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mutations_search_results.html
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<!DOCTYPE html>
<html lang="en">
<head>
<!-- Meta tags for character set and responsive design -->
<meta charset="utf-8">
<title>Mutation Results - GExplore</title>
<!-- Linking CSS stylesheet -->
<link rel="stylesheet" href="style.css" type="text/css">
<!-- Favicon for the browser tab -->
<link rel="icon" href="assets/favicon.png" type="image/png">
</head>
<body id="top">
<!-- Main wrapper div -->
<div class="wrapper">
<!-- Header section -->
<div id="header">
<a href="home.html">
<img src="assets/GExplore_logo.png" alt="GExplore Logo" class="logo">
</a>
<div id="topnav">
<ul>
<li class="active"><a href="home.html"><span class="text">Home</span></a></li>
<li><a><span class="text">Search</span> <span class="angle"></span></a>
<ul class="dropdown">
<li><a href="gene_search.html">Genes</a></li>
<li><a href="mutation_search.html">Mutations</a></li>
<li><a href="protein_search.html">Proteins</a></li>
<li><a href="expression_stage_search.html">Stage Expressions</a></li>
<li><a href="expression_tissue_search.html">Tissue Expressions</a></li>
<li><a href="expression_embryo_search.html">Embryo Expressions</a></li>
</ul>
</li>
<li><a><span class="text">Tools</span> <span class="angle"></span></a>
<ul class="dropdown">
<li><a href="compare.html">Compare</a></li>
<li><a href="convert.html">Convert</a></li>
</ul>
</li>
<li><a href="help.html"><span class="text">Help</span></a></li>
<li><a href="about.html"><span class="text">About</span></a></li>
</ul>
</div>
</div>
<!-- Content section -->
<div id="content">
<!-- IMPORTANT = Perl Connection-->
<form action="display.pl" method="post" name="ge_display_form" target="_self" id="ge_display_form">
<!-- Sidebar wrapper -->
<div class="sidebar-wrapper">
<!-- Sidebar icon container -->
<div id="sidebar-icon-container" class="active">
<!-- Active line indicator -->
<div id="active-line"></div>
<!-- Icon container for sidebar items -->
<div class="icon-container" data-target="database-content">
<img id="list-icon" src="assets/database-icon.png" alt="Database Icon" class="list-icon" draggable="false">
<span class="tooltip-text">Search Results</span>
</div>
<div class="icon-container" data-target="display-options-content">
<img id="display-icon" src="assets/display-options-icon.png" alt="Display Options Icon" class="list-icon" draggable="false">
<span class="tooltip-text">Display Options</span>
</div>
<div class="icon-container" data-target="export-content">
<img id="export-icon" src="assets/export-icon.png" alt="Export Icon" class="list-icon" draggable="false">
<span class="tooltip-text">Export Data</span>
</div>
<div class="icon-container help-icon" data-target="help-content">
<img id="help-icon" src="assets/help-icon.png" alt="Help Icon" class="list-icon" draggable="false">
<span class="tooltip-text">Help</span>
</div>
</div>
<!-- Sidebar content -->
<div id="sidebar">
<!-- Database content in sidebar -->
<div id="database-content" class="sidebar-content "> <!--add class active if any issue-->
<div class="sidebar-title">
<h4>Search Results</h4>
</div>
<div id="sidebar-info">
<div class="first-content-title">
<p>Search Parameters</p>
</div>
<div class="content-info">
<p>Database: Wormbase 292</p>
<p>Gene: unc-5</p>
</div>
<div class="content-title">
<div class="list-header">
<p>Results</p>
</div>
</div>
<div class="gene-list-container">
<div class="copy-icon-row">
<div class="genes-found-info">37 mutations found</div>
<div class="copy-icon-container">
<img id="copy-icon" src="assets/copy-icon.png" alt="Copy Icon" draggable="true">
<span class="copy-tooltip-text">Copy List</span>
</div>
</div>
<div class="list-info">
<!-- List of genes found -->
<p>B0273.4c</p>
</div>
</div>
</div>
</div>
<!-- Display options content in sidebar -->
<div id="display-options-content" class="sidebar-content ">
<div class="sidebar-title">
<h4>Display Options</h4>
</div>
<div id="sidebar-info">
