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<a href="adios2stream_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment">// at the Lawrence Livermore National Laboratory. All Rights reserved. See files</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment">// LICENSE and NOTICE for details. LLNL-CODE-806117.</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment">//</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment">// This file is part of the MFEM library. For more information and source code</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment">// availability visit https://mfem.org.</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment">//</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment">// MFEM is free software; you can redistribute it and/or modify it under the</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment">// terms of the BSD-3 license. We welcome feedback and contributions, see file</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment">// CONTRIBUTING.md for details.</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment">//</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment">// Created on: Jan 22, 2019</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment">// Author: William F Godoy [email protected]</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment">// adios2: Adaptable Input/Output System https://github.com/ornladios/ADIOS2</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="preprocessor">#include "<a class="code" href="adios2stream_8hpp.html">adios2stream.hpp</a>"</span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> </div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#ifdef MFEM_USE_ADIOS2</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include "<a class="code" href="geom_8hpp.html">../fem/geom.hpp</a>"</span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include "<a class="code" href="array_8hpp.html">../general/array.hpp</a>"</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include "<a class="code" href="element_8hpp.html">../mesh/element.hpp</a>"</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include "<a class="code" href="mesh_8hpp.html">../mesh/mesh.hpp</a>"</span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include "<a class="code" href="gridfunc_8hpp.html">../fem/gridfunc.hpp</a>"</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span><span class="preprocessor">#include <algorithm></span></div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacemfem.html">mfem</a></div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span>{</div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span><span class="keyword">namespace</span></div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span>{</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span><span class="comment">// these functions might be included in adios2 upstream next release</span></div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="keyword">template</span> <<span class="keyword">class</span> T></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>adios2::Variable<T> SafeDefineVariable(adios2::IO io,</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">const</span> std::string& variable_name,</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">const</span> adios2::Dims& shape = adios2::Dims(),</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">const</span> adios2::Dims& start = adios2::Dims(),</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">const</span> adios2::Dims& count = adios2::Dims())</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span>{</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> adios2::Variable<T> variable = io.InquireVariable<T>(variable_name);</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keywordflow">if</span> (variable)</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> {</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keywordflow">if</span> (variable.Count() != count &&</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> variable.ShapeID() == adios2::ShapeID::LocalArray)</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> {</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> variable.SetSelection({start, count});</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> }</div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> }</div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> {</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> variable = io.DefineVariable<T>(variable_name, shape, start, count);</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> }</div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> <span class="keywordflow">return</span> variable;</div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span>}</div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span><span class="keyword">template</span> <<span class="keyword">class</span> T></div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span>adios2::Attribute<T> SafeDefineAttribute(adios2::IO io,</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <span class="keyword">const</span> std::string& attribute_name,</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <span class="keyword">const</span> T& value,</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> <span class="keyword">const</span> std::string& variable_name = <span class="stringliteral">""</span>,</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">const</span> std::string separator = <span class="stringliteral">"/"</span>)</div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span>{</div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> adios2::Attribute<T> attribute = io.InquireAttribute<T>(attribute_name);</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> <span class="keywordflow">if</span> (attribute)</div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> {</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> <span class="keywordflow">return</span> attribute;</div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> }</div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keywordflow">return</span> io.DefineAttribute<T>(attribute_name, value, variable_name, separator );</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span>}</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span><span class="keyword">template</span> <<span class="keyword">class</span> T></div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span>adios2::Attribute<T> SafeDefineAttribute(adios2::IO io,</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">const</span> std::string& attribute_name,</div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> <span class="keyword">const</span> T* values, <span class="keyword">const</span> <span class="keywordtype">size_t</span> size,</div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> <span class="keyword">const</span> std::string& variable_name = <span class="stringliteral">""</span>,</div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <span class="keyword">const</span> std::string separator = <span class="stringliteral">"/"</span>)</div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span>{</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> adios2::Attribute<T> attribute = io.InquireAttribute<T>(attribute_name);</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keywordflow">if</span> (attribute)</div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> {</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> <span class="keywordflow">return</span> attribute;</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> }</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keywordflow">return</span> io.DefineAttribute<T>(attribute_name, values, size, variable_name,</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> separator );</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span>}</div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span><span class="keywordtype">bool</span> SetBoolParameter(<span class="keyword">const</span> std::string key,</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> <span class="keyword">const</span> std::map<std::string, std::string>& parameters,</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> <span class="keyword">const</span> <span class="keywordtype">bool</span> default_value) <span class="keyword">noexcept</span></div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span>{</div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keyword">auto</span> it = parameters.find(key);</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> <span class="keywordflow">if</span> (it != parameters.end())</div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> {</div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> std::string value = it->second;</div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> std::transform(value.begin(), value.end(), value.begin(), ::tolower);</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="keywordflow">if</span> (value == <span class="stringliteral">"on"</span> || value == <span class="stringliteral">"true"</span>)</div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> {</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> }</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span> ( value == <span class="stringliteral">"off"</span> || value == <span class="stringliteral">"false"</span>)</div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> {</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> }</div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> }</div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> <span class="keywordflow">return</span> default_value;</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span>}</div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span>} <span class="comment">//end empty namespace</span></div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span><span class="comment">// PUBLIC</span></div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span><span class="preprocessor">#ifdef MFEM_USE_MPI</span></div>
<div class="foldopen" id="foldopen00114" data-start="{" data-end="}">
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a894ad5a7afa33ccd11cd853b299288aa"> 114</a></span><a class="code hl_function" href="classmfem_1_1adios2stream.html#a894ad5a7afa33ccd11cd853b299288aa">adios2stream::adios2stream</a>(<span class="keyword">const</span> std::string& name, <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dc">openmode</a> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mode</a>,</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> MPI_Comm comm, <span class="keyword">const</span> std::string engineType)</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> : name(name),</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> adios2_openmode(<a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mode</a>),</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> adios(new adios2::ADIOS(comm)),</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> io(adios->DeclareIO(name))</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span>{</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> io.SetEngine(engineType);</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span>}</div>
</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span><span class="preprocessor">#else</span></div>
<div class="foldopen" id="foldopen00124" data-start="{" data-end="}">
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#ac7505b0f69e737a26748fcce76d8abc3"> 124</a></span><a class="code hl_function" href="classmfem_1_1adios2stream.html#a894ad5a7afa33ccd11cd853b299288aa">adios2stream::adios2stream</a>(<span class="keyword">const</span> std::string& name, <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dc">openmode</a> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mode</a>,</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <span class="keyword">const</span> std::string engineType)</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> : name(name),</div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> adios2_openmode(<a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mode</a>),</div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> adios(new adios2::ADIOS()),</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> io(adios->DeclareIO(name))</div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span>{</div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> io.SetEngine(engineType);</div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span>}</div>
