.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>X58561.1</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>X58558.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_113661.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>X58555.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>X58559.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NR_041881.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>X58553.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_044666.2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>X58560.1</td>\n",
       "      <td>Mycoplasmopsis arginini</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Mycoplasmopsis arginini</td>\n",
       "      <td>NR_041743.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>X58557.1</td>\n",
       "      <td>Metamycoplasma arthritidis</td>\n",
       "      <td>type strain of Mycoplasma arthritidis</td>\n",
       "      <td>Metamycoplasma arthritidis</td>\n",
       "      <td>NR_044673.2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>FUEZ00000000.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>FUEZ01000004.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>FUFA00000000.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>FUFA01000004.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>FTRV00000000.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>FTRV01000016.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>FXEG00000000.2</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>LT721901.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>LT717701.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>FN185731.1</td>\n",
       "      <td>Levilactobacillus paucivorans</td>\n",
       "      <td>type strain of Lactobacillus paucivorans</td>\n",
       "      <td>Levilactobacillus paucivorans</td>\n",
       "      <td>NR_116943.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>Z14111.1</td>\n",
       "      <td>Pseudonocardia halophobica</td>\n",
       "      <td>type strain of Pseudonocardia halophobica</td>\n",
       "      <td>Pseudonocardia halophobica</td>\n",
       "      <td>NR_042004.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>M65011.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_043598.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>AH001692.2</td>\n",
       "      <td>Fluoribacter dumoffii NY 23</td>\n",
       "      <td>type strain of Fluoribacter dumoffii</td>\n",
       "      <td>Fluoribacter dumoffii</td>\n",
       "      <td>NR_119025.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>AH001691.2</td>\n",
       "      <td>Legionella bozemanae</td>\n",
       "      <td>type strain of Fluoribacter bozemanae</td>\n",
       "      <td>Legionella bozemanae</td>\n",
       "      <td>NR_125584.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>AH001694.2</td>\n",
       "      <td>Fluoribacter gormanii</td>\n",
       "      <td>type strain of Fluoribacter gormanii</td>\n",
       "      <td>Fluoribacter gormanii</td>\n",
       "      <td>NR_026521.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>M36030.1</td>\n",
       "      <td>Legionella spiritensis</td>\n",
       "      <td>type strain of Legionella spiritensis</td>\n",
       "      <td>Legionella spiritensis</td>\n",
       "      <td>NR_117699.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>M96403.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>D12663.1</td>\n",
       "      <td>Cytophaga hutchinsonii ATCC 33406</td>\n",
       "      <td>type strain of Cytophaga hutchinsonii</td>\n",
       "      <td>Cytophaga hutchinsonii</td>\n",
       "      <td>NR_102866.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>D12658.1</td>\n",
       "      <td>Cytophaga aurantiaca</td>\n",
       "      <td>type strain of Cytophaga aurantiaca</td>\n",
       "      <td>Cytophaga aurantiaca</td>\n",
       "      <td>NR_025829.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>D12657.1</td>\n",
       "      <td>Chitinophaga arvensicola</td>\n",
       "      <td>type strain of Chitinophaga arvensicola</td>\n",
       "      <td>Chitinophaga arvensicola</td>\n",
       "      <td>NR_042512.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>D30774.1</td>\n",
       "      <td>Acidocella facilis</td>\n",
       "      <td>type strain of Acidocella facilis</td>\n",
       "      <td>Acidocella facilis</td>\n",
       "      <td>NR_025852.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28828</th>\n",
       "      <td>AOIS01000070.1</td>\n",
       "      <td>Haloterrigena salina JCM 13891</td>\n",
       "      <td>type strain of Haloterrigena salina</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28829</th>\n",
       "      <td>AOIP01000005.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28830</th>\n",
       "      <td>AOIP01000006.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28831</th>\n",
       "      <td>AOIQ01000016.1</td>\n",
       "      <td>Halovivax asiaticus JCM 14624</td>\n",
       "      <td>type strain of Halovivax asiaticus</td>\n",
       "      <td>Halovivax asiaticus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28832</th>\n",
       "      <td>AOIN01000039.1</td>\n",
       "      <td>Natrialba chahannaoensis JCM 10990</td>\n",
       "      <td>type strain of Natrialba chahannaoensis</td>\n",
       "      <td>Natrialba chahannaoensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28833</th>\n",
       "      <td>AOIO01000040.1</td>\n",
       "      <td>Natrialba asiatica DSM 12278</td>\n",
       "      <td>type strain of Natrialba asiatica</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28834</th>\n",
       "      <td>AOIM01000020.1</td>\n",
       "      <td>Natrialba hulunbeirensis JCM 10989</td>\n",
       "      <td>type strain of Natrialba hulunbeirensis</td>\n",
       "      <td>Natrialba hulunbeirensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28835</th>\n",
       "      <td>AOIL01000067.1</td>\n",
       "      <td>Natrialba taiwanensis DSM 12281</td>\n",
       "      <td>type strain of Natrialba taiwanensis</td>\n",
       "      <td>Natrialba taiwanensis</td>\n",
       "      <td>NR_113523.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28836</th>\n",
       "      <td>AOIK01000039.1</td>\n",
       "      <td>Natrinema altunense JCM 12890</td>\n",
       "      <td>type strain of Natrinema altunense</td>\n",
       "      <td>Natrinema altunense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28837</th>\n",
       "      <td>AOIJ01000051.1</td>\n",
       "      <td>Natrinema gari JCM 14663</td>\n",
       "      <td>type strain of Natrinema gari</td>\n",
       "      <td>Natrinema gari</td>\n",
       "      <td>NR_028167.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28838</th>\n",
       "      <td>AOII01000104.1</td>\n",
       "      <td>Natrinema pallidum DSM 3751</td>\n",
       "      <td>type strain of Natrinema pallidum</td>\n",
       "      <td>Natrinema pallidum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28839</th>\n",
       "      <td>AOII01000106.1</td>\n",
       "      <td>Natrinema pallidum DSM 3751</td>\n",
       "      <td>type strain of Natrinema pallidum</td>\n",
       "      <td>Natrinema pallidum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28840</th>\n",
       "      <td>AOIE01000102.1</td>\n",
       "      <td>Natrinema pellirubrum DSM 15624</td>\n",
       "      <td>type strain of Natrinema pellirubrum</td>\n",
       "      <td>Natrinema pellirubrum</td>\n",
       "      <td>NR_041943.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28841</th>\n",
       "      <td>AOIC01000047.1</td>\n",
       "      <td>Natronobacterium gregoryi SP2</td>\n",
       "      <td>type strain of Natronobacterium gregoryi</td>\n",
       "      <td>Natronobacterium gregoryi</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28842</th>\n",
       "      <td>AOID01000040.1</td>\n",
       "      <td>Natrinema versiforme JCM 10478</td>\n",
       "      <td>type strain of Natrinema versiforme</td>\n",
       "      <td>Natrinema versiforme</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28843</th>\n",
       "      <td>AOIA01000029.1</td>\n",
       "      <td>Natronococcus jeotgali DSM 18795</td>\n",
       "      <td>type strain of Natronococcus jeotgali</td>\n",
       "      <td>Natronococcus jeotgali</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28844</th>\n",
       "      <td>AOHZ01000042.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus JCM 12255</td>\n",
       "      <td>type strain of Natronolimnobius innermongolicus</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28845</th>\n",
       "      <td>AOHY01000010.1</td>\n",
       "      <td>Natronorubrum bangense JCM 10635</td>\n",
       "      <td>type strain of Natronorubrum bangense</td>\n",
       "      <td>Natronorubrum bangense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28846</th>\n",
       "      <td>AOHW01000002.1</td>\n",
       "      <td>Natronorubrum tibetense GA33</td>\n",
       "      <td>type strain of Natronorubrum tibetense</td>\n",
       "      <td>Natronorubrum tibetense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28847</th>\n",
       "      <td>AOHX01000046.1</td>\n",
       "      <td>Natronorubrum sulfidifaciens JCM 14089</td>\n",
       "      <td>type strain of Natronorubrum sulfidifaciens</td>\n",
       "      <td>Natronorubrum sulfidifaciens</td>\n",
       "      <td>NR_029142.2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28848</th>\n",
       "      <td>AOHV01000046.1</td>\n",
       "      <td>Halalkalicoccus jeotgali B3</td>\n",
       "      <td>type strain of Halalkalicoccus jeotgali</td>\n",
       "      <td>Halalkalicoccus jeotgali</td>\n",
       "      <td>NR_102920.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28849</th>\n",
       "      <td>AOHT01000014.1</td>\n",
       "      <td>Halogeometricum borinquense DSM 11551</td>\n",
       "      <td>type strain of Halogeometricum borinquense</td>\n",
       "      <td>Halogeometricum borinquense</td>\n",
       "      <td>NR_102892.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28850</th>\n",
       "      <td>AOHS01000039.1</td>\n",
       "      <td>Natrialba magadii ATCC 43099</td>\n",
       "      <td>type strain of Natrialba magadii</td>\n",
       "      <td>Natrialba magadii</td>\n",
