.gitignore

.*
!/.gitignore

get_top_feats_from_server.sh
random
ArchRLogs
data/*
!data/scripts
temp
Rplots.pdf
models/
software/
figures/
tmp/
__pycache__/
.Rproj.user
*.pdf
*.rds
*.png
*.svg
*.tsv
*.gz
*.odt
*.json
*.db
*.csv
*xlsx
*bgz
build_ml_commands_non_interactive_out
tsse_filtered_run_commands
analysis/ML/*.sh
analysis/create_frag_counts_and_tss_filtered_v_R_plots.sh
analysis/ArchR_analysis/ArchR_projects/
analysis/ML/sqldb/
analysis/ML/robustness_scripts/
scATAC_dataset/
yang_pub_link.txt
yang_kidney_git_repo/data
paper/*/
analysis/ML/seed_range*
analysis/ML/cancer_types_*
analysis/ML/db.sqlite3
analysis/create_frag_counts_and_tss_filtered_v_R_plots.sh
analysis/ArchR_analysis/ArchR_projects/
analysis/ML/*.pe*
analysis/ML/*.po*
analysis/ML/*.o*
analysis/ML/*.e*
analysis/ML/postgresql_hostname.txt
analysis/ML/post_modeling_results/