<div class="first-content-title">
<p>Add/Remove Columns</p>
</div>
<div class="column-filter-container">
<div class="display-option-form">
<!-- Checkbox options for display columns -->
<label><input name="locus_display" type="checkbox" id="locus_display" /> Gene Name</label>
<label><input name="uniprot_display" type="checkbox" id="uniprot_display" /> UniProt ID</label>
<label><input name="nt_display" type="checkbox" id="nt_display" /> Nucleotide Position</label>
</div>
</div>
<div class="display-filter-container">
<div class="content-title">
<p>Protein Domain or Sequence</p>
</div>
<div class="display-option-form">
<!-- Checkbox options for display columns -->
<label><input type="radio" name="domain_display" value="domains" id="show_domains" checked="checked"/> Show protein domains</label>
<label><input type="radio" name="domain_display" value="sequence" id="show_sequence"/> Show protein sequence</label>
</div>
</div>
<div class="display-filter-container">
<div class="content-title">
<p>Display Features</p>
</div>
<div class="display-option-form">
<p>Wrap after <input type="number" name="domain_wrap" id="domain_wrap"> domains.</p>
<p>Show gaps > <input type="number" name="aaThres" id="aaThres"> amino acids.</p>
<h5>Show only mutations in this domain:</h5>
<textarea name="mut_domains" id="mut_domains" placeholder="Enter a domain. Separate each additional domain with a comma."></textarea>
</div>
</div>
</div>
<!-- Update display button -->
<div class="button-container">
<button type="submit" class="update-display-btn">Update Display</button>
</div>
</div>
<!-- Export content in sidebar -->
<div id="export-content" class="sidebar-content">
<div class="sidebar-title">
<h4>Export Data</h4>
</div>
<div id="sidebar-info">
<div class="first-content-title">
<p>Select Export Format</p>
</div>
<div class="export-option-container">
<form class="export-option-form">
<div class="export-buttons">
<button type="button" id="export-csv-button">Export as CSV</button>
<button type="button" id="export-txt-button">Export as TXT</button>
</div>
</form>
</div>
</div>
</div>
<!-- Help content in sidebar -->
<div id="help-content" class="sidebar-content">
<div class="sidebar-title">
<h4>Help</h4>
</div>
<div id="sidebar-info">
<div class="help-content-container">
<p>Click on the active Icon to hide the sidebar.</p>
<p>Click a column header to sort the table: <br/>
<span style="color: #1976D2;">▲</span> The column is sorted in ascending order (A-Z or 0-9).<br/>
<span style="color: #1976D2;">▼</span> The column is sorted in descending order (Z-A or 9-0).
</p>
<p>Uncheck a box in the table and then click 'Update Display' to remove a gene from the list.</p>
<p>Drag a column header to rearrange columns.</p>
<p>When the domain organization of the proteins is shown, you can drag rows to rearrange the table.</p>
</div>
</div>
<!-- Help button linking to help.html#display-options -->
<div class="help-button-container">
<a href="help.html#display-options" target="_blank" class="help-button">View Display Options Guide</a>
</div>
</div>
</div>
</div>
<!-- Main content area -->
<div id="main-content">
<div class="table-container">
<div id="scrollableTable" class="scroll-unlocked">
<table id="results" class="sortable result_table">
<!-- Table headers -->
<thead>
<tr class="sticky">
<!--
Expanded th element setup example (this is used for sorting arrows):
<th class="gene_col sticky sortable">
Gene
<span class="sort-icons">
<i class="arrow-up"></i>
<i class="arrow-down"></i>
</span>
</th>
-->
<th class="checkbox_col sorttable_nosort"></th>
<th class="gene_col sortable">Protein<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="gene_col sticky sortable">Gene<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="uniprot_col sortable">UniProt ID<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="gene_col sortable">Allele<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="gene_col sortable">Type<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="nuc_pos_col sortable">Nucleotide Position<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="protsize_col sortable">Size aa<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