       "      <td>NR_028243.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28851</th>\n",
       "      <td>AOHU01000104.1</td>\n",
       "      <td>Haloferax volcanii DS2</td>\n",
       "      <td>type strain of Haloferax volcanii</td>\n",
       "      <td>Haloferax volcanii</td>\n",
       "      <td>NR_028203.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28852</th>\n",
       "      <td>AB301068.1</td>\n",
       "      <td>Halococcus hamelinensis 100A6</td>\n",
       "      <td>type strain of Halococcus hamelinensis</td>\n",
       "      <td>Halococcus hamelinensis</td>\n",
       "      <td>NR_028168.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28853</th>\n",
       "      <td>AEMG01000017.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NR_112874.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28854</th>\n",
       "      <td>AEMG01000020.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NR_112874.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28855</th>\n",
       "      <td>AEMG01000022.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NR_112874.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28856</th>\n",
       "      <td>AF095264.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>type strain of Methanobacterium thermaggregans</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>NR_104880.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28857</th>\n",
       "      <td>AF095263.1</td>\n",
       "      <td>Methanobacterium palustre</td>\n",
       "      <td>type strain of Methanobacterium palustre</td>\n",
       "      <td>Methanobacterium palustre</td>\n",
       "      <td>NR_041713.1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>28857 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "            accession                                          organism  \\\n",
       "1            U07934.1                              Mesorhizobium ciceri   \n",
       "2            X58561.1                            Ureaplasma urealyticum   \n",
       "3            X58558.1                         Metamycoplasma salivarium   \n",
       "4            X58555.1                          Mesomycoplasma hyorhinis   \n",
       "5            X58559.1                     Mycoplasma hominis ATCC 23114   \n",
       "6            X58553.1                         Mycoplasmopsis fermentans   \n",
       "7            X58560.1                           Mycoplasmopsis arginini   \n",
       "8            X58557.1                        Metamycoplasma arthritidis   \n",
       "9      FUEZ00000000.1                  Mycobacterium numidiamassiliense   \n",
       "10     FUEZ01000004.1                  Mycobacterium numidiamassiliense   \n",
       "11     FUFA00000000.1                    Mycobacterium rhizamassiliense   \n",
       "12     FUFA01000004.1                    Mycobacterium rhizamassiliense   \n",
       "13     FTRV00000000.1                    Mycobacterium terramassiliense   \n",
       "14     FTRV01000016.1                    Mycobacterium terramassiliense   \n",
       "15     FXEG00000000.2                           Mycobacterium ahvazicum   \n",
       "16     FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "17         LT721901.1                    Mycobacterium rhizamassiliense   \n",
       "18         LT717701.1                    Mycobacterium terramassiliense   \n",
       "19         FN185731.1                     Levilactobacillus paucivorans   \n",
       "20           Z14111.1                        Pseudonocardia halophobica   \n",
       "21           M65011.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "22         AH001692.2                       Fluoribacter dumoffii NY 23   \n",
       "23         AH001691.2                              Legionella bozemanae   \n",
       "24         AH001694.2                             Fluoribacter gormanii   \n",
       "25           M36030.1                            Legionella spiritensis   \n",
       "26           M96403.1                              Nitrosomonas mobilis   \n",
       "27           D12663.1                 Cytophaga hutchinsonii ATCC 33406   \n",
       "28           D12658.1                              Cytophaga aurantiaca   \n",
       "29           D12657.1                          Chitinophaga arvensicola   \n",
       "30           D30774.1                                Acidocella facilis   \n",
       "...               ...                                               ...   \n",
       "28828  AOIS01000070.1                    Haloterrigena salina JCM 13891   \n",
       "28829  AOIP01000005.1                      Natrialba aegyptia DSM 13077   \n",
       "28830  AOIP01000006.1                      Natrialba aegyptia DSM 13077   \n",
       "28831  AOIQ01000016.1                     Halovivax asiaticus JCM 14624   \n",
       "28832  AOIN01000039.1                Natrialba chahannaoensis JCM 10990   \n",
       "28833  AOIO01000040.1                      Natrialba asiatica DSM 12278   \n",
       "28834  AOIM01000020.1                Natrialba hulunbeirensis JCM 10989   \n",
       "28835  AOIL01000067.1                   Natrialba taiwanensis DSM 12281   \n",
       "28836  AOIK01000039.1                     Natrinema altunense JCM 12890   \n",
       "28837  AOIJ01000051.1                          Natrinema gari JCM 14663   \n",
       "28838  AOII01000104.1                       Natrinema pallidum DSM 3751   \n",
       "28839  AOII01000106.1                       Natrinema pallidum DSM 3751   \n",
       "28840  AOIE01000102.1                   Natrinema pellirubrum DSM 15624   \n",
       "28841  AOIC01000047.1                     Natronobacterium gregoryi SP2   \n",
       "28842  AOID01000040.1                    Natrinema versiforme JCM 10478   \n",
       "28843  AOIA01000029.1                  Natronococcus jeotgali DSM 18795   \n",
       "28844  AOHZ01000042.1    Natronolimnohabitans innermongolicus JCM 12255   \n",
       "28845  AOHY01000010.1                  Natronorubrum bangense JCM 10635   \n",
       "28846  AOHW01000002.1                      Natronorubrum tibetense GA33   \n",
       "28847  AOHX01000046.1            Natronorubrum sulfidifaciens JCM 14089   \n",
       "28848  AOHV01000046.1                       Halalkalicoccus jeotgali B3   \n",
       "28849  AOHT01000014.1             Halogeometricum borinquense DSM 11551   \n",
       "28850  AOHS01000039.1                      Natrialba magadii ATCC 43099   \n",
       "28851  AOHU01000104.1                            Haloferax volcanii DS2   \n",
       "28852      AB301068.1                     Halococcus hamelinensis 100A6   \n",
       "28853  AEMG01000017.1                Haladaptatus paucihalophilus DX253   \n",
       "28854  AEMG01000020.1                Haladaptatus paucihalophilus DX253   \n",
       "28855  AEMG01000022.1                Haladaptatus paucihalophilus DX253   \n",
       "28856      AF095264.1                   Methanobacterium thermaggregans   \n",
       "28857      AF095263.1                         Methanobacterium palustre   \n",
       "\n",
       "                                                    type  \\\n",
       "1                        type strain of Rhizobium ciceri   \n",
       "2                  type strain of Ureaplasma urealyticum   \n",
       "3                   type strain of Mycoplasma salivarium   \n",
       "4                    type strain of Mycoplasma hyorhinis   \n",
       "5                      type strain of Mycoplasma hominis   \n",
       "6                   type strain of Mycoplasma fermentans   \n",
       "7                                                    NaN   \n",
       "8                  type strain of Mycoplasma arthritidis   \n",
       "9      type material of Mycobacterium numidiamassiliense   \n",
       "10     type material of Mycobacterium numidiamassiliense   \n",
       "11       type material of Mycobacterium rhizamassiliense   \n",
       "12       type material of Mycobacterium rhizamassiliense   \n",
       "13       type material of Mycobacterium terramassiliense   \n",
       "14       type material of Mycobacterium terramassiliense   \n",
       "15                type strain of Mycobacterium ahvazicum   \n",
       "16                type strain of Mycobacterium ahvazicum   \n",
       "17       type material of Mycobacterium rhizamassiliense   \n",
       "18       type material of Mycobacterium terramassiliense   \n",
       "19              type strain of Lactobacillus paucivorans   \n",
       "20             type strain of Pseudonocardia halophobica   \n",
       "21     type strain of Campylobacter fetus subsp. vene...   \n",
       "22                  type strain of Fluoribacter dumoffii   \n",
       "23                 type strain of Fluoribacter bozemanae   \n",
       "24                  type strain of Fluoribacter gormanii   \n",
       "25                 type strain of Legionella spiritensis   \n",
       "26                   type strain of Nitrosomonas mobilis   \n",
       "27                 type strain of Cytophaga hutchinsonii   \n",
       "28                   type strain of Cytophaga aurantiaca   \n",
       "29               type strain of Chitinophaga arvensicola   \n",
       "30                     type strain of Acidocella facilis   \n",
       "...                                                  ...   \n",
       "28828                type strain of Haloterrigena salina   \n",
       "28829                  type strain of Natrialba aegyptia   \n",
       "28830                  type strain of Natrialba aegyptia   \n",
       "28831                 type strain of Halovivax asiaticus   \n",
       "28832            type strain of Natrialba chahannaoensis   \n",
       "28833                  type strain of Natrialba asiatica   \n",
       "28834            type strain of Natrialba hulunbeirensis   \n",
       "28835               type strain of Natrialba taiwanensis   \n",
       "28836                 type strain of Natrinema altunense   \n",
       "28837                      type strain of Natrinema gari   \n",
       "28838                  type strain of Natrinema pallidum   \n",
       "28839                  type strain of Natrinema pallidum   \n",
       "28840               type strain of Natrinema pellirubrum   \n",
       "28841           type strain of Natronobacterium gregoryi   \n",