</div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span><span class="preprocessor">#endif</span></div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> </div>
<div class="foldopen" id="foldopen00135" data-start="{" data-end="}">
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a21c1849f644d3658d57cea0fdd4b20a2"> 135</a></span><a class="code hl_function" href="classmfem_1_1adios2stream.html#a21c1849f644d3658d57cea0fdd4b20a2">adios2stream::~adios2stream</a>()</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span>{</div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <span class="keywordflow">if</span> (engine)</div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> {</div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"vtk.xml"</span>, VTKSchema() );</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> engine.Close();</div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> }</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span>}</div>
</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="foldopen" id="foldopen00144" data-start="{" data-end="}">
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a65c2c7207971c4963111c7473e4363a5"> 144</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a65c2c7207971c4963111c7473e4363a5">adios2stream::SetParameters</a>(</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> <span class="keyword">const</span> std::map<std::string, std::string>& parameters)</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span>{</div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> io.SetParameters(parameters);</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> refine = SetBoolParameter(<span class="stringliteral">"RefinedData"</span>, parameters, <span class="keyword">true</span>);</div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span>}</div>
</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> </div>
<div class="foldopen" id="foldopen00151" data-start="{" data-end="}">
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a5227bf585267f195bdaa9bc577a90a88"> 151</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a5227bf585267f195bdaa9bc577a90a88">adios2stream::SetParameter</a>(<span class="keyword">const</span> std::string key,</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> <span class="keyword">const</span> std::string value) <span class="keyword">noexcept</span></div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span>{</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> io.SetParameter(key, value);</div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> <span class="keywordflow">if</span> (key == <span class="stringliteral">"RefinedData"</span>)</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> {</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> refine = SetBoolParameter(<span class="stringliteral">"RefinedData"</span>, io.Parameters(), <span class="keyword">true</span>);</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> }</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span>}</div>
</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="foldopen" id="foldopen00161" data-start="{" data-end="}">
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#ababbc4b04db7fc2c332f76466d5b87f6"> 161</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#ababbc4b04db7fc2c332f76466d5b87f6">adios2stream::BeginStep</a>()</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span>{</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <span class="keywordflow">if</span> (!engine)</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> {</div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> engine = io.Open(name, adios2::Mode::Write);</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> }</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> engine.BeginStep();</div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> active_step = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span>}</div>
</div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> </div>
<div class="foldopen" id="foldopen00171" data-start="{" data-end="}">
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#ab02f265fbb570d672eab34f4eb2c52df"> 171</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#ab02f265fbb570d672eab34f4eb2c52df">adios2stream::EndStep</a>()</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span>{</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keywordflow">if</span> (!engine || !active_step)</div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> {</div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> <span class="keyword">const</span> std::string message = <span class="stringliteral">"MFEM adios2stream error: calling EndStep "</span></div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> <span class="stringliteral">"on uninitialized step (need BeginStep)"</span>;</div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> <a class="code hl_function" href="namespacemfem.html#a2a32aaca3e6d73a0dc6ca11de559c7e0">mfem_error</a>(message.c_str());</div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> }</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"vtk.xml"</span>, VTKSchema() );</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> engine.EndStep();</div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> active_step = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span>}</div>
</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> </div>
<div class="foldopen" id="foldopen00185" data-start="{" data-end="}">
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a63bb54c8aa16df819b7414f703506c72"> 185</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a63bb54c8aa16df819b7414f703506c72">adios2stream::SetTime</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> time)</div>
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span>{</div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> adios2::Variable<double> var_time = SafeDefineVariable<double>(io, <span class="stringliteral">"TIME"</span>);</div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> engine.Put(var_time, time);</div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> transient = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span>}</div>
</div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> </div>
<div class="foldopen" id="foldopen00192" data-start="{" data-end="}">
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a2bf783ba906eae41243a63f5b23d6654"> 192</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a2bf783ba906eae41243a63f5b23d6654">adios2stream::SetCycle</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> cycle)</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span>{</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> adios2::Variable<int> var_cycle = SafeDefineVariable<int>(io,<span class="stringliteral">"CYCLE"</span>);</div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> engine.Put(var_cycle, cycle);</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span>}</div>
</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="foldopen" id="foldopen00198" data-start="{" data-end="}">
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#ad35656fb518dcbd13b156e7024af3c18"> 198</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#ad35656fb518dcbd13b156e7024af3c18">adios2stream::SetRefinementLevel</a>(<span class="keyword">const</span> <span class="keywordtype">int</span> level) <span class="keyword">noexcept</span></div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span>{</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> refinement_level = level;</div>
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span>}</div>
</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> </div>
<div class="foldopen" id="foldopen00203" data-start="{" data-end="}">
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a9b1f8d84dcdb0e390b7ec95b823b053e"> 203</a></span><span class="keywordtype">size_t</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a9b1f8d84dcdb0e390b7ec95b823b053e">adios2stream::CurrentStep</a>()<span class="keyword"> const</span></div>
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span><span class="keyword"></span>{</div>
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <span class="keywordflow">return</span> engine.CurrentStep();</div>
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span>}</div>
</div>
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> </div>
<div class="foldopen" id="foldopen00208" data-start="{" data-end="}">
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#af8d44ce684b1e273d6f3a9d54fbbde63"> 208</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#af8d44ce684b1e273d6f3a9d54fbbde63">adios2stream::Close</a>()</div>
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span>{</div>
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> <span class="keywordflow">if</span> (engine)</div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> {</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> <span class="keywordflow">if</span> (!active_step)</div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> {</div>
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"vtk.xml"</span>, VTKSchema() );</div>
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> }</div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> engine.Close();</div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> }</div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <span class="keywordflow">if</span> (adios)</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> {</div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> adios.reset();</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> }</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span>}</div>
</div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> </div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span><span class="comment">// PROTECTED (accessible by friend class Mesh)</span></div>
<div class="foldopen" id="foldopen00226" data-start="{" data-end="}">
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#a670240a485a6fbda7c5349956da060ea"> 226</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#a670240a485a6fbda7c5349956da060ea">adios2stream::Print</a>(<span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a>& mesh, <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mode</a> print_mode)</div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span>{</div>
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <span class="keyword">auto</span> lf_DefineMeshMetadata = [<span class="keyword">this</span>](<a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a>& mesh)</div>
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> {</div>
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> <span class="comment">// check types are constant</span></div>
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> <span class="keywordflow">if</span> (!IsConstantElementType(mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>))</div>
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> {</div>
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> <span class="keywordflow">throw</span> std::invalid_argument(<span class="stringliteral">"MFEM::adios2stream ERROR: non-constant "</span></div>
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <span class="stringliteral">" element types not yet implemented\n"</span>);</div>
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> }</div>
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> </div>
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> <span class="comment">// format info</span></div>
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"format"</span>, <span class="stringliteral">"MFEM ADIOS2 BP v0.2"</span> );</div>
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"format/version"</span>, <span class="stringliteral">"0.2"</span> );</div>
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> std::string mesh_type = <span class="stringliteral">"Unknown"</span>;</div>
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> std::vector<std::string> viz_tools;</div>
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> viz_tools.reserve(2); <span class="comment">//for now</span></div>
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> <span class="keywordflow">if</span> (mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#a1995b5687a77992652d76edc04149e36">NURBSext</a>)</div>
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> {</div>