<th class="sorttable_nosort pic_col">Domain Organization<span class="sort-icons"><i class="arrow-up"></i><i class="arrow-down"></i></span></th>
</tr>
</thead>
<!-- Table body with data rows -->
<tbody id="result_tbody">
<tr>
<td class ="checkbox_col"> <input type="checkbox" id="4170" name="4170" checked="checked"/></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/gene?name=B0273.4c;class=Protein" target="_blank">B0273.4c</a></td>
<td class ="gene_co sticky"><a href="http://www.wormbase.org/db/gene/gene?name=unc-5;class=Gene" target="_blank">unc-5</a></td>
<td class ="uniprot_col"><a href="http://www.uniprot.org/uniprot/Q26261" target="_blank">Q26261</a></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/variation?name=gk928440;class=Variation" target="_blank">gk928440</a></td>
<td class ="type_col">R138W</td>
<td class ="nuc_pos_col"><a href="https://wormbase.org/tools/genome/jbrowse2/index.html?assembly=c_elegans_PRJNA13758&loc=X%3A5500935..5502935&tracks=c_elegans_PRJNA13758_curated_genes%2Cc_elegans_PRJNA13758_classical_alleles%2Cc_elegans_PRJNA13758_change-of-function_alleles" target="_blank"> 5,501,935</a></td>
<td class ="protsize_col">947</td>
<td class ="pic_col"><img src="assets/display_prototype/4170.png" usemap="#B0273.4c" border="0">
<map Name="B0273.4c">
<area shape="rect" coords="57,22,109,42" title="IG" href="help.html#IG" target="_blank">
<area shape="rect" coords="109,22,161,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="161,22,213,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="213,22,265,42" title="TM" href="help.html#TM" target="_blank">
<area shape="rect" coords="317,22,369,42" title="ZU5" href="help.html#ZU5" target="_blank">
<area shape="rect" coords="421,22,473,42" title="PF17217" href="http://pfam.xfam.org/family/PF17217" target="_blank">
<area shape="rect" coords="473,22,525,42" title="Death" href="help.html#Death" target="_blank">
</map>
</td>
</tr>
<tr>
<td class ="checkbox_col"> <input type="checkbox" id="4145" name="4145" checked="checked"/></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/gene?name=B0273.4c;class=Protein" target="_blank">B0273.4c</a></td>
<td class ="gene_col sticky"><a href="http://www.wormbase.org/db/gene/gene?name=unc-5;class=Gene" target="_blank">unc-5</a></td>
<td class ="uniprot_col"><a href="http://www.uniprot.org/uniprot/Q26261" target="_blank">Q26261</a></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/variation?name=e791;class=Variation" target="_blank">e791</a></td>
<td class ="type_col">Q346*</td>
<td class ="nuc_pos_col"><a href="https://wormbase.org/tools/genome/jbrowse2/index.html?assembly=c_elegans_PRJNA13758&loc=X%3A5498156..5500156&tracks=c_elegans_PRJNA13758_curated_genes%2Cc_elegans_PRJNA13758_classical_alleles%2Cc_elegans_PRJNA13758_change-of-function_alleles" target="_blank"> 5,499,156</a></td>
<td class ="protsize_col">947</td>
<td class ="pic_col"><img src="assets/display_prototype/4145.png" usemap="#B0273.4c" border="0">
<map Name="B0273.4c">
<area shape="rect" coords="57,22,109,42" title="IG" href="help.html#IG" target="_blank">
<area shape="rect" coords="109,22,161,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="161,22,213,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="213,22,265,42" title="TM" href="help.html#TM" target="_blank">
<area shape="rect" coords="317,22,369,42" title="ZU5" href="help.html#ZU5" target="_blank">
<area shape="rect" coords="421,22,473,42" title="PF17217" href="http://pfam.xfam.org/family/PF17217" target="_blank">
<area shape="rect" coords="473,22,525,42" title="Death" href="help.html#Death" target="_blank">
</map>
</td>
</tr>
<tr>
<td class ="checkbox_col"> <input type="checkbox" id="4174" name="4174" checked="checked"/></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/gene?name=B0273.4c;class=Protein" target="_blank">B0273.4c</a></td>