       "28842                type strain of Natrinema versiforme   \n",
       "28843              type strain of Natronococcus jeotgali   \n",
       "28844    type strain of Natronolimnobius innermongolicus   \n",
       "28845              type strain of Natronorubrum bangense   \n",
       "28846             type strain of Natronorubrum tibetense   \n",
       "28847        type strain of Natronorubrum sulfidifaciens   \n",
       "28848            type strain of Halalkalicoccus jeotgali   \n",
       "28849         type strain of Halogeometricum borinquense   \n",
       "28850                   type strain of Natrialba magadii   \n",
       "28851                  type strain of Haloferax volcanii   \n",
       "28852             type strain of Halococcus hamelinensis   \n",
       "28853        type strain of Haladaptatus paucihalophilus   \n",
       "28854        type strain of Haladaptatus paucihalophilus   \n",
       "28855        type strain of Haladaptatus paucihalophilus   \n",
       "28856     type strain of Methanobacterium thermaggregans   \n",
       "28857           type strain of Methanobacterium palustre   \n",
       "\n",
       "                                   binomial  NRaccession  \n",
       "1                      Mesorhizobium ciceri  NR_025953.1  \n",
       "2                    Ureaplasma urealyticum          NaN  \n",
       "3                 Metamycoplasma salivarium  NR_113661.1  \n",
       "4                  Mesomycoplasma hyorhinis  NR_041845.1  \n",
       "5                        Mycoplasma hominis  NR_041881.1  \n",
       "6                 Mycoplasmopsis fermentans  NR_044666.2  \n",
       "7                   Mycoplasmopsis arginini  NR_041743.1  \n",
       "8                Metamycoplasma arthritidis  NR_044673.2  \n",
       "9          Mycobacterium numidiamassiliense          NaN  \n",
       "10         Mycobacterium numidiamassiliense          NaN  \n",
       "11           Mycobacterium rhizamassiliense          NaN  \n",
       "12           Mycobacterium rhizamassiliense          NaN  \n",
       "13           Mycobacterium terramassiliense          NaN  \n",
       "14           Mycobacterium terramassiliense          NaN  \n",
       "15                  Mycobacterium ahvazicum          NaN  \n",
       "16                  Mycobacterium ahvazicum          NaN  \n",
       "17           Mycobacterium rhizamassiliense          NaN  \n",
       "18           Mycobacterium terramassiliense          NaN  \n",
       "19            Levilactobacillus paucivorans  NR_116943.1  \n",
       "20               Pseudonocardia halophobica  NR_042004.1  \n",
       "21                      Campylobacter fetus  NR_043598.1  \n",
       "22                    Fluoribacter dumoffii  NR_119025.1  \n",
       "23                     Legionella bozemanae  NR_125584.1  \n",
       "24                    Fluoribacter gormanii  NR_026521.1  \n",
       "25                   Legionella spiritensis  NR_117699.1  \n",
       "26                     Nitrosomonas mobilis          NaN  \n",
       "27                   Cytophaga hutchinsonii  NR_102866.1  \n",
       "28                     Cytophaga aurantiaca  NR_025829.1  \n",
       "29                 Chitinophaga arvensicola  NR_042512.1  \n",
       "30                       Acidocella facilis  NR_025852.1  \n",
       "...                                     ...          ...  \n",
       "28828                  Haloterrigena salina          NaN  \n",
       "28829                    Natrialba aegyptia          NaN  \n",
       "28830                    Natrialba aegyptia          NaN  \n",
       "28831                   Halovivax asiaticus          NaN  \n",
       "28832              Natrialba chahannaoensis          NaN  \n",
       "28833                    Natrialba asiatica          NaN  \n",
       "28834              Natrialba hulunbeirensis          NaN  \n",
       "28835                 Natrialba taiwanensis  NR_113523.1  \n",
       "28836                   Natrinema altunense          NaN  \n",
       "28837                        Natrinema gari  NR_028167.1  \n",
       "28838                    Natrinema pallidum          NaN  \n",
       "28839                    Natrinema pallidum          NaN  \n",
       "28840                 Natrinema pellirubrum  NR_041943.1  \n",
       "28841             Natronobacterium gregoryi          NaN  \n",
       "28842                  Natrinema versiforme          NaN  \n",
       "28843                Natronococcus jeotgali          NaN  \n",
       "28844  Natronolimnohabitans innermongolicus          NaN  \n",
       "28845                Natronorubrum bangense          NaN  \n",
       "28846               Natronorubrum tibetense          NaN  \n",
       "28847          Natronorubrum sulfidifaciens  NR_029142.2  \n",
       "28848              Halalkalicoccus jeotgali  NR_102920.1  \n",
       "28849           Halogeometricum borinquense  NR_102892.1  \n",
       "28850                     Natrialba magadii  NR_028243.1  \n",
       "28851                    Haloferax volcanii  NR_028203.1  \n",
       "28852               Halococcus hamelinensis  NR_028168.1  \n",
       "28853          Haladaptatus paucihalophilus  NR_112874.1  \n",
       "28854          Haladaptatus paucihalophilus  NR_112874.1  \n",
       "28855          Haladaptatus paucihalophilus  NR_112874.1  \n",
       "28856       Methanobacterium thermaggregans  NR_104880.1  \n",
       "28857             Methanobacterium palustre  NR_041713.1  \n",
       "\n",
       "[28857 rows x 5 columns]"
      ]
     },
     "execution_count": 41,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "d=dict(zip(refseqnames_df.organism,refseqnames_df.NRaccession))\n",
    "#insdnames_df['NRaccession']=insdnames_df['organism'].map(d).fillna('')\n",
    "insdnames_df['NRaccession']=insdnames_df['organism'].map(d)\n",
    "insdnames_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism</th>\n",
       "      <th>type</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>U07934.1</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>type strain of Rhizobium ciceri</td>\n",
       "      <td>Mesorhizobium ciceri</td>\n",
       "      <td>NR_025953.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>X58561.1</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>X58558.1</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>type strain of Mycoplasma salivarium</td>\n",
       "      <td>Metamycoplasma salivarium</td>\n",
       "      <td>NR_113661.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>X58555.1</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>type strain of Mycoplasma hyorhinis</td>\n",
       "      <td>Mesomycoplasma hyorhinis</td>\n",
       "      <td>NR_041845.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>X58559.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>X58553.1</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>type strain of Mycoplasma fermentans</td>\n",
       "      <td>Mycoplasmopsis fermentans</td>\n",
       "      <td>NR_044666.2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>X58560.1</td>\n",
       "      <td>Mycoplasmopsis arginini</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Mycoplasmopsis arginini</td>\n",
       "      <td>NR_041743.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>X58557.1</td>\n",
       "      <td>Metamycoplasma arthritidis</td>\n",
       "      <td>type strain of Mycoplasma arthritidis</td>\n",
       "      <td>Metamycoplasma arthritidis</td>\n",
       "      <td>NR_044673.2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>FUEZ00000000.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>FUEZ01000004.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>FUFA00000000.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>FUFA01000004.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>FTRV00000000.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>FTRV01000016.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>FXEG00000000.2</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>LT721901.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>LT717701.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>FN185731.1</td>\n",
       "      <td>Levilactobacillus paucivorans</td>\n",
       "      <td>type strain of Lactobacillus paucivorans</td>\n",
       "      <td>Levilactobacillus paucivorans</td>\n",
       "      <td>NR_116943.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>Z14111.1</td>\n",
       "      <td>Pseudonocardia halophobica</td>\n",
       "      <td>type strain of Pseudonocardia halophobica</td>\n",
       "      <td>Pseudonocardia halophobica</td>\n",
       "      <td>NR_042004.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>M65011.1</td>\n",
       "      <td>Campylobacter fetus subsp. venerealis NCTC 10354</td>\n",
       "      <td>type strain of Campylobacter fetus subsp. vene...</td>\n",
       "      <td>Campylobacter fetus</td>\n",
       "      <td>NR_043597.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>AH001692.2</td>\n",
       "      <td>Fluoribacter dumoffii NY 23</td>\n",
       "      <td>type strain of Fluoribacter dumoffii</td>\n",
       "      <td>Fluoribacter dumoffii</td>\n",
       "      <td>NR_036989.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>AH001691.2</td>\n",
       "      <td>Legionella bozemanae</td>\n",
       "      <td>type strain of Fluoribacter bozemanae</td>\n",
       "      <td>Legionella bozemanae</td>\n",
       "      <td>NR_125584.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>AH001694.2</td>\n",
       "      <td>Fluoribacter gormanii</td>\n",
       "      <td>type strain of Fluoribacter gormanii</td>\n",
       "      <td>Fluoribacter gormanii</td>\n",
       "      <td>NR_026521.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>M36030.1</td>\n",
       "      <td>Legionella spiritensis</td>\n",
       "      <td>type strain of Legionella spiritensis</td>\n",
       "      <td>Legionella spiritensis</td>\n",
       "      <td>NR_117699.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>M96403.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>D12663.1</td>\n",
       "      <td>Cytophaga hutchinsonii ATCC 33406</td>\n",
       "      <td>type strain of Cytophaga hutchinsonii</td>\n",
       "      <td>Cytophaga hutchinsonii</td>\n",
       "      <td>NR_112977.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>D12658.1</td>\n",