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> mesh_type = <span class="stringliteral">"MFEM NURBS"</span>;</div>
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> viz_tools.push_back(<span class="stringliteral">"NONE"</span>);</div>
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> }</div>
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span> (mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#accf0f0075e05fbd2e8086f81027f5b38">ncmesh</a>)</div>
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> {</div>
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> mesh_type = <span class="stringliteral">"MFEM mesh v1.1"</span>;</div>
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> viz_tools.push_back(<span class="stringliteral">"NONE"</span>);</div>
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> }</div>
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> {</div>
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> mesh_type = <span class="stringliteral">"MFEM mesh v1.0"</span>;</div>
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> viz_tools.push_back(<span class="stringliteral">"Paraview: ADIOS2VTXReader"</span>);</div>
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> viz_tools.push_back(<span class="stringliteral">"VTK: vtkADIOS2VTXReader.h"</span>);</div>
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> }</div>
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> </div>
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"format/mfem_mesh"</span>, mesh_type );</div>
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"format/viz_tools"</span>, viz_tools.data(),</div>
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> viz_tools.size() );</div>
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> </div>
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> <span class="comment">// elements</span></div>
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> <span class="keyword">const</span> uint32_t <a class="code hl_variable" href="hooke_8cpp.html#ae611171a484067e6df0d837b40416e3c">dimension</a> = <span class="keyword">static_cast<</span>int32_t<span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a6875d857942c66cb8cea1159337b807a">Dimension</a>());</div>
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> SafeDefineAttribute<uint32_t>(io, <span class="stringliteral">"dimension"</span>, <a class="code hl_variable" href="hooke_8cpp.html#ae611171a484067e6df0d837b40416e3c">dimension</a>);</div>
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> SafeDefineVariable<uint32_t>(io,<span class="stringliteral">"NumOfElements"</span>, {adios2::LocalValueDim});</div>
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> SafeDefineVariable<uint32_t>(io, <span class="stringliteral">"types"</span>);</div>
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keywordtype">size_t</span> nelements = 0;</div>
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="keywordtype">size_t</span> element_nvertices = 0;</div>
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> <span class="keywordtype">size_t</span> nvertices = 0;</div>
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keywordflow">if</span> (refine)</div>
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> {</div>
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>(); ++i)</div>
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> {</div>
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805">Geometry::Type</a> type = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">GetElementBaseGeometry</a>(i);</div>
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <a class="code hl_class" href="classmfem_1_1RefinedGeometry.html">RefinedGeometry</a>* refined_geometry = <a class="code hl_variable" href="namespacemfem.html#a3697bdaae6ecb0512523be42d34f468a">GlobGeometryRefiner</a>.<a class="code hl_function" href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">Refine</a>(type,</div>
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> refinement_level, 1);</div>
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> <span class="keywordflow">if</span> (refined_geometry == <span class="keyword">nullptr</span>)</div>
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> {</div>
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <a class="code hl_function" href="namespacemfem.html#a2a32aaca3e6d73a0dc6ca11de559c7e0">mfem_error</a>(<span class="stringliteral">"ERROR: could not refine geometry in call to Save with adios2stream \n"</span>);</div>
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> }</div>
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> </div>
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> </div>
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> element_nvertices = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(<a class="code hl_variable" href="namespacemfem.html#a4310501b6df5bda8f82fc045015b40a8">Geometries</a>.<a class="code hl_function" href="classmfem_1_1Geometry.html#a558ff9380d5660ef9f500faeb89ed536">GetVertices</a>(</div>
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> type)-><a class="code hl_function" href="classmfem_1_1IntegrationRule.html#a65a041b5cd5417664446932fa946409d">GetNPoints</a>());</div>
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> nelements += refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a4b2d00bf63fc89732a277670859845fa">RefGeoms</a>.<a class="code hl_function" href="classmfem_1_1Array.html#a5efef8b3cd9f7f35f89bb8330e76d120">Size</a>() / element_nvertices;</div>
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> nvertices += refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">RefPts</a>.<a class="code hl_function" href="classmfem_1_1IntegrationRule.html#a65a041b5cd5417664446932fa946409d">GetNPoints</a>();</div>
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> }</div>
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> </div>
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> refined_mesh_nelements = nelements;</div>
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> refined_mesh_nvertices = nvertices;</div>
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> }</div>
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> {</div>
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> nelements = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>());</div>
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> element_nvertices = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>[0]->GetNVertices());</div>
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> }</div>
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> SafeDefineVariable<uint64_t>(io, <span class="stringliteral">"connectivity"</span>, {}, {}, {nelements, element_nvertices+1});</div>
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> SafeDefineVariable<int32_t>(io, <span class="stringliteral">"attribute"</span>, {}, {}, {nelements});</div>
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> <span class="comment">// vertices</span></div>
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> SafeDefineVariable<uint32_t>(io,<span class="stringliteral">"NumOfVertices"</span>, {adios2::LocalValueDim});</div>
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> <span class="keywordflow">if</span> (refine)</div>
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> {</div>
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> SafeDefineVariable<double>( io, <span class="stringliteral">"vertices"</span>, {}, {}, {nvertices, <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(<a class="code hl_variable" href="hooke_8cpp.html#ae611171a484067e6df0d837b40416e3c">dimension</a>)});</div>
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> }</div>
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> {</div>
<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1GridFunction.html">GridFunction</a>* grid_function = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a9a0fa5f0dbca754e36437b13ae6b158f">GetNodes</a>();</div>
<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> <span class="keywordflow">if</span> (grid_function == <span class="keyword">nullptr</span>)</div>
<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> {</div>
<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> nVertices = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aa54d3303834de5d84f2ab3ea41dc3385">GetNV</a>());</div>
<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> spaceDim = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a8b7a6459b9c4ef0bada3ef9e00dcf082">SpaceDimension</a>());</div>
<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> <span class="comment">// similar to Ordering::byVDIM</span></div>
<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> SafeDefineVariable<double>( io, <span class="stringliteral">"vertices"</span>, {}, {}, {nVertices, spaceDim});</div>
<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> }</div>
<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"> 319</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> {</div>
<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> size = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(grid_function-><a class="code hl_function" href="classmfem_1_1Vector.html#aa9c5be6e53d0993d5851c276ba2a6079">Size</a>());</div>
<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1FiniteElementSpace.html">FiniteElementSpace</a>* fes = grid_function-><a class="code hl_function" href="classmfem_1_1GridFunction.html#a6ba31d8990675c594e8ee75a2be18f29">FESpace</a>();</div>
<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> components = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ad27a4b8249411b018f03b3319bed9276">GetVDim</a>());</div>
<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> tuples = size /components;</div>
<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span> SafeDefineVariable<double>(io, <span class="stringliteral">"vertices"</span>, {}, {}, {tuples, components} );</div>
<div class="line"><a id="l00326" name="l00326"></a><span class="lineno"> 326</span> </div>
<div class="line"><a id="l00327" name="l00327"></a><span class="lineno"> 327</span> <span class="keywordflow">if</span> (fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#a6ea7e53fd19088193d6847257a7abd95">GetOrdering</a>() == <a class="code hl_enumvalue" href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818cac173477ff6eb53486121ad718ecd5f03">Ordering::byNODES</a>)</div>
<div class="line"><a id="l00328" name="l00328"></a><span class="lineno"> 328</span> {</div>
<div class="line"><a id="l00329" name="l00329"></a><span class="lineno"> 329</span> ordering_by_node = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"> 330</span> }</div>
<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> }</div>
<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> }</div>
<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> };</div>
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> </div>
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> <span class="keyword">auto</span> lf_PrintRefinedMeshData = [<span class="keyword">this</span>](<a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a>& mesh)</div>
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> {</div>
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> <span class="comment">// elements and vertices</span></div>
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> engine.Put(<span class="stringliteral">"NumOfElements"</span>, <span class="keyword">static_cast<</span>uint32_t<span class="keyword">></span>(refined_mesh_nelements));</div>
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> engine.Put(<span class="stringliteral">"NumOfVertices"</span>, <span class="keyword">static_cast<</span>uint32_t<span class="keyword">></span>(refined_mesh_nvertices));</div>
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> </div>
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <span class="keyword">const</span> uint32_t vtkType =</div>
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> GLVISToVTKType(<span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>[0]->GetGeometryType()));</div>
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> engine.Put(<span class="stringliteral">"types"</span>, vtkType);</div>
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> </div>
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> adios2::Variable<double> var_vertices = io.InquireVariable<<span class="keywordtype">double</span>>(<span class="stringliteral">"vertices"</span>);</div>
