barcoded_IAV

Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks Amato K, et al. 2021 https://www.biorxiv.org/content/10.1101/2021.09.28.462198v1.full.pdf

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
Amato et al 092621 Supp Table 3.csv		Amato et al 092621 Supp Table 3.csv
ONT_script.txt		ONT_script.txt
README.md		README.md
bray_curtis.py		bray_curtis.py
ferret_HA_URTgroup_lungs_barh.py		ferret_HA_URTgroup_lungs_barh.py
ferret_URTgroup_lungs_barh_PA.py		ferret_URTgroup_lungs_barh_PA.py
ferret_nasalwash_stacks_HA.py		ferret_nasalwash_stacks_HA.py
ferret_nasalwash_stacks_PA.py		ferret_nasalwash_stacks_PA.py
ferret_trachea_barh_all.py		ferret_trachea_barh_all.py
mice_pyvenn_nhe.py		mice_pyvenn_nhe.py
mice_pyvenn_pst.py		mice_pyvenn_pst.py
mice_stacked_barh_all.py		mice_stacked_barh_all.py
p1_Nhe_K153E_HA_and_PA_histogram.py		p1_Nhe_K153E_HA_and_PA_histogram.py
p1_Pst_K153E_HA_and_PA_histogram.py		p1_Pst_K153E_HA_and_PA_histogram.py
pHW2000-CA07-HA-K153E-NheI-barcode.dna		pHW2000-CA07-HA-K153E-NheI-barcode.dna
pHW2000-CA07-HA-K153E-PstI-barcode.dna		pHW2000-CA07-HA-K153E-PstI-barcode.dna
pHW2000-CA07-PASTN-barcode.dna		pHW2000-CA07-PASTN-barcode.dna
pHW2000-CA07-all-dPA-dHA.dna		pHW2000-CA07-all-dPA-dHA.dna
shannon_calc.py		shannon_calc.py
stackplots_for_skewed_flat_space.py		stackplots_for_skewed_flat_space.py

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