       "      <td>Cytophaga aurantiaca</td>\n",
       "      <td>type strain of Cytophaga aurantiaca</td>\n",
       "      <td>Cytophaga aurantiaca</td>\n",
       "      <td>NR_025829.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>D12657.1</td>\n",
       "      <td>Chitinophaga arvensicola</td>\n",
       "      <td>type strain of Chitinophaga arvensicola</td>\n",
       "      <td>Chitinophaga arvensicola</td>\n",
       "      <td>NR_042512.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>D30774.1</td>\n",
       "      <td>Acidocella facilis</td>\n",
       "      <td>type strain of Acidocella facilis</td>\n",
       "      <td>Acidocella facilis</td>\n",
       "      <td>NR_025852.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28828</th>\n",
       "      <td>AOIS01000070.1</td>\n",
       "      <td>Haloterrigena salina JCM 13891</td>\n",
       "      <td>type strain of Haloterrigena salina</td>\n",
       "      <td>Haloterrigena salina</td>\n",
       "      <td>NR_028190.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28829</th>\n",
       "      <td>AOIP01000005.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_028176.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28830</th>\n",
       "      <td>AOIP01000006.1</td>\n",
       "      <td>Natrialba aegyptia DSM 13077</td>\n",
       "      <td>type strain of Natrialba aegyptia</td>\n",
       "      <td>Natrialba aegyptia</td>\n",
       "      <td>NR_028176.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28831</th>\n",
       "      <td>AOIQ01000016.1</td>\n",
       "      <td>Halovivax asiaticus JCM 14624</td>\n",
       "      <td>type strain of Halovivax asiaticus</td>\n",
       "      <td>Halovivax asiaticus</td>\n",
       "      <td>NR_112852.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28832</th>\n",
       "      <td>AOIN01000039.1</td>\n",
       "      <td>Natrialba chahannaoensis JCM 10990</td>\n",
       "      <td>type strain of Natrialba chahannaoensis</td>\n",
       "      <td>Natrialba chahannaoensis</td>\n",
       "      <td>NR_028181.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28833</th>\n",
       "      <td>AOIO01000040.1</td>\n",
       "      <td>Natrialba asiatica DSM 12278</td>\n",
       "      <td>type strain of Natrialba asiatica</td>\n",
       "      <td>Natrialba asiatica</td>\n",
       "      <td>NR_028214.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28834</th>\n",
       "      <td>AOIM01000020.1</td>\n",
       "      <td>Natrialba hulunbeirensis JCM 10989</td>\n",
       "      <td>type strain of Natrialba hulunbeirensis</td>\n",
       "      <td>Natrialba hulunbeirensis</td>\n",
       "      <td>NR_028177.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28835</th>\n",
       "      <td>AOIL01000067.1</td>\n",
       "      <td>Natrialba taiwanensis DSM 12281</td>\n",
       "      <td>type strain of Natrialba taiwanensis</td>\n",
       "      <td>Natrialba taiwanensis</td>\n",
       "      <td>NR_029124.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28836</th>\n",
       "      <td>AOIK01000039.1</td>\n",
       "      <td>Natrinema altunense JCM 12890</td>\n",
       "      <td>type strain of Natrinema altunense</td>\n",
       "      <td>Natrinema altunense</td>\n",
       "      <td>NR_028199.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28837</th>\n",
       "      <td>AOIJ01000051.1</td>\n",
       "      <td>Natrinema gari JCM 14663</td>\n",
       "      <td>type strain of Natrinema gari</td>\n",
       "      <td>Natrinema gari</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28838</th>\n",
       "      <td>AOII01000104.1</td>\n",
       "      <td>Natrinema pallidum DSM 3751</td>\n",
       "      <td>type strain of Natrinema pallidum</td>\n",
       "      <td>Natrinema pallidum</td>\n",
       "      <td>NR_041944.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28839</th>\n",
       "      <td>AOII01000106.1</td>\n",
       "      <td>Natrinema pallidum DSM 3751</td>\n",
       "      <td>type strain of Natrinema pallidum</td>\n",
       "      <td>Natrinema pallidum</td>\n",
       "      <td>NR_041944.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28840</th>\n",
       "      <td>AOIE01000102.1</td>\n",
       "      <td>Natrinema pellirubrum DSM 15624</td>\n",
       "      <td>type strain of Natrinema pellirubrum</td>\n",
       "      <td>Natrinema pellirubrum</td>\n",
       "      <td>NR_102444.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28841</th>\n",
       "      <td>AOIC01000047.1</td>\n",
       "      <td>Natronobacterium gregoryi SP2</td>\n",
       "      <td>type strain of Natronobacterium gregoryi</td>\n",
       "      <td>Natronobacterium gregoryi</td>\n",
       "      <td>NR_028223.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28842</th>\n",
       "      <td>AOID01000040.1</td>\n",
       "      <td>Natrinema versiforme JCM 10478</td>\n",
       "      <td>type strain of Natrinema versiforme</td>\n",
       "      <td>Natrinema versiforme</td>\n",
       "      <td>NR_028150.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28843</th>\n",
       "      <td>AOIA01000029.1</td>\n",
       "      <td>Natronococcus jeotgali DSM 18795</td>\n",
       "      <td>type strain of Natronococcus jeotgali</td>\n",
       "      <td>Natronococcus jeotgali</td>\n",
       "      <td>NR_112857.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28844</th>\n",
       "      <td>AOHZ01000042.1</td>\n",
       "      <td>Natronolimnohabitans innermongolicus JCM 12255</td>\n",
       "      <td>type strain of Natronolimnobius innermongolicus</td>\n",
       "      <td>Natronolimnohabitans innermongolicus</td>\n",
       "      <td>NR_028162.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28845</th>\n",
       "      <td>AOHY01000010.1</td>\n",
       "      <td>Natronorubrum bangense JCM 10635</td>\n",
       "      <td>type strain of Natronorubrum bangense</td>\n",
       "      <td>Natronorubrum bangense</td>\n",
       "      <td>NR_028252.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28846</th>\n",
       "      <td>AOHW01000002.1</td>\n",
       "      <td>Natronorubrum tibetense GA33</td>\n",
       "      <td>type strain of Natronorubrum tibetense</td>\n",
       "      <td>Natronorubrum tibetense</td>\n",
       "      <td>NR_028147.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28847</th>\n",
       "      <td>AOHX01000046.1</td>\n",
       "      <td>Natronorubrum sulfidifaciens JCM 14089</td>\n",
       "      <td>type strain of Natronorubrum sulfidifaciens</td>\n",
       "      <td>Natronorubrum sulfidifaciens</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28848</th>\n",
       "      <td>AOHV01000046.1</td>\n",
       "      <td>Halalkalicoccus jeotgali B3</td>\n",
       "      <td>type strain of Halalkalicoccus jeotgali</td>\n",
       "      <td>Halalkalicoccus jeotgali</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28849</th>\n",
       "      <td>AOHT01000014.1</td>\n",
       "      <td>Halogeometricum borinquense DSM 11551</td>\n",
       "      <td>type strain of Halogeometricum borinquense</td>\n",
       "      <td>Halogeometricum borinquense</td>\n",
       "      <td>NR_028170.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28850</th>\n",
       "      <td>AOHS01000039.1</td>\n",
       "      <td>Natrialba magadii ATCC 43099</td>\n",
       "      <td>type strain of Natrialba magadii</td>\n",
       "      <td>Natrialba magadii</td>\n",
       "      <td>NR_113522.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28851</th>\n",
       "      <td>AOHU01000104.1</td>\n",
       "      <td>Haloferax volcanii DS2</td>\n",
       "      <td>type strain of Haloferax volcanii</td>\n",
       "      <td>Haloferax volcanii</td>\n",
       "      <td>NR_113448.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28852</th>\n",
       "      <td>AB301068.1</td>\n",
       "      <td>Halococcus hamelinensis 100A6</td>\n",
       "      <td>type strain of Halococcus hamelinensis</td>\n",
       "      <td>Halococcus hamelinensis</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28853</th>\n",
       "      <td>AEMG01000017.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28854</th>\n",
       "      <td>AEMG01000020.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28855</th>\n",
       "      <td>AEMG01000022.1</td>\n",
       "      <td>Haladaptatus paucihalophilus DX253</td>\n",
       "      <td>type strain of Haladaptatus paucihalophilus</td>\n",
       "      <td>Haladaptatus paucihalophilus</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28856</th>\n",
       "      <td>AF095264.1</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>type strain of Methanobacterium thermaggregans</td>\n",
       "      <td>Methanobacterium thermaggregans</td>\n",
       "      <td>NR_104880.1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28857</th>\n",
       "      <td>AF095263.1</td>\n",
       "      <td>Methanobacterium palustre</td>\n",
       "      <td>type strain of Methanobacterium palustre</td>\n",
       "      <td>Methanobacterium palustre</td>\n",
       "      <td>NR_041713.1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>28857 rows × 5 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "            accession                                          organism  \\\n",
       "1            U07934.1                              Mesorhizobium ciceri   \n",
       "2            X58561.1                            Ureaplasma urealyticum   \n",
       "3            X58558.1                         Metamycoplasma salivarium   \n",
       "4            X58555.1                          Mesomycoplasma hyorhinis   \n",
       "5            X58559.1                     Mycoplasma hominis ATCC 23114   \n",
       "6            X58553.1                         Mycoplasmopsis fermentans   \n",
       "7            X58560.1                           Mycoplasmopsis arginini   \n",
       "8            X58557.1                        Metamycoplasma arthritidis   \n",
       "9      FUEZ00000000.1                  Mycobacterium numidiamassiliense   \n",
       "10     FUEZ01000004.1                  Mycobacterium numidiamassiliense   \n",
       "11     FUFA00000000.1                    Mycobacterium rhizamassiliense   \n",