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> adios2::Variable<double>::Span span_vertices = engine.Put<<span class="keywordtype">double</span>>(var_vertices);</div>
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> </div>
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> adios2::Variable<uint64_t> var_connectivity =</div>
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> io.InquireVariable<uint64_t>(<span class="stringliteral">"connectivity"</span>);</div>
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"> 350</span> adios2::Variable<uint64_t>::Span span_connectivity = engine.Put<uint64_t></div>
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> (var_connectivity);</div>
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> </div>
<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> adios2::Variable<int32_t> var_element_attribute =</div>
<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> io.InquireVariable<int32_t>(<span class="stringliteral">"attribute"</span>);</div>
<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"> 355</span> adios2::Variable<int32_t>::Span span_element_attribute = engine.Put<int32_t></div>
<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> (var_element_attribute);</div>
<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> </div>
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> <span class="keywordtype">size_t</span> span_vertices_offset = 0;</div>
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> <span class="keywordtype">size_t</span> span_connectivity_offset = 0;</div>
<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> <span class="keywordtype">size_t</span> span_element_attribute_offset = 0;</div>
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> <span class="comment">// use for setting absolute node id for each element</span></div>
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span> <span class="keywordtype">size_t</span> point_id = 0;</div>
<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> <a class="code hl_class" href="classmfem_1_1DenseMatrix.html">DenseMatrix</a> pmatrix;</div>
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> </div>
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"> 365</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 0; e < mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>(); ++e)</div>
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> {</div>
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805">Geometry::Type</a> type = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">GetElementBaseGeometry</a>(e);</div>
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> <a class="code hl_class" href="classmfem_1_1RefinedGeometry.html">RefinedGeometry</a>* refined_geometry = <a class="code hl_variable" href="namespacemfem.html#a3697bdaae6ecb0512523be42d34f468a">GlobGeometryRefiner</a>.<a class="code hl_function" href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">Refine</a>(type,</div>
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"> 369</span> refinement_level, 1);</div>
<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"> 370</span> <span class="comment">// vertices</span></div>
<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a7f725f1a2d70b63d9340eaac577b75dc">GetElementTransformation</a>(e)->Transform(refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">RefPts</a>, pmatrix);</div>
<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"> 372</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < pmatrix.<a class="code hl_function" href="classmfem_1_1Operator.html#a8d6d09abcca8b7523d28c61e97ee9a15">Width</a>(); ++i)</div>
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"> 373</span> {</div>
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j < pmatrix.<a class="code hl_function" href="classmfem_1_1Operator.html#a59261632e2ae121003fa5bac1852aa2c">Height</a>(); ++j)</div>
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"> 375</span> {</div>
<div class="line"><a id="l00376" name="l00376"></a><span class="lineno"> 376</span> span_vertices[span_vertices_offset + i*pmatrix.<a class="code hl_function" href="classmfem_1_1Operator.html#a59261632e2ae121003fa5bac1852aa2c">Height</a>() + j] = pmatrix(j, i);</div>
<div class="line"><a id="l00377" name="l00377"></a><span class="lineno"> 377</span> }</div>
<div class="line"><a id="l00378" name="l00378"></a><span class="lineno"> 378</span> }</div>
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"> 379</span> span_vertices_offset += <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(pmatrix.<a class="code hl_function" href="classmfem_1_1Operator.html#a8d6d09abcca8b7523d28c61e97ee9a15">Width</a>()*pmatrix.<a class="code hl_function" href="classmfem_1_1Operator.html#a59261632e2ae121003fa5bac1852aa2c">Height</a>());</div>
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> </div>
<div class="line"><a id="l00381" name="l00381"></a><span class="lineno"> 381</span> <span class="comment">// element attribute</span></div>
<div class="line"><a id="l00382" name="l00382"></a><span class="lineno"> 382</span> <span class="keyword">const</span> <span class="keywordtype">int</span> element_attribute = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a2883f6489c821ed509ce84e74b919b54">GetAttribute</a>(e);</div>
<div class="line"><a id="l00383" name="l00383"></a><span class="lineno"> 383</span> </div>
<div class="line"><a id="l00384" name="l00384"></a><span class="lineno"> 384</span> <span class="comment">// connectivity</span></div>
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> <span class="keyword">const</span> <span class="keywordtype">int</span> nv = <a class="code hl_variable" href="namespacemfem.html#a4310501b6df5bda8f82fc045015b40a8">Geometries</a>.<a class="code hl_function" href="classmfem_1_1Geometry.html#a558ff9380d5660ef9f500faeb89ed536">GetVertices</a>(type)-><a class="code hl_function" href="classmfem_1_1IntegrationRule.html#a65a041b5cd5417664446932fa946409d">GetNPoints</a>();</div>
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1Array.html">Array<int></a> &element_vertices = refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a4b2d00bf63fc89732a277670859845fa">RefGeoms</a>;</div>
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> </div>
<div class="line"><a id="l00388" name="l00388"></a><span class="lineno"> 388</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> v = 0; v < element_vertices.<a class="code hl_function" href="classmfem_1_1Array.html#a5efef8b3cd9f7f35f89bb8330e76d120">Size</a>();)</div>
<div class="line"><a id="l00389" name="l00389"></a><span class="lineno"> 389</span> {</div>
<div class="line"><a id="l00390" name="l00390"></a><span class="lineno"> 390</span> span_connectivity[span_connectivity_offset] = <span class="keyword">static_cast<</span>uint64_t<span class="keyword">></span>(nv);</div>
<div class="line"><a id="l00391" name="l00391"></a><span class="lineno"> 391</span> ++span_connectivity_offset;</div>
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> </div>
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span> span_element_attribute[span_element_attribute_offset] = <span class="keyword">static_cast<</span>int32_t<span class="keyword">></span></div>
<div class="line"><a id="l00394" name="l00394"></a><span class="lineno"> 394</span> (element_attribute);</div>
<div class="line"><a id="l00395" name="l00395"></a><span class="lineno"> 395</span> ++span_element_attribute_offset;</div>
<div class="line"><a id="l00396" name="l00396"></a><span class="lineno"> 396</span> </div>
<div class="line"><a id="l00397" name="l00397"></a><span class="lineno"> 397</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k =0; k < nv; k++, v++ )</div>
<div class="line"><a id="l00398" name="l00398"></a><span class="lineno"> 398</span> {</div>
<div class="line"><a id="l00399" name="l00399"></a><span class="lineno"> 399</span> span_connectivity[span_connectivity_offset] = <span class="keyword">static_cast<</span>uint64_t<span class="keyword">></span></div>
<div class="line"><a id="l00400" name="l00400"></a><span class="lineno"> 400</span> (point_id + element_vertices[v]);</div>
<div class="line"><a id="l00401" name="l00401"></a><span class="lineno"> 401</span> ++span_connectivity_offset;</div>
<div class="line"><a id="l00402" name="l00402"></a><span class="lineno"> 402</span> }</div>
<div class="line"><a id="l00403" name="l00403"></a><span class="lineno"> 403</span> }</div>
<div class="line"><a id="l00404" name="l00404"></a><span class="lineno"> 404</span> </div>
<div class="line"><a id="l00405" name="l00405"></a><span class="lineno"> 405</span> point_id += <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">RefPts</a>.<a class="code hl_function" href="classmfem_1_1IntegrationRule.html#a65a041b5cd5417664446932fa946409d">GetNPoints</a>());</div>
<div class="line"><a id="l00406" name="l00406"></a><span class="lineno"> 406</span> }</div>
<div class="line"><a id="l00407" name="l00407"></a><span class="lineno"> 407</span> </div>
<div class="line"><a id="l00408" name="l00408"></a><span class="lineno"> 408</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 0; e < mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>(); ++e)</div>
<div class="line"><a id="l00409" name="l00409"></a><span class="lineno"> 409</span> {</div>
<div class="line"><a id="l00410" name="l00410"></a><span class="lineno"> 410</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805">Geometry::Type</a> type = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">GetElementBaseGeometry</a>(e);</div>
<div class="line"><a id="l00411" name="l00411"></a><span class="lineno"> 411</span> <a class="code hl_class" href="classmfem_1_1RefinedGeometry.html">RefinedGeometry</a>* refined_geometry = <a class="code hl_variable" href="namespacemfem.html#a3697bdaae6ecb0512523be42d34f468a">GlobGeometryRefiner</a>.<a class="code hl_function" href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">Refine</a>(type,</div>
<div class="line"><a id="l00412" name="l00412"></a><span class="lineno"> 412</span> refinement_level, 1);</div>
<div class="line"><a id="l00413" name="l00413"></a><span class="lineno"> 413</span> }</div>
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"> 414</span> };</div>
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span> </div>
<div class="line"><a id="l00416" name="l00416"></a><span class="lineno"> 416</span> <span class="keyword">auto</span> lf_PrintMeshData = [&](<a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a>& mesh)</div>
<div class="line"><a id="l00417" name="l00417"></a><span class="lineno"> 417</span> {</div>
<div class="line"><a id="l00418" name="l00418"></a><span class="lineno"> 418</span> <span class="keywordflow">if</span> (refine)</div>
<div class="line"><a id="l00419" name="l00419"></a><span class="lineno"> 419</span> {</div>
<div class="line"><a id="l00420" name="l00420"></a><span class="lineno"> 420</span> lf_PrintRefinedMeshData(mesh);</div>
<div class="line"><a id="l00421" name="l00421"></a><span class="lineno"> 421</span> <span class="keywordflow">return</span>;</div>
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"> 422</span> }</div>
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span> </div>
<div class="line"><a id="l00424" name="l00424"></a><span class="lineno"> 424</span> <span class="comment">// elements</span></div>
<div class="line"><a id="l00425" name="l00425"></a><span class="lineno"> 425</span> engine.Put(<span class="stringliteral">"NumOfElements"</span>, <span class="keyword">static_cast<</span>uint32_t<span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>()));</div>
<div class="line"><a id="l00426" name="l00426"></a><span class="lineno"> 426</span> </div>
<div class="line"><a id="l00427" name="l00427"></a><span class="lineno"> 427</span> <span class="keyword">const</span> uint32_t vtkType =</div>
<div class="line"><a id="l00428" name="l00428"></a><span class="lineno"> 428</span> GLVISToVTKType(<span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>[0]->GetGeometryType()));</div>
<div class="line"><a id="l00429" name="l00429"></a><span class="lineno"> 429</span> engine.Put(<span class="stringliteral">"types"</span>, vtkType);</div>
<div class="line"><a id="l00430" name="l00430"></a><span class="lineno"> 430</span> </div>
<div class="line"><a id="l00431" name="l00431"></a><span class="lineno"> 431</span> adios2::Variable<uint64_t> varConnectivity =</div>
<div class="line"><a id="l00432" name="l00432"></a><span class="lineno"> 432</span> io.InquireVariable<uint64_t>(<span class="stringliteral">"connectivity"</span>);</div>