<td class ="gene_col sticky"><a href="http://www.wormbase.org/db/gene/gene?name=unc-5;class=Gene" target="_blank">unc-5</a></td>
<td class ="uniprot_col"><a href="http://www.uniprot.org/uniprot/Q26261" target="_blank">Q26261</a></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/variation?name=op460;class=Variation" target="_blank">op460</a></td>
<td class ="type_col">C53Y</td>
<td class ="nuc_pos_col"><a href="https://wormbase.org/tools/genome/jbrowse2/index.html?assembly=c_elegans_PRJNA13758&loc=X%3A5515190..5517190&tracks=c_elegans_PRJNA13758_curated_genes%2Cc_elegans_PRJNA13758_classical_alleles%2Cc_elegans_PRJNA13758_change-of-function_alleles" target="_blank"> 5,516,190</a></td>
<td class ="protsize_col">947</td>
<td class ="pic_col"><img src="assets/display_prototype/4174.png" usemap="#B0273.4c" border="0">
<map Name="B0273.4c">
<area shape="rect" coords="57,22,109,42" title="IG" href="help.html#IG" target="_blank">
<area shape="rect" coords="109,22,161,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="161,22,213,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="213,22,265,42" title="TM" href="help.html#TM" target="_blank">
<area shape="rect" coords="317,22,369,42" title="ZU5" href="help.html#ZU5" target="_blank">
<area shape="rect" coords="421,22,473,42" title="PF17217" href="http://pfam.xfam.org/family/PF17217" target="_blank">
<area shape="rect" coords="473,22,525,42" title="Death" href="help.html#Death" target="_blank">
</map>
</td>
</tr>
<tr>
<td class ="checkbox_col"> <input type="checkbox" id="4157" name="4157" checked="checked"/></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/gene?name=B0273.4c;class=Protein" target="_blank">B0273.4c</a></td>
<td class ="gene_col sticky"><a href="http://www.wormbase.org/db/gene/gene?name=unc-5;class=Gene" target="_blank">unc-5</a></td>
<td class ="uniprot_col"><a href="http://www.uniprot.org/uniprot/Q26261" target="_blank">Q26261</a></td>
<td class ="gene_col"><a href="http://www.wormbase.org/db/gene/variation?name=gk537571;class=Variation" target="_blank">gk537571</a></td>
<td class ="type_col">A58V</td>
<td class ="nuc_pos_col"><a href="https://wormbase.org/tools/genome/jbrowse2/index.html?assembly=c_elegans_PRJNA13758&loc=X%3A5515175..5517175&tracks=c_elegans_PRJNA13758_curated_genes%2Cc_elegans_PRJNA13758_classical_alleles%2Cc_elegans_PRJNA13758_change-of-function_alleles" target="_blank"> 5,516,175</a></td>
<td class ="protsize_col">947</td>
<td class ="pic_col"><img src="assets/display_prototype/4157.png" usemap="#B0273.4c" border="0">
<map Name="B0273.4c">
<area shape="rect" coords="57,22,109,42" title="IG" href="help.html#IG" target="_blank">
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<area shape="rect" coords="161,22,213,42" title="T1" href="help.html#T1" target="_blank">
<area shape="rect" coords="213,22,265,42" title="TM" href="help.html#TM" target="_blank">
<area shape="rect" coords="317,22,369,42" title="ZU5" href="help.html#ZU5" target="_blank">
<area shape="rect" coords="421,22,473,42" title="PF17217" href="http://pfam.xfam.org/family/PF17217" target="_blank">
<area shape="rect" coords="473,22,525,42" title="Death" href="help.html#Death" target="_blank">
</map>
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</form>
</div>
</div>
<!-- JavaScript file -->
<script src="script.js"></script>
<script src="javascript/sortable_feature.js"></script>
<script src="javascript/tablednd.js"></script>
<script type="text/javascript">
var table = document.getElementById('results');
var tableDnD = new TableDnD();
tableDnD.init(table);
</script>
<!--
Important Note:
Order Matters: The order of <script> tags is crucial. The array files must be loaded first, so when autosuggest.js is loaded, it can access these arrays.
-->
<!-- Include the array files first so they are available as global variables -->
<script src="javascript/autosuggest_list_domains.js"></script>
<!-- Include the autosuggest.js file that uses these arrays -->
<script src="javascript/autosuggest.js"></script>
</body>
</html>