       "12     FUFA01000004.1                    Mycobacterium rhizamassiliense   \n",
       "13     FTRV00000000.1                    Mycobacterium terramassiliense   \n",
       "14     FTRV01000016.1                    Mycobacterium terramassiliense   \n",
       "15     FXEG00000000.2                           Mycobacterium ahvazicum   \n",
       "16     FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "17         LT721901.1                    Mycobacterium rhizamassiliense   \n",
       "18         LT717701.1                    Mycobacterium terramassiliense   \n",
       "19         FN185731.1                     Levilactobacillus paucivorans   \n",
       "20           Z14111.1                        Pseudonocardia halophobica   \n",
       "21           M65011.1  Campylobacter fetus subsp. venerealis NCTC 10354   \n",
       "22         AH001692.2                       Fluoribacter dumoffii NY 23   \n",
       "23         AH001691.2                              Legionella bozemanae   \n",
       "24         AH001694.2                             Fluoribacter gormanii   \n",
       "25           M36030.1                            Legionella spiritensis   \n",
       "26           M96403.1                              Nitrosomonas mobilis   \n",
       "27           D12663.1                 Cytophaga hutchinsonii ATCC 33406   \n",
       "28           D12658.1                              Cytophaga aurantiaca   \n",
       "29           D12657.1                          Chitinophaga arvensicola   \n",
       "30           D30774.1                                Acidocella facilis   \n",
       "...               ...                                               ...   \n",
       "28828  AOIS01000070.1                    Haloterrigena salina JCM 13891   \n",
       "28829  AOIP01000005.1                      Natrialba aegyptia DSM 13077   \n",
       "28830  AOIP01000006.1                      Natrialba aegyptia DSM 13077   \n",
       "28831  AOIQ01000016.1                     Halovivax asiaticus JCM 14624   \n",
       "28832  AOIN01000039.1                Natrialba chahannaoensis JCM 10990   \n",
       "28833  AOIO01000040.1                      Natrialba asiatica DSM 12278   \n",
       "28834  AOIM01000020.1                Natrialba hulunbeirensis JCM 10989   \n",
       "28835  AOIL01000067.1                   Natrialba taiwanensis DSM 12281   \n",
       "28836  AOIK01000039.1                     Natrinema altunense JCM 12890   \n",
       "28837  AOIJ01000051.1                          Natrinema gari JCM 14663   \n",
       "28838  AOII01000104.1                       Natrinema pallidum DSM 3751   \n",
       "28839  AOII01000106.1                       Natrinema pallidum DSM 3751   \n",
       "28840  AOIE01000102.1                   Natrinema pellirubrum DSM 15624   \n",
       "28841  AOIC01000047.1                     Natronobacterium gregoryi SP2   \n",
       "28842  AOID01000040.1                    Natrinema versiforme JCM 10478   \n",
       "28843  AOIA01000029.1                  Natronococcus jeotgali DSM 18795   \n",
       "28844  AOHZ01000042.1    Natronolimnohabitans innermongolicus JCM 12255   \n",
       "28845  AOHY01000010.1                  Natronorubrum bangense JCM 10635   \n",
       "28846  AOHW01000002.1                      Natronorubrum tibetense GA33   \n",
       "28847  AOHX01000046.1            Natronorubrum sulfidifaciens JCM 14089   \n",
       "28848  AOHV01000046.1                       Halalkalicoccus jeotgali B3   \n",
       "28849  AOHT01000014.1             Halogeometricum borinquense DSM 11551   \n",
       "28850  AOHS01000039.1                      Natrialba magadii ATCC 43099   \n",
       "28851  AOHU01000104.1                            Haloferax volcanii DS2   \n",
       "28852      AB301068.1                     Halococcus hamelinensis 100A6   \n",
       "28853  AEMG01000017.1                Haladaptatus paucihalophilus DX253   \n",
       "28854  AEMG01000020.1                Haladaptatus paucihalophilus DX253   \n",
       "28855  AEMG01000022.1                Haladaptatus paucihalophilus DX253   \n",
       "28856      AF095264.1                   Methanobacterium thermaggregans   \n",
       "28857      AF095263.1                         Methanobacterium palustre   \n",
       "\n",
       "                                                    type  \\\n",
       "1                        type strain of Rhizobium ciceri   \n",
       "2                  type strain of Ureaplasma urealyticum   \n",
       "3                   type strain of Mycoplasma salivarium   \n",
       "4                    type strain of Mycoplasma hyorhinis   \n",
       "5                      type strain of Mycoplasma hominis   \n",
       "6                   type strain of Mycoplasma fermentans   \n",
       "7                                                    NaN   \n",
       "8                  type strain of Mycoplasma arthritidis   \n",
       "9      type material of Mycobacterium numidiamassiliense   \n",
       "10     type material of Mycobacterium numidiamassiliense   \n",
       "11       type material of Mycobacterium rhizamassiliense   \n",
       "12       type material of Mycobacterium rhizamassiliense   \n",
       "13       type material of Mycobacterium terramassiliense   \n",
       "14       type material of Mycobacterium terramassiliense   \n",
       "15                type strain of Mycobacterium ahvazicum   \n",
       "16                type strain of Mycobacterium ahvazicum   \n",
       "17       type material of Mycobacterium rhizamassiliense   \n",
       "18       type material of Mycobacterium terramassiliense   \n",
       "19              type strain of Lactobacillus paucivorans   \n",
       "20             type strain of Pseudonocardia halophobica   \n",
       "21     type strain of Campylobacter fetus subsp. vene...   \n",
       "22                  type strain of Fluoribacter dumoffii   \n",
       "23                 type strain of Fluoribacter bozemanae   \n",
       "24                  type strain of Fluoribacter gormanii   \n",
       "25                 type strain of Legionella spiritensis   \n",
       "26                   type strain of Nitrosomonas mobilis   \n",
       "27                 type strain of Cytophaga hutchinsonii   \n",
       "28                   type strain of Cytophaga aurantiaca   \n",
       "29               type strain of Chitinophaga arvensicola   \n",
       "30                     type strain of Acidocella facilis   \n",
       "...                                                  ...   \n",
       "28828                type strain of Haloterrigena salina   \n",
       "28829                  type strain of Natrialba aegyptia   \n",
       "28830                  type strain of Natrialba aegyptia   \n",
       "28831                 type strain of Halovivax asiaticus   \n",
       "28832            type strain of Natrialba chahannaoensis   \n",
       "28833                  type strain of Natrialba asiatica   \n",
       "28834            type strain of Natrialba hulunbeirensis   \n",
       "28835               type strain of Natrialba taiwanensis   \n",
       "28836                 type strain of Natrinema altunense   \n",
       "28837                      type strain of Natrinema gari   \n",
       "28838                  type strain of Natrinema pallidum   \n",
       "28839                  type strain of Natrinema pallidum   \n",
       "28840               type strain of Natrinema pellirubrum   \n",
       "28841           type strain of Natronobacterium gregoryi   \n",
       "28842                type strain of Natrinema versiforme   \n",
       "28843              type strain of Natronococcus jeotgali   \n",
       "28844    type strain of Natronolimnobius innermongolicus   \n",
       "28845              type strain of Natronorubrum bangense   \n",
       "28846             type strain of Natronorubrum tibetense   \n",
       "28847        type strain of Natronorubrum sulfidifaciens   \n",
       "28848            type strain of Halalkalicoccus jeotgali   \n",
       "28849         type strain of Halogeometricum borinquense   \n",
       "28850                   type strain of Natrialba magadii   \n",
       "28851                  type strain of Haloferax volcanii   \n",
       "28852             type strain of Halococcus hamelinensis   \n",
       "28853        type strain of Haladaptatus paucihalophilus   \n",
       "28854        type strain of Haladaptatus paucihalophilus   \n",
       "28855        type strain of Haladaptatus paucihalophilus   \n",
       "28856     type strain of Methanobacterium thermaggregans   \n",
       "28857           type strain of Methanobacterium palustre   \n",
       "\n",
       "                                   binomial  NRaccession  \n",
       "1                      Mesorhizobium ciceri  NR_025953.1  \n",
       "2                    Ureaplasma urealyticum          NaN  \n",
       "3                 Metamycoplasma salivarium  NR_113661.1  \n",
       "4                  Mesomycoplasma hyorhinis  NR_041845.1  \n",
       "5                        Mycoplasma hominis          NaN  \n",
       "6                 Mycoplasmopsis fermentans  NR_044666.2  \n",
       "7                   Mycoplasmopsis arginini  NR_041743.1  \n",
       "8                Metamycoplasma arthritidis  NR_044673.2  \n",
       "9          Mycobacterium numidiamassiliense          NaN  \n",
       "10         Mycobacterium numidiamassiliense          NaN  \n",
       "11           Mycobacterium rhizamassiliense          NaN  \n",
       "12           Mycobacterium rhizamassiliense          NaN  \n",
       "13           Mycobacterium terramassiliense          NaN  \n",
       "14           Mycobacterium terramassiliense          NaN  \n",
       "15                  Mycobacterium ahvazicum          NaN  \n",
       "16                  Mycobacterium ahvazicum          NaN  \n",
       "17           Mycobacterium rhizamassiliense          NaN  \n",
       "18           Mycobacterium terramassiliense          NaN  \n",
       "19            Levilactobacillus paucivorans  NR_116943.1  \n",
       "20               Pseudonocardia halophobica  NR_042004.1  \n",
       "21                      Campylobacter fetus  NR_043597.1  \n",
       "22                    Fluoribacter dumoffii  NR_036989.1  \n",
       "23                     Legionella bozemanae  NR_125584.1  \n",