<div class="line"><a id="l00433" name="l00433"></a><span class="lineno"> 433</span> <span class="comment">// zero-copy access to adios2 buffer to put non-contiguous to contiguous memory</span></div>
<div class="line"><a id="l00434" name="l00434"></a><span class="lineno"> 434</span> adios2::Variable<uint64_t>::Span spanConnectivity =</div>
<div class="line"><a id="l00435" name="l00435"></a><span class="lineno"> 435</span> engine.Put<uint64_t>(varConnectivity);</div>
<div class="line"><a id="l00436" name="l00436"></a><span class="lineno"> 436</span> </div>
<div class="line"><a id="l00437" name="l00437"></a><span class="lineno"> 437</span> adios2::Variable<int32_t> varElementAttribute =</div>
<div class="line"><a id="l00438" name="l00438"></a><span class="lineno"> 438</span> io.InquireVariable<int32_t>(<span class="stringliteral">"attribute"</span>);</div>
<div class="line"><a id="l00439" name="l00439"></a><span class="lineno"> 439</span> <span class="comment">// zero-copy access to adios2 buffer to put non-contiguous to contiguous memory</span></div>
<div class="line"><a id="l00440" name="l00440"></a><span class="lineno"> 440</span> adios2::Variable<int32_t>::Span spanElementAttribute =</div>
<div class="line"><a id="l00441" name="l00441"></a><span class="lineno"> 441</span> engine.Put<int32_t>(varElementAttribute);</div>
<div class="line"><a id="l00442" name="l00442"></a><span class="lineno"> 442</span> </div>
<div class="line"><a id="l00443" name="l00443"></a><span class="lineno"> 443</span> <span class="keywordtype">size_t</span> elementPosition = 0;</div>
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"> 444</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 0; e < mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>(); ++e)</div>
<div class="line"><a id="l00445" name="l00445"></a><span class="lineno"> 445</span> {</div>
<div class="line"><a id="l00446" name="l00446"></a><span class="lineno"> 446</span> spanElementAttribute[e] = <span class="keyword">static_cast<</span>int32_t<span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a2883f6489c821ed509ce84e74b919b54">GetAttribute</a>(e));</div>
<div class="line"><a id="l00447" name="l00447"></a><span class="lineno"> 447</span> </div>
<div class="line"><a id="l00448" name="l00448"></a><span class="lineno"> 448</span> <span class="keyword">const</span> <span class="keywordtype">int</span> nVertices = mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>[e]->GetNVertices();</div>
<div class="line"><a id="l00449" name="l00449"></a><span class="lineno"> 449</span> spanConnectivity[elementPosition] = nVertices;</div>
<div class="line"><a id="l00450" name="l00450"></a><span class="lineno"> 450</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> v = 0; v < nVertices; ++v)</div>
<div class="line"><a id="l00451" name="l00451"></a><span class="lineno"> 451</span> {</div>
<div class="line"><a id="l00452" name="l00452"></a><span class="lineno"> 452</span> spanConnectivity[elementPosition + v + 1] =</div>
<div class="line"><a id="l00453" name="l00453"></a><span class="lineno"> 453</span> mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">elements</a>[e]->GetVertices()[v];</div>
<div class="line"><a id="l00454" name="l00454"></a><span class="lineno"> 454</span> }</div>
<div class="line"><a id="l00455" name="l00455"></a><span class="lineno"> 455</span> elementPosition += nVertices + 1;</div>
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"> 456</span> }</div>
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span> </div>
<div class="line"><a id="l00458" name="l00458"></a><span class="lineno"> 458</span> <span class="comment">// vertices</span></div>
<div class="line"><a id="l00459" name="l00459"></a><span class="lineno"> 459</span> engine.Put(<span class="stringliteral">"NumOfVertices"</span>, <span class="keyword">static_cast<</span>uint32_t<span class="keyword">></span>(mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aa54d3303834de5d84f2ab3ea41dc3385">GetNV</a>()));</div>
<div class="line"><a id="l00460" name="l00460"></a><span class="lineno"> 460</span> </div>
<div class="line"><a id="l00461" name="l00461"></a><span class="lineno"> 461</span> <span class="keywordflow">if</span> (mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a9a0fa5f0dbca754e36437b13ae6b158f">GetNodes</a>() == <span class="keyword">nullptr</span>)</div>
<div class="line"><a id="l00462" name="l00462"></a><span class="lineno"> 462</span> {</div>
<div class="line"><a id="l00463" name="l00463"></a><span class="lineno"> 463</span> adios2::Variable<double> varVertices = io.InquireVariable<<span class="keywordtype">double</span>>(<span class="stringliteral">"vertices"</span>);</div>
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"> 464</span> <span class="comment">// zero-copy access to adios2 buffer to put non-contiguous to contiguous memory</span></div>
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span> adios2::Variable<double>::Span spanVertices = engine.Put(varVertices);</div>
<div class="line"><a id="l00466" name="l00466"></a><span class="lineno"> 466</span> </div>
<div class="line"><a id="l00467" name="l00467"></a><span class="lineno"> 467</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> v = 0; v < mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#aa54d3303834de5d84f2ab3ea41dc3385">GetNV</a>(); ++v)</div>
<div class="line"><a id="l00468" name="l00468"></a><span class="lineno"> 468</span> {</div>
<div class="line"><a id="l00469" name="l00469"></a><span class="lineno"> 469</span> <span class="keyword">const</span> <span class="keywordtype">int</span> space_dim = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a8b7a6459b9c4ef0bada3ef9e00dcf082">SpaceDimension</a>();</div>
<div class="line"><a id="l00470" name="l00470"></a><span class="lineno"> 470</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> coord = 0; coord < space_dim; ++coord)</div>
<div class="line"><a id="l00471" name="l00471"></a><span class="lineno"> 471</span> {</div>
<div class="line"><a id="l00472" name="l00472"></a><span class="lineno"> 472</span> spanVertices[v * space_dim + coord] = mesh.<a class="code hl_variable" href="classmfem_1_1Mesh.html#a004c7eff16b8b8a5e4a2a055dbe1eef2">vertices</a>[v](coord);</div>
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span> }</div>
<div class="line"><a id="l00474" name="l00474"></a><span class="lineno"> 474</span> }</div>
<div class="line"><a id="l00475" name="l00475"></a><span class="lineno"> 475</span> }</div>
<div class="line"><a id="l00476" name="l00476"></a><span class="lineno"> 476</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00477" name="l00477"></a><span class="lineno"> 477</span> {</div>
<div class="line"><a id="l00478" name="l00478"></a><span class="lineno"> 478</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1GridFunction.html">GridFunction</a>* grid_function = mesh.<a class="code hl_function" href="classmfem_1_1Mesh.html#a9a0fa5f0dbca754e36437b13ae6b158f">GetNodes</a>();</div>
<div class="line"><a id="l00479" name="l00479"></a><span class="lineno"> 479</span> <span class="keywordflow">if</span> (ordering_by_node)</div>
<div class="line"><a id="l00480" name="l00480"></a><span class="lineno"> 480</span> {</div>
<div class="line"><a id="l00481" name="l00481"></a><span class="lineno"> 481</span> adios2::Variable<double> varVertices = io.InquireVariable<<span class="keywordtype">double</span>>(<span class="stringliteral">"vertices"</span>);</div>
<div class="line"><a id="l00482" name="l00482"></a><span class="lineno"> 482</span> <span class="comment">// zero-copy access to adios2 buffer to put non-contiguous to contiguous memory</span></div>
<div class="line"><a id="l00483" name="l00483"></a><span class="lineno"> 483</span> adios2::Variable<double>::Span spanVertices = engine.Put(varVertices);</div>
<div class="line"><a id="l00484" name="l00484"></a><span class="lineno"> 484</span> </div>
<div class="line"><a id="l00485" name="l00485"></a><span class="lineno"> 485</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> size = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(grid_function-><a class="code hl_function" href="classmfem_1_1Vector.html#aa9c5be6e53d0993d5851c276ba2a6079">Size</a>());</div>
<div class="line"><a id="l00486" name="l00486"></a><span class="lineno"> 486</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1FiniteElementSpace.html">FiniteElementSpace</a>* fes = grid_function-><a class="code hl_function" href="classmfem_1_1GridFunction.html#a6ba31d8990675c594e8ee75a2be18f29">FESpace</a>();</div>
<div class="line"><a id="l00487" name="l00487"></a><span class="lineno"> 487</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> components = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ad27a4b8249411b018f03b3319bed9276">GetVDim</a>());</div>
<div class="line"><a id="l00488" name="l00488"></a><span class="lineno"> 488</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> tuples = size /components;</div>
<div class="line"><a id="l00489" name="l00489"></a><span class="lineno"> 489</span> </div>
<div class="line"><a id="l00490" name="l00490"></a><span class="lineno"> 490</span> <span class="keyword">const</span> <span class="keywordtype">double</span>* data = grid_function-><a class="code hl_function" href="classmfem_1_1Vector.html#ad3b95940dbc35584167bc142b1969db1">GetData</a>();</div>
<div class="line"><a id="l00491" name="l00491"></a><span class="lineno"> 491</span> </div>
<div class="line"><a id="l00492" name="l00492"></a><span class="lineno"> 492</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < tuples; ++i)</div>
<div class="line"><a id="l00493" name="l00493"></a><span class="lineno"> 493</span> {</div>
<div class="line"><a id="l00494" name="l00494"></a><span class="lineno"> 494</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> j = 0; j < components; ++j)</div>
<div class="line"><a id="l00495" name="l00495"></a><span class="lineno"> 495</span> {</div>
<div class="line"><a id="l00496" name="l00496"></a><span class="lineno"> 496</span> spanVertices[i*components + j] = data[j*tuples + i];</div>
<div class="line"><a id="l00497" name="l00497"></a><span class="lineno"> 497</span> }</div>
<div class="line"><a id="l00498" name="l00498"></a><span class="lineno"> 498</span> }</div>
<div class="line"><a id="l00499" name="l00499"></a><span class="lineno"> 499</span> }</div>
<div class="line"><a id="l00500" name="l00500"></a><span class="lineno"> 500</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00501" name="l00501"></a><span class="lineno"> 501</span> {</div>
<div class="line"><a id="l00502" name="l00502"></a><span class="lineno"> 502</span> grid_function-><a class="code hl_function" href="classmfem_1_1Vector.html#a3d2b3e40a087dfdec6d1743e77e1da3f">Print</a>(*<span class="keyword">this</span>, <span class="stringliteral">"vertices"</span>);</div>
<div class="line"><a id="l00503" name="l00503"></a><span class="lineno"> 503</span> }</div>
<div class="line"><a id="l00504" name="l00504"></a><span class="lineno"> 504</span> }</div>
<div class="line"><a id="l00505" name="l00505"></a><span class="lineno"> 505</span> };</div>
<div class="line"><a id="l00506" name="l00506"></a><span class="lineno"> 506</span> </div>
<div class="line"><a id="l00507" name="l00507"></a><span class="lineno"> 507</span> <span class="comment">// BODY OF FUNCTION STARTS HERE</span></div>
<div class="line"><a id="l00508" name="l00508"></a><span class="lineno"> 508</span> <span class="keywordflow">try</span></div>
<div class="line"><a id="l00509" name="l00509"></a><span class="lineno"> 509</span> {</div>
<div class="line"><a id="l00510" name="l00510"></a><span class="lineno"> 510</span> <a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a> ref_mesh(mesh);</div>
<div class="line"><a id="l00511" name="l00511"></a><span class="lineno"> 511</span> lf_DefineMeshMetadata(ref_mesh);</div>
<div class="line"><a id="l00512" name="l00512"></a><span class="lineno"> 512</span> </div>
<div class="line"><a id="l00513" name="l00513"></a><span class="lineno"> 513</span> <span class="keywordflow">if</span> (!engine) <span class="comment">// if Engine is closed</span></div>
<div class="line"><a id="l00514" name="l00514"></a><span class="lineno"> 514</span> {</div>
<div class="line"><a id="l00515" name="l00515"></a><span class="lineno"> 515</span> engine = io.Open(name, adios2::Mode::Write);</div>
<div class="line"><a id="l00516" name="l00516"></a><span class="lineno"> 516</span> }</div>
<div class="line"><a id="l00517" name="l00517"></a><span class="lineno"> 517</span> </div>
<div class="line"><a id="l00518" name="l00518"></a><span class="lineno"> 518</span> lf_PrintMeshData(ref_mesh);</div>
<div class="line"><a id="l00519" name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a id="l00520" name="l00520"></a><span class="lineno"> 520</span> <span class="keywordflow">if</span> (print_mode == <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0a63ad9d34f3503826e5f649ae6b7ac92c">mode::sync</a>)</div>
<div class="line"><a id="l00521" name="l00521"></a><span class="lineno"> 521</span> {</div>
<div class="line"><a id="l00522" name="l00522"></a><span class="lineno"> 522</span> engine.PerformPuts();</div>
<div class="line"><a id="l00523" name="l00523"></a><span class="lineno"> 523</span> }</div>
<div class="line"><a id="l00524" name="l00524"></a><span class="lineno"> 524</span> }</div>
<div class="line"><a id="l00525" name="l00525"></a><span class="lineno"> 525</span> <span class="keywordflow">catch</span> (std::exception& e)</div>
<div class="line"><a id="l00526" name="l00526"></a><span class="lineno"> 526</span> {</div>
<div class="line"><a id="l00527" name="l00527"></a><span class="lineno"> 527</span> <span class="keyword">const</span> std::string warning =</div>
<div class="line"><a id="l00528" name="l00528"></a><span class="lineno"> 528</span> <span class="stringliteral">"MFEM: adios2stream exception caught, invalid bp dataset: "</span> + name +</div>
<div class="line"><a id="l00529" name="l00529"></a><span class="lineno"> 529</span> <span class="stringliteral">","</span> + e.what();</div>
<div class="line"><a id="l00530" name="l00530"></a><span class="lineno"> 530</span> <a class="code hl_function" href="namespacemfem.html#a3ffb119c003c814bc8e4b54e43e52787">mfem_warning</a>( warning.c_str());</div>
<div class="line"><a id="l00531" name="l00531"></a><span class="lineno"> 531</span> }</div>
<div class="line"><a id="l00532" name="l00532"></a><span class="lineno"> 532</span>}</div>
</div>
<div class="line"><a id="l00533" name="l00533"></a><span class="lineno"> 533</span> </div>
<div class="foldopen" id="foldopen00534" data-start="{" data-end="}">
<div class="line"><a id="l00534" name="l00534"></a><span class="lineno"><a class="line" href="classmfem_1_1adios2stream.html#aa4ddc51c5562059675139a0d9ef2ea6e"> 534</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classmfem_1_1adios2stream.html#aa4ddc51c5562059675139a0d9ef2ea6e">adios2stream::Save</a>(<span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1GridFunction.html">GridFunction</a>& grid_function,</div>
<div class="line"><a id="l00535" name="l00535"></a><span class="lineno"> 535</span> <span class="keyword">const</span> std::string& variable_name, <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7">data_type</a> type)</div>
<div class="line"><a id="l00536" name="l00536"></a><span class="lineno"> 536</span>{</div>
<div class="line"><a id="l00537" name="l00537"></a><span class="lineno"> 537</span> <span class="keyword">auto</span> lf_SafeDefine = [&](<span class="keyword">const</span> std::string& variable_name,</div>
<div class="line"><a id="l00538" name="l00538"></a><span class="lineno"> 538</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> tuples, <span class="keyword">const</span> <span class="keywordtype">size_t</span> components,</div>
<div class="line"><a id="l00539" name="l00539"></a><span class="lineno"> 539</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818c">Ordering::Type</a> ordering,</div>
<div class="line"><a id="l00540" name="l00540"></a><span class="lineno"> 540</span> <span class="keyword">const</span> std::string& fespace_name)</div>
<div class="line"><a id="l00541" name="l00541"></a><span class="lineno"> 541</span> {</div>
<div class="line"><a id="l00542" name="l00542"></a><span class="lineno"> 542</span> adios2::Variable<double> var = io.InquireVariable<<span class="keywordtype">double</span>>(variable_name);</div>
<div class="line"><a id="l00543" name="l00543"></a><span class="lineno"> 543</span> <span class="keywordflow">if</span> (!var)</div>
<div class="line"><a id="l00544" name="l00544"></a><span class="lineno"> 544</span> {</div>
<div class="line"><a id="l00545" name="l00545"></a><span class="lineno"> 545</span> <span class="keywordflow">if</span> (components == 1 && type == <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7a87b63755d9dd3aba31248ba7f8c04152">adios2stream::data_type::point_data</a>)</div>
<div class="line"><a id="l00546" name="l00546"></a><span class="lineno"> 546</span> {</div>
<div class="line"><a id="l00547" name="l00547"></a><span class="lineno"> 547</span> io.DefineVariable<<span class="keywordtype">double</span>>(variable_name, {}, {}, {tuples*components});</div>
<div class="line"><a id="l00548" name="l00548"></a><span class="lineno"> 548</span> }</div>
<div class="line"><a id="l00549" name="l00549"></a><span class="lineno"> 549</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00550" name="l00550"></a><span class="lineno"> 550</span> {</div>
<div class="line"><a id="l00551" name="l00551"></a><span class="lineno"> 551</span> <span class="keyword">const</span> adios2::Dims count = (ordering == <a class="code hl_enumvalue" href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818cac173477ff6eb53486121ad718ecd5f03">Ordering::byNODES</a>) ?</div>
<div class="line"><a id="l00552" name="l00552"></a><span class="lineno"> 552</span> adios2::Dims{components, tuples} :</div>
<div class="line"><a id="l00553" name="l00553"></a><span class="lineno"> 553</span> adios2::Dims{tuples, components};</div>
<div class="line"><a id="l00554" name="l00554"></a><span class="lineno"> 554</span> io.DefineVariable<<span class="keywordtype">double</span>>(variable_name, {}, {}, count);</div>
<div class="line"><a id="l00555" name="l00555"></a><span class="lineno"> 555</span> }</div>
<div class="line"><a id="l00556" name="l00556"></a><span class="lineno"> 556</span> SafeDefineAttribute<std::string>(io, <span class="stringliteral">"FiniteElementSpace"</span>,</div>
<div class="line"><a id="l00557" name="l00557"></a><span class="lineno"> 557</span> fespace_name, variable_name);</div>
<div class="line"><a id="l00558" name="l00558"></a><span class="lineno"> 558</span> </div>
<div class="line"><a id="l00559" name="l00559"></a><span class="lineno"> 559</span> }</div>
<div class="line"><a id="l00560" name="l00560"></a><span class="lineno"> 560</span> };</div>
<div class="line"><a id="l00561" name="l00561"></a><span class="lineno"> 561</span> </div>
<div class="line"><a id="l00562" name="l00562"></a><span class="lineno"> 562</span> <span class="comment">// BODY OF FUNCTION STARTS HERE</span></div>
<div class="line"><a id="l00563" name="l00563"></a><span class="lineno"> 563</span> <span class="keyword">const</span> std::map<std::string, std::string> parameters = io.Parameters();</div>
<div class="line"><a id="l00564" name="l00564"></a><span class="lineno"> 564</span> <span class="keyword">const</span> <span class="keywordtype">bool</span> full_data = SetBoolParameter(<span class="stringliteral">"FullData"</span>, parameters, <span class="keyword">false</span>);</div>
<div class="line"><a id="l00565" name="l00565"></a><span class="lineno"> 565</span> </div>
<div class="line"><a id="l00566" name="l00566"></a><span class="lineno"> 566</span> <span class="keywordflow">if</span> (!full_data && !refine)</div>
<div class="line"><a id="l00567" name="l00567"></a><span class="lineno"> 567</span> {</div>
<div class="line"><a id="l00568" name="l00568"></a><span class="lineno"> 568</span> <span class="keywordflow">return</span>;</div>
<div class="line"><a id="l00569" name="l00569"></a><span class="lineno"> 569</span> }</div>
<div class="line"><a id="l00570" name="l00570"></a><span class="lineno"> 570</span> </div>
<div class="line"><a id="l00571" name="l00571"></a><span class="lineno"> 571</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1FiniteElementSpace.html">FiniteElementSpace</a>* fes = grid_function.<a class="code hl_function" href="classmfem_1_1GridFunction.html#a6ba31d8990675c594e8ee75a2be18f29">FESpace</a>();</div>
<div class="line"><a id="l00572" name="l00572"></a><span class="lineno"> 572</span> </div>
<div class="line"><a id="l00573" name="l00573"></a><span class="lineno"> 573</span> <span class="keywordflow">if</span> (refine)</div>
<div class="line"><a id="l00574" name="l00574"></a><span class="lineno"> 574</span> {</div>
<div class="line"><a id="l00575" name="l00575"></a><span class="lineno"> 575</span> <span class="keyword">const</span> <a class="code hl_class" href="classmfem_1_1Mesh.html">Mesh</a> *mesh = fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ac6d02d2d7116e03055937cc05b71574f">GetMesh</a>();</div>
<div class="line"><a id="l00576" name="l00576"></a><span class="lineno"> 576</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> components = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(grid_function.<a class="code hl_function" href="classmfem_1_1GridFunction.html#aa21a7180e052dcf313589381fd10355a">VectorDim</a>());</div>
<div class="line"><a id="l00577" name="l00577"></a><span class="lineno"> 577</span> <span class="comment">// const size_t tuples = static_cast<size_t>(mesh->GetNV());</span></div>
<div class="line"><a id="l00578" name="l00578"></a><span class="lineno"> 578</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> tuples = refined_mesh_nvertices;</div>
<div class="line"><a id="l00579" name="l00579"></a><span class="lineno"> 579</span> </div>
<div class="line"><a id="l00580" name="l00580"></a><span class="lineno"> 580</span> lf_SafeDefine(variable_name, tuples, components,</div>
<div class="line"><a id="l00581" name="l00581"></a><span class="lineno"> 581</span> <a class="code hl_enumvalue" href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818ca144c090b834bdc63082b3e959fb0f93f">Ordering::byVDIM</a>, std::string(fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ac5d1bf44188ba66cf68090eebd976bb4">FEColl</a>()-><a class="code hl_function" href="classmfem_1_1FiniteElementCollection.html#a8655364bde3b708590655b456adf5ba8">Name</a>()));</div>
<div class="line"><a id="l00582" name="l00582"></a><span class="lineno"> 582</span> <span class="keywordflow">if</span> (type == <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7a87b63755d9dd3aba31248ba7f8c04152">adios2stream::data_type::point_data</a>)</div>
<div class="line"><a id="l00583" name="l00583"></a><span class="lineno"> 583</span> {</div>
<div class="line"><a id="l00584" name="l00584"></a><span class="lineno"> 584</span> point_data_variables.insert(variable_name);</div>
<div class="line"><a id="l00585" name="l00585"></a><span class="lineno"> 585</span> }</div>
<div class="line"><a id="l00586" name="l00586"></a><span class="lineno"> 586</span> </div>
<div class="line"><a id="l00587" name="l00587"></a><span class="lineno"> 587</span> <a class="code hl_class" href="classmfem_1_1RefinedGeometry.html">RefinedGeometry</a>* refined_geometry;</div>
<div class="line"><a id="l00588" name="l00588"></a><span class="lineno"> 588</span> <a class="code hl_class" href="classmfem_1_1DenseMatrix.html">DenseMatrix</a> transform;</div>
<div class="line"><a id="l00589" name="l00589"></a><span class="lineno"> 589</span> </div>
<div class="line"><a id="l00590" name="l00590"></a><span class="lineno"> 590</span> <span class="comment">// zero-copy access to adios2 buffer to put non-contiguous to contiguous memory</span></div>
<div class="line"><a id="l00591" name="l00591"></a><span class="lineno"> 591</span> adios2::Variable<double> variable = io.InquireVariable<<span class="keywordtype">double</span>>(variable_name);</div>
<div class="line"><a id="l00592" name="l00592"></a><span class="lineno"> 592</span> adios2::Variable<double>::Span span = engine.Put<<span class="keywordtype">double</span>>(variable);</div>
<div class="line"><a id="l00593" name="l00593"></a><span class="lineno"> 593</span> </div>
<div class="line"><a id="l00594" name="l00594"></a><span class="lineno"> 594</span> <span class="keywordtype">size_t</span> offset = 0;</div>
<div class="line"><a id="l00595" name="l00595"></a><span class="lineno"> 595</span> <span class="keywordflow">if</span> (components == 1)</div>
<div class="line"><a id="l00596" name="l00596"></a><span class="lineno"> 596</span> {</div>
<div class="line"><a id="l00597" name="l00597"></a><span class="lineno"> 597</span> <a class="code hl_class" href="classmfem_1_1Vector.html">Vector</a> scalar;</div>
<div class="line"><a id="l00598" name="l00598"></a><span class="lineno"> 598</span> </div>
<div class="line"><a id="l00599" name="l00599"></a><span class="lineno"> 599</span> <span class="keyword">const</span> <span class="keywordtype">int</span> nelements = mesh-><a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>();</div>