       "24                    Fluoribacter gormanii  NR_026521.1  \n",
       "25                   Legionella spiritensis  NR_117699.1  \n",
       "26                     Nitrosomonas mobilis          NaN  \n",
       "27                   Cytophaga hutchinsonii  NR_112977.1  \n",
       "28                     Cytophaga aurantiaca  NR_025829.1  \n",
       "29                 Chitinophaga arvensicola  NR_042512.1  \n",
       "30                       Acidocella facilis  NR_025852.1  \n",
       "...                                     ...          ...  \n",
       "28828                  Haloterrigena salina  NR_028190.1  \n",
       "28829                    Natrialba aegyptia  NR_028176.1  \n",
       "28830                    Natrialba aegyptia  NR_028176.1  \n",
       "28831                   Halovivax asiaticus  NR_112852.1  \n",
       "28832              Natrialba chahannaoensis  NR_028181.1  \n",
       "28833                    Natrialba asiatica  NR_028214.1  \n",
       "28834              Natrialba hulunbeirensis  NR_028177.1  \n",
       "28835                 Natrialba taiwanensis  NR_029124.1  \n",
       "28836                   Natrinema altunense  NR_028199.1  \n",
       "28837                        Natrinema gari          NaN  \n",
       "28838                    Natrinema pallidum  NR_041944.1  \n",
       "28839                    Natrinema pallidum  NR_041944.1  \n",
       "28840                 Natrinema pellirubrum  NR_102444.1  \n",
       "28841             Natronobacterium gregoryi  NR_028223.1  \n",
       "28842                  Natrinema versiforme  NR_028150.1  \n",
       "28843                Natronococcus jeotgali  NR_112857.1  \n",
       "28844  Natronolimnohabitans innermongolicus  NR_028162.1  \n",
       "28845                Natronorubrum bangense  NR_028252.1  \n",
       "28846               Natronorubrum tibetense  NR_028147.1  \n",
       "28847          Natronorubrum sulfidifaciens          NaN  \n",
       "28848              Halalkalicoccus jeotgali          NaN  \n",
       "28849           Halogeometricum borinquense  NR_028170.1  \n",
       "28850                     Natrialba magadii  NR_113522.1  \n",
       "28851                    Haloferax volcanii  NR_113448.1  \n",
       "28852               Halococcus hamelinensis          NaN  \n",
       "28853          Haladaptatus paucihalophilus          NaN  \n",
       "28854          Haladaptatus paucihalophilus          NaN  \n",
       "28855          Haladaptatus paucihalophilus          NaN  \n",
       "28856       Methanobacterium thermaggregans  NR_104880.1  \n",
       "28857             Methanobacterium palustre  NR_041713.1  \n",
       "\n",
       "[28857 rows x 5 columns]"
      ]
     },
     "execution_count": 45,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "b=dict(zip(refseqnames_df.organism,refseqnames_df.NRaccession))\n",
    "insdnames_df['NRaccession']=insdnames_df['binomial'].map(d)\n",
    "insdnames_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 67,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>accession</th>\n",
       "      <th>organism_x</th>\n",
       "      <th>type_x</th>\n",
       "      <th>binomial</th>\n",
       "      <th>NRaccession</th>\n",
       "      <th>organism_y</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>X58561.1</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>AY741673.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>AF073450.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>AF059330.1</td>\n",
       "      <td>Ureaplasma urealyticum serovar 8 str. ATCC 27618</td>\n",
       "      <td>type strain of Ureaplasma urealyticum</td>\n",
       "      <td>Ureaplasma urealyticum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>X58559.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>32</th>\n",
       "      <td>M24473.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>33</th>\n",
       "      <td>JN935871.1</td>\n",
       "      <td>Mycoplasma hominis ATCC 23114</td>\n",
       "      <td>type strain of Mycoplasma hominis</td>\n",
       "      <td>Mycoplasma hominis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50</th>\n",
       "      <td>FUEZ00000000.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>51</th>\n",
       "      <td>FUEZ01000004.1</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>type material of Mycobacterium numidiamassiliense</td>\n",
       "      <td>Mycobacterium numidiamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>52</th>\n",
       "      <td>FUFA00000000.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>53</th>\n",
       "      <td>FUFA01000004.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>LT721901.1</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>type material of Mycobacterium rhizamassiliense</td>\n",
       "      <td>Mycobacterium rhizamassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>55</th>\n",
       "      <td>FTRV00000000.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>56</th>\n",
       "      <td>FTRV01000016.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>57</th>\n",
       "      <td>LT717701.1</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>type material of Mycobacterium terramassiliense</td>\n",
       "      <td>Mycobacterium terramassiliense</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>58</th>\n",
       "      <td>FXEG00000000.2</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>59</th>\n",
       "      <td>FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>60</th>\n",
       "      <td>NZ_FXEG02000003.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>61</th>\n",
       "      <td>NZ_FXEG02000002.1</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>type strain of Mycobacterium ahvazicum</td>\n",
       "      <td>Mycobacterium ahvazicum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>104</th>\n",
       "      <td>M96403.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>105</th>\n",
       "      <td>AF287297.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>106</th>\n",
       "      <td>AJ298728.1</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>type strain of Nitrosomonas mobilis</td>\n",
       "      <td>Nitrosomonas mobilis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>163</th>\n",
       "      <td>X52909.1</td>\n",
       "      <td>Hirschia baltica ATCC 49814</td>\n",
       "      <td>type strain of Hirschia baltica</td>\n",
       "      <td>Hirschia baltica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>164</th>\n",
       "      <td>AJ421782.1</td>\n",
       "      <td>Hirschia baltica ATCC 49814</td>\n",
       "      <td>type strain of Hirschia baltica</td>\n",
       "      <td>Hirschia baltica</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>AH001799.2</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>HQ823668.1</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>L40993.1</td>\n",
       "      <td>Thiothrix nivea DSM 5205</td>\n",
       "      <td>type strain of Thiothrix nivea</td>\n",
       "      <td>Thiothrix nivea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>243</th>\n",
       "      <td>X92357.1</td>\n",
       "      <td>Geodermatophilus obscurus subsp. utahensis</td>\n",
       "      <td>type strain of Geodermatophilus obscurus subsp...</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>244</th>\n",
       "      <td>X92356.1</td>\n",
       "      <td>Geodermatophilus obscurus DSM 43160</td>\n",
       "      <td>type strain of Geodermatophilus obscurus</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>245</th>\n",
       "      <td>JQ899243.1</td>\n",
       "      <td>Geodermatophilus obscurus DSM 43160</td>\n",
       "      <td>type strain of Geodermatophilus obscurus</td>\n",
       "      <td>Geodermatophilus obscurus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45058</th>\n",
       "      <td>AY350586.2</td>\n",
       "      <td>Acidilobus saccharovorans 345-15</td>\n",
       "      <td>type strain of Acidilobus saccharovorans</td>\n",
       "      <td>Acidilobus saccharovorans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45059</th>\n",
       "      <td>DQ282124.1</td>\n",
       "      <td>Methanoregula boonei 6A8</td>\n",
       "      <td>type strain of Methanoregula boonei</td>\n",
       "      <td>Methanoregula boonei</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45068</th>\n",
       "      <td>U17365.1</td>\n",
       "      <td>Halorubrum lacusprofundi ATCC 49239</td>\n",
       "      <td>type strain of Halorubrum lacusprofundi</td>\n",
       "      <td>Halorubrum lacusprofundi</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45069</th>\n",
       "      <td>X82170.1</td>\n",
       "      <td>Halorubrum lacusprofundi ATCC 49239</td>\n",
       "      <td>type strain of Halorubrum lacusprofundi</td>\n",
       "      <td>Halorubrum lacusprofundi</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45070</th>\n",
       "      <td>DQ195164.1</td>\n",
       "      <td>Methanococcus aeolicus Nankai-3</td>\n",
       "      <td>type strain of Methanococcus aeolicus</td>\n",
       "      <td>Methanococcus aeolicus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45089</th>\n",
       "      <td>DQ167232.1</td>\n",
       "      <td>Thermococcus onnurineus NA1</td>\n",
       "      <td>type strain of Thermococcus onnurineus</td>\n",
       "      <td>Thermococcus onnurineus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45090</th>\n",
       "      <td>DQ017835.1</td>\n",
       "      <td>Halococcus hamelinensis 100A6</td>\n",
       "      <td>type strain of Halococcus hamelinensis</td>\n",
       "      <td>Halococcus hamelinensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45091</th>\n",
       "      <td>AOMB01000011.1</td>\n",
       "      <td>Halococcus hamelinensis 100A6</td>\n",
       "      <td>type strain of Halococcus hamelinensis</td>\n",
       "      <td>Halococcus hamelinensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45092</th>\n",
       "      <td>AB301068.1</td>\n",
       "      <td>Halococcus hamelinensis 100A6</td>\n",
       "      <td>type strain of Halococcus hamelinensis</td>\n",
       "      <td>Halococcus hamelinensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45105</th>\n",
       "      <td>AY817738.1</td>\n",