<div class="line"><a id="l00600" name="l00600"></a><span class="lineno"> 600</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 0; e < nelements; ++e)</div>
<div class="line"><a id="l00601" name="l00601"></a><span class="lineno"> 601</span> {</div>
<div class="line"><a id="l00602" name="l00602"></a><span class="lineno"> 602</span> refined_geometry = <a class="code hl_variable" href="namespacemfem.html#a3697bdaae6ecb0512523be42d34f468a">GlobGeometryRefiner</a>.<a class="code hl_function" href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">Refine</a>(</div>
<div class="line"><a id="l00603" name="l00603"></a><span class="lineno"> 603</span> mesh-><a class="code hl_function" href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">GetElementBaseGeometry</a>(e), refinement_level, 1);</div>
<div class="line"><a id="l00604" name="l00604"></a><span class="lineno"> 604</span> </div>
<div class="line"><a id="l00605" name="l00605"></a><span class="lineno"> 605</span> grid_function.<a class="code hl_function" href="classmfem_1_1GridFunction.html#a12557ab48919b8d3c1cb8892ce17d85d">GetValues</a>(e, refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">RefPts</a>, scalar, transform);</div>
<div class="line"><a id="l00606" name="l00606"></a><span class="lineno"> 606</span> </div>
<div class="line"><a id="l00607" name="l00607"></a><span class="lineno"> 607</span> <span class="keyword">const</span> <span class="keywordtype">int</span> size = scalar.<a class="code hl_function" href="classmfem_1_1Vector.html#aa9c5be6e53d0993d5851c276ba2a6079">Size</a>();</div>
<div class="line"><a id="l00608" name="l00608"></a><span class="lineno"> 608</span> </div>
<div class="line"><a id="l00609" name="l00609"></a><span class="lineno"> 609</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < size; ++i)</div>
<div class="line"><a id="l00610" name="l00610"></a><span class="lineno"> 610</span> {</div>
<div class="line"><a id="l00611" name="l00611"></a><span class="lineno"> 611</span> <span class="keyword">const</span> <span class="keywordtype">double</span> value = scalar(i);</div>
<div class="line"><a id="l00612" name="l00612"></a><span class="lineno"> 612</span> span.at(offset+i) = value;</div>
<div class="line"><a id="l00613" name="l00613"></a><span class="lineno"> 613</span> }</div>
<div class="line"><a id="l00614" name="l00614"></a><span class="lineno"> 614</span> offset += <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(size);</div>
<div class="line"><a id="l00615" name="l00615"></a><span class="lineno"> 615</span> }</div>
<div class="line"><a id="l00616" name="l00616"></a><span class="lineno"> 616</span> }</div>
<div class="line"><a id="l00617" name="l00617"></a><span class="lineno"> 617</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00618" name="l00618"></a><span class="lineno"> 618</span> {</div>
<div class="line"><a id="l00619" name="l00619"></a><span class="lineno"> 619</span> <a class="code hl_class" href="classmfem_1_1DenseMatrix.html">DenseMatrix</a> vector;</div>
<div class="line"><a id="l00620" name="l00620"></a><span class="lineno"> 620</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 0; e < mesh-><a class="code hl_function" href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">GetNE</a>(); ++e)</div>
<div class="line"><a id="l00621" name="l00621"></a><span class="lineno"> 621</span> {</div>
<div class="line"><a id="l00622" name="l00622"></a><span class="lineno"> 622</span> refined_geometry = <a class="code hl_variable" href="namespacemfem.html#a3697bdaae6ecb0512523be42d34f468a">GlobGeometryRefiner</a>.<a class="code hl_function" href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">Refine</a>(</div>
<div class="line"><a id="l00623" name="l00623"></a><span class="lineno"> 623</span> mesh-><a class="code hl_function" href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">GetElementBaseGeometry</a>(e), refinement_level, 1);</div>
<div class="line"><a id="l00624" name="l00624"></a><span class="lineno"> 624</span> grid_function.<a class="code hl_function" href="classmfem_1_1GridFunction.html#af29be245d92e79eb31bb1e7dc733db3b">GetVectorValues</a>(e, refined_geometry-><a class="code hl_variable" href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">RefPts</a>, vector, transform);</div>
<div class="line"><a id="l00625" name="l00625"></a><span class="lineno"> 625</span> </div>
<div class="line"><a id="l00626" name="l00626"></a><span class="lineno"> 626</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < vector.Width(); ++i)</div>
<div class="line"><a id="l00627" name="l00627"></a><span class="lineno"> 627</span> {</div>
<div class="line"><a id="l00628" name="l00628"></a><span class="lineno"> 628</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j < vector.Height(); ++j)</div>
<div class="line"><a id="l00629" name="l00629"></a><span class="lineno"> 629</span> {</div>
<div class="line"><a id="l00630" name="l00630"></a><span class="lineno"> 630</span> span[offset + i*vector.Height() + j] = vector(j, i);</div>
<div class="line"><a id="l00631" name="l00631"></a><span class="lineno"> 631</span> }</div>
<div class="line"><a id="l00632" name="l00632"></a><span class="lineno"> 632</span> }</div>
<div class="line"><a id="l00633" name="l00633"></a><span class="lineno"> 633</span> offset += <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(vector.Width()*vector.Height());</div>
<div class="line"><a id="l00634" name="l00634"></a><span class="lineno"> 634</span> }</div>
<div class="line"><a id="l00635" name="l00635"></a><span class="lineno"> 635</span> }</div>
<div class="line"><a id="l00636" name="l00636"></a><span class="lineno"> 636</span> }</div>
<div class="line"><a id="l00637" name="l00637"></a><span class="lineno"> 637</span> </div>
<div class="line"><a id="l00638" name="l00638"></a><span class="lineno"> 638</span> <span class="keywordflow">if</span> (full_data)</div>
<div class="line"><a id="l00639" name="l00639"></a><span class="lineno"> 639</span> {</div>
<div class="line"><a id="l00640" name="l00640"></a><span class="lineno"> 640</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> size = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(grid_function.<a class="code hl_function" href="classmfem_1_1Vector.html#aa9c5be6e53d0993d5851c276ba2a6079">Size</a>());</div>
<div class="line"><a id="l00641" name="l00641"></a><span class="lineno"> 641</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> components = <span class="keyword">static_cast<</span><span class="keywordtype">size_t</span><span class="keyword">></span>(fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ad27a4b8249411b018f03b3319bed9276">GetVDim</a>());</div>
<div class="line"><a id="l00642" name="l00642"></a><span class="lineno"> 642</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> tuples = size /components;</div>
<div class="line"><a id="l00643" name="l00643"></a><span class="lineno"> 643</span> lf_SafeDefine(variable_name +<span class="stringliteral">"/full"</span>, tuples, components,</div>
<div class="line"><a id="l00644" name="l00644"></a><span class="lineno"> 644</span> fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#a6ea7e53fd19088193d6847257a7abd95">GetOrdering</a>(),</div>
<div class="line"><a id="l00645" name="l00645"></a><span class="lineno"> 645</span> std::string(fes-><a class="code hl_function" href="classmfem_1_1FiniteElementSpace.html#ac5d1bf44188ba66cf68090eebd976bb4">FEColl</a>()-><a class="code hl_function" href="classmfem_1_1FiniteElementCollection.html#a8655364bde3b708590655b456adf5ba8">Name</a>()) );</div>
<div class="line"><a id="l00646" name="l00646"></a><span class="lineno"> 646</span> <span class="comment">// calls Vector::Print</span></div>
<div class="line"><a id="l00647" name="l00647"></a><span class="lineno"> 647</span> grid_function.<a class="code hl_function" href="classmfem_1_1Vector.html#a3d2b3e40a087dfdec6d1743e77e1da3f">Print</a>(*<span class="keyword">this</span>, variable_name+<span class="stringliteral">"/full"</span>);</div>
<div class="line"><a id="l00648" name="l00648"></a><span class="lineno"> 648</span> </div>
<div class="line"><a id="l00649" name="l00649"></a><span class="lineno"> 649</span> <span class="keywordflow">if</span> (!refine && type == <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7a87b63755d9dd3aba31248ba7f8c04152">adios2stream::data_type::point_data</a>)</div>
<div class="line"><a id="l00650" name="l00650"></a><span class="lineno"> 650</span> {</div>
<div class="line"><a id="l00651" name="l00651"></a><span class="lineno"> 651</span> point_data_variables.insert(variable_name+<span class="stringliteral">"/full"</span>);</div>
<div class="line"><a id="l00652" name="l00652"></a><span class="lineno"> 652</span> }</div>
<div class="line"><a id="l00653" name="l00653"></a><span class="lineno"> 653</span> }</div>
<div class="line"><a id="l00654" name="l00654"></a><span class="lineno"> 654</span>}</div>
</div>
<div class="line"><a id="l00655" name="l00655"></a><span class="lineno"> 655</span> </div>
<div class="line"><a id="l00656" name="l00656"></a><span class="lineno"> 656</span><span class="comment">// PRIVATE</span></div>
<div class="line"><a id="l00657" name="l00657"></a><span class="lineno"> 657</span>int32_t adios2stream::GLVISToVTKType(</div>
<div class="line"><a id="l00658" name="l00658"></a><span class="lineno"> 658</span> <span class="keyword">const</span> <span class="keywordtype">int</span> glvisType) <span class="keyword">const</span> <span class="keyword">noexcept</span></div>
<div class="line"><a id="l00659" name="l00659"></a><span class="lineno"> 659</span>{</div>
<div class="line"><a id="l00660" name="l00660"></a><span class="lineno"> 660</span> uint32_t vtkType = 0;</div>
<div class="line"><a id="l00661" name="l00661"></a><span class="lineno"> 661</span> <span class="keywordflow">switch</span> (glvisType)</div>
<div class="line"><a id="l00662" name="l00662"></a><span class="lineno"> 662</span> {</div>
<div class="line"><a id="l00663" name="l00663"></a><span class="lineno"> 663</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a3a4eeb8006188bea7c806ebbef23ca90">Geometry::Type::POINT</a>:</div>
<div class="line"><a id="l00664" name="l00664"></a><span class="lineno"> 664</span> vtkType = 1;</div>
<div class="line"><a id="l00665" name="l00665"></a><span class="lineno"> 665</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00666" name="l00666"></a><span class="lineno"> 666</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a8f7e0d60f1bd0d6fb536dd2ab2536ed5">Geometry::Type::SEGMENT</a>:</div>
<div class="line"><a id="l00667" name="l00667"></a><span class="lineno"> 667</span> vtkType = 3;</div>
<div class="line"><a id="l00668" name="l00668"></a><span class="lineno"> 668</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00669" name="l00669"></a><span class="lineno"> 669</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805aa33f4004c01f4f9f4a1763d73f97c88c">Geometry::Type::TRIANGLE</a>:</div>
<div class="line"><a id="l00670" name="l00670"></a><span class="lineno"> 670</span> vtkType = 5;</div>
<div class="line"><a id="l00671" name="l00671"></a><span class="lineno"> 671</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00672" name="l00672"></a><span class="lineno"> 672</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805abbe96d7ec4feeeeaf8fcb297e3f196ed">Geometry::Type::SQUARE</a>:</div>
<div class="line"><a id="l00673" name="l00673"></a><span class="lineno"> 673</span> <span class="comment">// vtkType = 8;</span></div>
<div class="line"><a id="l00674" name="l00674"></a><span class="lineno"> 674</span> vtkType = 9;</div>
<div class="line"><a id="l00675" name="l00675"></a><span class="lineno"> 675</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00676" name="l00676"></a><span class="lineno"> 676</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a1038282255f14f1056c8cde9247b0864">Geometry::Type::TETRAHEDRON</a>:</div>
<div class="line"><a id="l00677" name="l00677"></a><span class="lineno"> 677</span> vtkType = 10;</div>
<div class="line"><a id="l00678" name="l00678"></a><span class="lineno"> 678</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00679" name="l00679"></a><span class="lineno"> 679</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805ac812b0ab34c8feda27273aeb7d9f6cfb">Geometry::Type::CUBE</a>:</div>
<div class="line"><a id="l00680" name="l00680"></a><span class="lineno"> 680</span> <span class="comment">// vtkType = 11;</span></div>
<div class="line"><a id="l00681" name="l00681"></a><span class="lineno"> 681</span> vtkType = 12;</div>