       "      <td>Methanosaeta harundinacea 8Ac</td>\n",
       "      <td>type strain of Methanosaeta harundinacea</td>\n",
       "      <td>Methanosaeta harundinacea</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45178</th>\n",
       "      <td>AY099174.1</td>\n",
       "      <td>Thermococcus celer Vu 13 = JCM 8558</td>\n",
       "      <td>type strain of Thermococcus celer</td>\n",
       "      <td>Thermococcus celer</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45179</th>\n",
       "      <td>CP014854.1</td>\n",
       "      <td>Thermococcus celer Vu 13 = JCM 8558</td>\n",
       "      <td>type strain of Thermococcus celer</td>\n",
       "      <td>Thermococcus celer</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45209</th>\n",
       "      <td>AY196674.1</td>\n",
       "      <td>Methanoculleus bourgensis MS2</td>\n",
       "      <td>type strain of Methanogenium bourgense</td>\n",
       "      <td>Methanoculleus bourgensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45219</th>\n",
       "      <td>AF145441.1</td>\n",
       "      <td>Ferroplasma acidarmanus fer1</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Ferroplasma acidarmanus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45224</th>\n",
       "      <td>U76534.1</td>\n",
       "      <td>Thermococcus zilligii AN1</td>\n",
       "      <td>type strain of Thermococcus zilligii</td>\n",
       "      <td>Thermococcus zilligii</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45225</th>\n",
       "      <td>D38650.2</td>\n",
       "      <td>Thermococcus kodakarensis KOD1</td>\n",
       "      <td>type strain of Thermococcus kodakarensis</td>\n",
       "      <td>Thermococcus kodakarensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45257</th>\n",
       "      <td>X99556.1</td>\n",
       "      <td>Thermosphaera aggregans DSM 11486</td>\n",
       "      <td>type strain of Thermosphaera aggregans</td>\n",
       "      <td>Thermosphaera aggregans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45258</th>\n",
       "      <td>X99553.1</td>\n",
       "      <td>Hyperthermus butylicus DSM 5456</td>\n",
       "      <td>type strain of Hyperthermus butylicus</td>\n",
       "      <td>Hyperthermus butylicus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45264</th>\n",
       "      <td>AB033623.1</td>\n",
       "      <td>Thermococcus litoralis DSM 5473</td>\n",
       "      <td>type strain of Thermococcus litoralis</td>\n",
       "      <td>Thermococcus litoralis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45265</th>\n",
       "      <td>CP006670.1</td>\n",
       "      <td>Thermococcus litoralis DSM 5473</td>\n",
       "      <td>type strain of Thermococcus litoralis</td>\n",
       "      <td>Thermococcus litoralis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45266</th>\n",
       "      <td>AJ271794.1</td>\n",
       "      <td>Ignicoccus pacificus DSM 13166</td>\n",
       "      <td>type strain of Ignicoccus pacificus</td>\n",
       "      <td>Ignicoccus pacificus</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45279</th>\n",
       "      <td>Y16428.1</td>\n",
       "      <td>Methanofollis liminatans DSM 4140</td>\n",
       "      <td>type strain of Methanofollis liminatans</td>\n",
       "      <td>Methanofollis liminatans</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45293</th>\n",
       "      <td>CP006646.1</td>\n",
       "      <td>Thermofilum adornatum</td>\n",
       "      <td>type strain of Thermofilum adornatum</td>\n",
       "      <td>Thermofilum adornatum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45294</th>\n",
       "      <td>RKLU01000004.1</td>\n",
       "      <td>Halonotius terrestris</td>\n",
       "      <td>type strain of Halonotius terrestris</td>\n",
       "      <td>Halonotius terrestris</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45298</th>\n",
       "      <td>LQMQ01000049.1</td>\n",
       "      <td>Candidatus Hadarchaeum yellowstonense</td>\n",
       "      <td>reference strain of Candidatus Hadarchaeum yel...</td>\n",
       "      <td>Candidatus Hadarchaeum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45307</th>\n",
       "      <td>ASGZ01000037.1</td>\n",
       "      <td>Candidatus Halobonum tyrrellensis G22</td>\n",
       "      <td>reference strain of Candidatus Halobonum tyrre...</td>\n",
       "      <td>Candidatus Halobonum</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45308</th>\n",
       "      <td>AOMC01000054.1</td>\n",
       "      <td>Halococcus morrhuae DSM 1307</td>\n",
       "      <td>type strain of Halococcus morrhuae</td>\n",
       "      <td>Halococcus morrhuae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45309</th>\n",
       "      <td>AOLS01000010.1</td>\n",
       "      <td>Haloarcula californiae ATCC 33799</td>\n",
       "      <td>type strain of Haloarcula californiae</td>\n",
       "      <td>Haloarcula californiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45310</th>\n",
       "      <td>AOLS01000018.1</td>\n",
       "      <td>Haloarcula californiae ATCC 33799</td>\n",
       "      <td>type strain of Haloarcula californiae</td>\n",
       "      <td>Haloarcula californiae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>45322</th>\n",
       "      <td>AOJK01000040.1</td>\n",
       "      <td>Halorubrum californiensis DSM 19288</td>\n",
       "      <td>type strain of Halorubrum californiense</td>\n",
       "      <td>Halorubrum californiensis</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>6104 rows × 6 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "               accession                                        organism_x  \\\n",
       "9               X58561.1                            Ureaplasma urealyticum   \n",
       "10            AY741673.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "11            AF073450.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "12            AF059330.1  Ureaplasma urealyticum serovar 8 str. ATCC 27618   \n",
       "31              X58559.1                     Mycoplasma hominis ATCC 23114   \n",
       "32              M24473.1                     Mycoplasma hominis ATCC 23114   \n",
       "33            JN935871.1                     Mycoplasma hominis ATCC 23114   \n",
       "50        FUEZ00000000.1                  Mycobacterium numidiamassiliense   \n",
       "51        FUEZ01000004.1                  Mycobacterium numidiamassiliense   \n",
       "52        FUFA00000000.1                    Mycobacterium rhizamassiliense   \n",
       "53        FUFA01000004.1                    Mycobacterium rhizamassiliense   \n",
       "54            LT721901.1                    Mycobacterium rhizamassiliense   \n",
       "55        FTRV00000000.1                    Mycobacterium terramassiliense   \n",
       "56        FTRV01000016.1                    Mycobacterium terramassiliense   \n",
       "57            LT717701.1                    Mycobacterium terramassiliense   \n",
       "58        FXEG00000000.2                           Mycobacterium ahvazicum   \n",
       "59        FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "60     NZ_FXEG02000003.1                           Mycobacterium ahvazicum   \n",
       "61     NZ_FXEG02000002.1                           Mycobacterium ahvazicum   \n",
       "104             M96403.1                              Nitrosomonas mobilis   \n",
       "105           AF287297.1                              Nitrosomonas mobilis   \n",
       "106           AJ298728.1                              Nitrosomonas mobilis   \n",
       "163             X52909.1                       Hirschia baltica ATCC 49814   \n",
       "164           AJ421782.1                       Hirschia baltica ATCC 49814   \n",
       "219           AH001799.2                          Thiothrix nivea DSM 5205   \n",
       "220           HQ823668.1                          Thiothrix nivea DSM 5205   \n",
       "221             L40993.1                          Thiothrix nivea DSM 5205   \n",
       "243             X92357.1        Geodermatophilus obscurus subsp. utahensis   \n",
       "244             X92356.1               Geodermatophilus obscurus DSM 43160   \n",
       "245           JQ899243.1               Geodermatophilus obscurus DSM 43160   \n",
       "...                  ...                                               ...   \n",
       "45058         AY350586.2                  Acidilobus saccharovorans 345-15   \n",
       "45059         DQ282124.1                          Methanoregula boonei 6A8   \n",
       "45068           U17365.1               Halorubrum lacusprofundi ATCC 49239   \n",
       "45069           X82170.1               Halorubrum lacusprofundi ATCC 49239   \n",
       "45070         DQ195164.1                   Methanococcus aeolicus Nankai-3   \n",
       "45089         DQ167232.1                       Thermococcus onnurineus NA1   \n",
       "45090         DQ017835.1                     Halococcus hamelinensis 100A6   \n",
       "45091     AOMB01000011.1                     Halococcus hamelinensis 100A6   \n",
       "45092         AB301068.1                     Halococcus hamelinensis 100A6   \n",
       "45105         AY817738.1                     Methanosaeta harundinacea 8Ac   \n",
       "45178         AY099174.1               Thermococcus celer Vu 13 = JCM 8558   \n",
       "45179         CP014854.1               Thermococcus celer Vu 13 = JCM 8558   \n",
       "45209         AY196674.1                     Methanoculleus bourgensis MS2   \n",
       "45219         AF145441.1                      Ferroplasma acidarmanus fer1   \n",
       "45224           U76534.1                         Thermococcus zilligii AN1   \n",
       "45225           D38650.2                    Thermococcus kodakarensis KOD1   \n",
       "45257           X99556.1                 Thermosphaera aggregans DSM 11486   \n",
       "45258           X99553.1                   Hyperthermus butylicus DSM 5456   \n",
       "45264         AB033623.1                   Thermococcus litoralis DSM 5473   \n",
       "45265         CP006670.1                   Thermococcus litoralis DSM 5473   \n",
       "45266         AJ271794.1                    Ignicoccus pacificus DSM 13166   \n",
       "45279           Y16428.1                 Methanofollis liminatans DSM 4140   \n",
       "45293         CP006646.1                             Thermofilum adornatum   \n",
       "45294     RKLU01000004.1                             Halonotius terrestris   \n",
       "45298     LQMQ01000049.1             Candidatus Hadarchaeum yellowstonense   \n",
       "45307     ASGZ01000037.1             Candidatus Halobonum tyrrellensis G22   \n",
       "45308     AOMC01000054.1                      Halococcus morrhuae DSM 1307   \n",
       "45309     AOLS01000010.1                 Haloarcula californiae ATCC 33799   \n",
       "45310     AOLS01000018.1                 Haloarcula californiae ATCC 33799   \n",
       "45322     AOJK01000040.1               Halorubrum californiensis DSM 19288   \n",
       "\n",
       "                                                  type_x  \\\n",
       "9                  type strain of Ureaplasma urealyticum   \n",
       "10                 type strain of Ureaplasma urealyticum   \n",
       "11                 type strain of Ureaplasma urealyticum   \n",
       "12                 type strain of Ureaplasma urealyticum   \n",
       "31                     type strain of Mycoplasma hominis   \n",
       "32                     type strain of Mycoplasma hominis   \n",
       "33                     type strain of Mycoplasma hominis   \n",
       "50     type material of Mycobacterium numidiamassiliense   \n",
       "51     type material of Mycobacterium numidiamassiliense   \n",
       "52       type material of Mycobacterium rhizamassiliense   \n",
       "53       type material of Mycobacterium rhizamassiliense   \n",
       "54       type material of Mycobacterium rhizamassiliense   \n",
       "55       type material of Mycobacterium terramassiliense   \n",
       "56       type material of Mycobacterium terramassiliense   \n",
       "57       type material of Mycobacterium terramassiliense   \n",
       "58                type strain of Mycobacterium ahvazicum   \n",
       "59                type strain of Mycobacterium ahvazicum   \n",
       "60                type strain of Mycobacterium ahvazicum   \n",
       "61                type strain of Mycobacterium ahvazicum   \n",
       "104                  type strain of Nitrosomonas mobilis   \n",
       "105                  type strain of Nitrosomonas mobilis   \n",
       "106                  type strain of Nitrosomonas mobilis   \n",
       "163                      type strain of Hirschia baltica   \n",
       "164                      type strain of Hirschia baltica   \n",
       "219                       type strain of Thiothrix nivea   \n",
       "220                       type strain of Thiothrix nivea   \n",
       "221                       type strain of Thiothrix nivea   \n",
       "243    type strain of Geodermatophilus obscurus subsp...   \n",
       "244             type strain of Geodermatophilus obscurus   \n",
       "245             type strain of Geodermatophilus obscurus   \n",
       "...                                                  ...   \n",
       "45058           type strain of Acidilobus saccharovorans   \n",
       "45059                type strain of Methanoregula boonei   \n",
       "45068            type strain of Halorubrum lacusprofundi   \n",
       "45069            type strain of Halorubrum lacusprofundi   \n",
       "45070              type strain of Methanococcus aeolicus   \n",
       "45089             type strain of Thermococcus onnurineus   \n",
       "45090             type strain of Halococcus hamelinensis   \n",
       "45091             type strain of Halococcus hamelinensis   \n",
       "45092             type strain of Halococcus hamelinensis   \n",
       "45105           type strain of Methanosaeta harundinacea   \n",
       "45178                  type strain of Thermococcus celer   \n",
       "45179                  type strain of Thermococcus celer   \n",
       "45209             type strain of Methanogenium bourgense   \n",
       "45219                                                NaN   \n",
       "45224               type strain of Thermococcus zilligii   \n",
       "45225           type strain of Thermococcus kodakarensis   \n",
       "45257             type strain of Thermosphaera aggregans   \n",
       "45258              type strain of Hyperthermus butylicus   \n",
       "45264              type strain of Thermococcus litoralis   \n",
       "45265              type strain of Thermococcus litoralis   \n",
       "45266                type strain of Ignicoccus pacificus   \n",
       "45279            type strain of Methanofollis liminatans   \n",
       "45293               type strain of Thermofilum adornatum   \n",
       "45294               type strain of Halonotius terrestris   \n",
       "45298  reference strain of Candidatus Hadarchaeum yel...   \n",
       "45307  reference strain of Candidatus Halobonum tyrre...   \n",
       "45308                 type strain of Halococcus morrhuae   \n",
       "45309              type strain of Haloarcula californiae   \n",
       "45310              type strain of Haloarcula californiae   \n",
       "45322            type strain of Halorubrum californiense   \n",
       "\n",
       "                               binomial NRaccession organism_y  \n",
       "9                Ureaplasma urealyticum         NaN        NaN  \n",
       "10               Ureaplasma urealyticum         NaN        NaN  \n",
       "11               Ureaplasma urealyticum         NaN        NaN  \n",
       "12               Ureaplasma urealyticum         NaN        NaN  \n",
       "31                   Mycoplasma hominis         NaN        NaN  \n",
       "32                   Mycoplasma hominis         NaN        NaN  \n",
       "33                   Mycoplasma hominis         NaN        NaN  \n",
       "50     Mycobacterium numidiamassiliense         NaN        NaN  \n",
       "51     Mycobacterium numidiamassiliense         NaN        NaN  \n",
       "52       Mycobacterium rhizamassiliense         NaN        NaN  \n",
       "53       Mycobacterium rhizamassiliense         NaN        NaN  \n",
       "54       Mycobacterium rhizamassiliense         NaN        NaN  \n",
       "55       Mycobacterium terramassiliense         NaN        NaN  \n",
       "56       Mycobacterium terramassiliense         NaN        NaN  \n",
       "57       Mycobacterium terramassiliense         NaN        NaN  \n",
       "58              Mycobacterium ahvazicum         NaN        NaN  \n",
       "59              Mycobacterium ahvazicum         NaN        NaN  \n",
       "60              Mycobacterium ahvazicum         NaN        NaN  \n",
       "61              Mycobacterium ahvazicum         NaN        NaN  \n",
       "104                Nitrosomonas mobilis         NaN        NaN  \n",
       "105                Nitrosomonas mobilis         NaN        NaN  \n",
       "106                Nitrosomonas mobilis         NaN        NaN  \n",
       "163                    Hirschia baltica         NaN        NaN  \n",
       "164                    Hirschia baltica         NaN        NaN  \n",
       "219                     Thiothrix nivea         NaN        NaN  \n",
       "220                     Thiothrix nivea         NaN        NaN  \n",
       "221                     Thiothrix nivea         NaN        NaN  \n",
       "243           Geodermatophilus obscurus         NaN        NaN  \n",
       "244           Geodermatophilus obscurus         NaN        NaN  \n",
       "245           Geodermatophilus obscurus         NaN        NaN  \n",
       "...                                 ...         ...        ...  \n",
       "45058         Acidilobus saccharovorans         NaN        NaN  \n",
       "45059              Methanoregula boonei         NaN        NaN  \n",
       "45068          Halorubrum lacusprofundi         NaN        NaN  \n",
       "45069          Halorubrum lacusprofundi         NaN        NaN  \n",
       "45070            Methanococcus aeolicus         NaN        NaN  \n",
       "45089           Thermococcus onnurineus         NaN        NaN  \n",
       "45090           Halococcus hamelinensis         NaN        NaN  \n",
       "45091           Halococcus hamelinensis         NaN        NaN  \n",
       "45092           Halococcus hamelinensis         NaN        NaN  \n",
       "45105         Methanosaeta harundinacea         NaN        NaN  \n",
       "45178                Thermococcus celer         NaN        NaN  \n",
       "45179                Thermococcus celer         NaN        NaN  \n",
       "45209         Methanoculleus bourgensis         NaN        NaN  \n",
       "45219           Ferroplasma acidarmanus         NaN        NaN  \n",
       "45224             Thermococcus zilligii         NaN        NaN  \n",
       "45225         Thermococcus kodakarensis         NaN        NaN  \n",
       "45257           Thermosphaera aggregans         NaN        NaN  \n",
       "45258            Hyperthermus butylicus         NaN        NaN  \n",
       "45264            Thermococcus litoralis         NaN        NaN  \n",
       "45265            Thermococcus litoralis         NaN        NaN  \n",
       "45266              Ignicoccus pacificus         NaN        NaN  \n",
       "45279          Methanofollis liminatans         NaN        NaN  \n",
       "45293             Thermofilum adornatum         NaN        NaN  \n",
       "45294             Halonotius terrestris         NaN        NaN  \n",
       "45298            Candidatus Hadarchaeum         NaN        NaN  \n",
       "45307              Candidatus Halobonum         NaN        NaN  \n",
       "45308               Halococcus morrhuae         NaN        NaN  \n",
       "45309            Haloarcula californiae         NaN        NaN  \n",
       "45310            Haloarcula californiae         NaN        NaN  \n",
       "45322         Halorubrum californiensis         NaN        NaN  \n",
       "\n",
       "[6104 rows x 6 columns]"
      ]
     },
     "execution_count": 67,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "missing_df = combine_df[combine_df['NRaccession'].isna()]\n",
    "missing_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "metadata": {},
   "outputs": [],
   "source": [
    "missing_df.to_excel (r'C:\\Users\\mcveigh\\Documents\\PythonPC\\missing_type.xlsx', index = False, header=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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