<div class="line"><a id="l00682" name="l00682"></a><span class="lineno"> 682</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00683" name="l00683"></a><span class="lineno"> 683</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805ae1d2a82c44cce8bd65fa68ac3a8788f3">Geometry::Type::PRISM</a>:</div>
<div class="line"><a id="l00684" name="l00684"></a><span class="lineno"> 684</span> vtkType = 13;</div>
<div class="line"><a id="l00685" name="l00685"></a><span class="lineno"> 685</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00686" name="l00686"></a><span class="lineno"> 686</span> <span class="keywordflow">default</span>:</div>
<div class="line"><a id="l00687" name="l00687"></a><span class="lineno"> 687</span> vtkType = 0;</div>
<div class="line"><a id="l00688" name="l00688"></a><span class="lineno"> 688</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00689" name="l00689"></a><span class="lineno"> 689</span> }</div>
<div class="line"><a id="l00690" name="l00690"></a><span class="lineno"> 690</span> <span class="keywordflow">return</span> vtkType;</div>
<div class="line"><a id="l00691" name="l00691"></a><span class="lineno"> 691</span>}</div>
<div class="line"><a id="l00692" name="l00692"></a><span class="lineno"> 692</span> </div>
<div class="line"><a id="l00693" name="l00693"></a><span class="lineno"> 693</span><span class="keywordtype">bool</span> adios2stream::IsConstantElementType(<span class="keyword">const</span> Array<Element*>& elements ) <span class="keyword">const</span></div>
<div class="line"><a id="l00694" name="l00694"></a><span class="lineno"> 694</span><span class="keyword">noexcept</span></div>
<div class="line"><a id="l00695" name="l00695"></a><span class="lineno"> 695</span>{</div>
<div class="line"><a id="l00696" name="l00696"></a><span class="lineno"> 696</span> <span class="keywordtype">bool</span> isConstType = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00697" name="l00697"></a><span class="lineno"> 697</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805">Geometry::Type</a> type = elements[0]->GetGeometryType();</div>
<div class="line"><a id="l00698" name="l00698"></a><span class="lineno"> 698</span> </div>
<div class="line"><a id="l00699" name="l00699"></a><span class="lineno"> 699</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> e = 1; e < elements.Size(); ++e)</div>
<div class="line"><a id="l00700" name="l00700"></a><span class="lineno"> 700</span> {</div>
<div class="line"><a id="l00701" name="l00701"></a><span class="lineno"> 701</span> <span class="keywordflow">if</span> (type != elements[e]->GetGeometryType())</div>
<div class="line"><a id="l00702" name="l00702"></a><span class="lineno"> 702</span> {</div>
<div class="line"><a id="l00703" name="l00703"></a><span class="lineno"> 703</span> isConstType = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00704" name="l00704"></a><span class="lineno"> 704</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00705" name="l00705"></a><span class="lineno"> 705</span> }</div>
<div class="line"><a id="l00706" name="l00706"></a><span class="lineno"> 706</span> }</div>
<div class="line"><a id="l00707" name="l00707"></a><span class="lineno"> 707</span> <span class="keywordflow">return</span> isConstType;</div>
<div class="line"><a id="l00708" name="l00708"></a><span class="lineno"> 708</span>}</div>
<div class="line"><a id="l00709" name="l00709"></a><span class="lineno"> 709</span> </div>
<div class="line"><a id="l00710" name="l00710"></a><span class="lineno"> 710</span>std::string adios2stream::VTKSchema() const noexcept</div>
<div class="line"><a id="l00711" name="l00711"></a><span class="lineno"> 711</span>{</div>
<div class="line"><a id="l00712" name="l00712"></a><span class="lineno"> 712</span> std::string vtkSchema = R<span class="stringliteral">"(</span></div>
<div class="line"><a id="l00713" name="l00713"></a><span class="lineno"> 713</span><span class="stringliteral"><?xml version="1.0"?></span></div>
<div class="line"><a id="l00714" name="l00714"></a><span class="lineno"> 714</span><span class="stringliteral"><VTKFile type="UnstructuredGrid" version="0.2" byte_order="LittleEndian"></span></div>
<div class="line"><a id="l00715" name="l00715"></a><span class="lineno"> 715</span><span class="stringliteral"> <UnstructuredGrid></span></div>
<div class="line"><a id="l00716" name="l00716"></a><span class="lineno"> 716</span><span class="stringliteral"> <Piece NumberOfPoints="NumOfVertices" NumberOfCells="NumOfElements"></span></div>
<div class="line"><a id="l00717" name="l00717"></a><span class="lineno"> 717</span><span class="stringliteral"> <Points></span></div>
<div class="line"><a id="l00718" name="l00718"></a><span class="lineno"> 718</span><span class="stringliteral"> <DataArray Name="vertices" />)";</span></div>
<div class="line"><a id="l00719" name="l00719"></a><span class="lineno"> 719</span><span class="stringliteral"></span> </div>
<div class="line"><a id="l00720" name="l00720"></a><span class="lineno"> 720</span><span class="stringliteral"> vtkSchema += R</span><span class="stringliteral">"(</span></div>
<div class="line"><a id="l00721" name="l00721"></a><span class="lineno"> 721</span><span class="stringliteral"> </Points></span></div>
<div class="line"><a id="l00722" name="l00722"></a><span class="lineno"> 722</span><span class="stringliteral"> <CellData></span></div>
<div class="line"><a id="l00723" name="l00723"></a><span class="lineno"> 723</span><span class="stringliteral"> <DataArray Name="attribute" /></span></div>
<div class="line"><a id="l00724" name="l00724"></a><span class="lineno"> 724</span><span class="stringliteral"> </CellData></span></div>
<div class="line"><a id="l00725" name="l00725"></a><span class="lineno"> 725</span><span class="stringliteral"> <Cells></span></div>
<div class="line"><a id="l00726" name="l00726"></a><span class="lineno"> 726</span><span class="stringliteral"> <DataArray Name="connectivity" /></span></div>
<div class="line"><a id="l00727" name="l00727"></a><span class="lineno"> 727</span><span class="stringliteral"> <DataArray Name="types" /></span></div>
<div class="line"><a id="l00728" name="l00728"></a><span class="lineno"> 728</span><span class="stringliteral"> </Cells></span></div>
<div class="line"><a id="l00729" name="l00729"></a><span class="lineno"> 729</span><span class="stringliteral"> <PointData>)";</span></div>
<div class="line"><a id="l00730" name="l00730"></a><span class="lineno"> 730</span><span class="stringliteral"></span> </div>
<div class="line"><a id="l00731" name="l00731"></a><span class="lineno"> 731</span><span class="stringliteral"> </span><span class="keywordflow">if</span> (point_data_variables.empty())</div>
<div class="line"><a id="l00732" name="l00732"></a><span class="lineno"> 732</span> {</div>
<div class="line"><a id="l00733" name="l00733"></a><span class="lineno"> 733</span> vtkSchema += <span class="stringliteral">"\n"</span>;</div>
<div class="line"><a id="l00734" name="l00734"></a><span class="lineno"> 734</span> }</div>
<div class="line"><a id="l00735" name="l00735"></a><span class="lineno"> 735</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00736" name="l00736"></a><span class="lineno"> 736</span> {</div>
<div class="line"><a id="l00737" name="l00737"></a><span class="lineno"> 737</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> std::string& point_datum : point_data_variables )</div>
<div class="line"><a id="l00738" name="l00738"></a><span class="lineno"> 738</span> {</div>
<div class="line"><a id="l00739" name="l00739"></a><span class="lineno"> 739</span> vtkSchema += <span class="stringliteral">" <DataArray Name=\""</span> + point_datum +<span class="stringliteral">"\"/>\n"</span>;</div>
<div class="line"><a id="l00740" name="l00740"></a><span class="lineno"> 740</span> }</div>
<div class="line"><a id="l00741" name="l00741"></a><span class="lineno"> 741</span> }</div>
<div class="line"><a id="l00742" name="l00742"></a><span class="lineno"> 742</span> </div>
<div class="line"><a id="l00743" name="l00743"></a><span class="lineno"> 743</span> <span class="keywordflow">if</span> (transient)</div>
<div class="line"><a id="l00744" name="l00744"></a><span class="lineno"> 744</span> {</div>
<div class="line"><a id="l00745" name="l00745"></a><span class="lineno"> 745</span> vtkSchema += <span class="stringliteral">" <DataArray Name=\"TIME\">\n"</span>;</div>
<div class="line"><a id="l00746" name="l00746"></a><span class="lineno"> 746</span> vtkSchema += <span class="stringliteral">" TIME\n"</span>;</div>
<div class="line"><a id="l00747" name="l00747"></a><span class="lineno"> 747</span> vtkSchema += <span class="stringliteral">" </DataArray>\n"</span>;</div>
<div class="line"><a id="l00748" name="l00748"></a><span class="lineno"> 748</span> }</div>
<div class="line"><a id="l00749" name="l00749"></a><span class="lineno"> 749</span> </div>
<div class="line"><a id="l00750" name="l00750"></a><span class="lineno"> 750</span> vtkSchema += R<span class="stringliteral">"(</span></div>
<div class="line"><a id="l00751" name="l00751"></a><span class="lineno"> 751</span><span class="stringliteral"> </PointData></span></div>
<div class="line"><a id="l00752" name="l00752"></a><span class="lineno"> 752</span><span class="stringliteral"> </Piece></span></div>
<div class="line"><a id="l00753" name="l00753"></a><span class="lineno"> 753</span><span class="stringliteral"> </UnstructuredGrid></span></div>
<div class="line"><a id="l00754" name="l00754"></a><span class="lineno"> 754</span><span class="stringliteral"> </VTKFile>)";</span></div>
<div class="line"><a id="l00755" name="l00755"></a><span class="lineno"> 755</span><span class="stringliteral"></span> </div>
<div class="line"><a id="l00756" name="l00756"></a><span class="lineno"> 756</span><span class="stringliteral"> </span><span class="keywordflow">return</span> vtkSchema;</div>
<div class="line"><a id="l00757" name="l00757"></a><span class="lineno"> 757</span>}</div>
<div class="line"><a id="l00758" name="l00758"></a><span class="lineno"> 758</span> </div>
<div class="line"><a id="l00759" name="l00759"></a><span class="lineno"> 759</span>adios2::Mode adios2stream::ToADIOS2Mode(<span class="keyword">const</span> <a class="code hl_enumeration" href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dc">adios2stream::openmode</a> mode) <span class="keyword">const</span></div>
<div class="line"><a id="l00760" name="l00760"></a><span class="lineno"> 760</span><span class="keyword">noexcept</span></div>
<div class="line"><a id="l00761" name="l00761"></a><span class="lineno"> 761</span>{</div>
<div class="line"><a id="l00762" name="l00762"></a><span class="lineno"> 762</span> adios2::Mode adios2Mode = adios2::Mode::Undefined;</div>
<div class="line"><a id="l00763" name="l00763"></a><span class="lineno"> 763</span> <span class="keywordflow">switch</span> (mode)</div>
<div class="line"><a id="l00764" name="l00764"></a><span class="lineno"> 764</span> {</div>
<div class="line"><a id="l00765" name="l00765"></a><span class="lineno"> 765</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dcac68271a63ddbc431c307beb7d2918275">adios2stream::openmode::out</a>:</div>
<div class="line"><a id="l00766" name="l00766"></a><span class="lineno"> 766</span> adios2Mode = adios2::Mode::Write;</div>
<div class="line"><a id="l00767" name="l00767"></a><span class="lineno"> 767</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00768" name="l00768"></a><span class="lineno"> 768</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dca13b5bfe96f3e2fe411c9f66f4a582adf">adios2stream::openmode::in</a>:</div>
<div class="line"><a id="l00769" name="l00769"></a><span class="lineno"> 769</span> adios2Mode = adios2::Mode::Read;</div>
<div class="line"><a id="l00770" name="l00770"></a><span class="lineno"> 770</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00771" name="l00771"></a><span class="lineno"> 771</span> <span class="keywordflow">default</span>:</div>
<div class="line"><a id="l00772" name="l00772"></a><span class="lineno"> 772</span> <span class="keyword">const</span> std::string message = <span class="stringliteral">"MFEM adios2stream ERROR: only "</span></div>
<div class="line"><a id="l00773" name="l00773"></a><span class="lineno"> 773</span> <span class="stringliteral">"openmode::out and openmode::in "</span></div>
<div class="line"><a id="l00774" name="l00774"></a><span class="lineno"> 774</span> <span class="stringliteral">" are valid, in call to adios2stream constructor"</span>;</div>
<div class="line"><a id="l00775" name="l00775"></a><span class="lineno"> 775</span> <a class="code hl_function" href="namespacemfem.html#a2a32aaca3e6d73a0dc6ca11de559c7e0">mfem_error</a>(message.c_str());</div>
<div class="line"><a id="l00776" name="l00776"></a><span class="lineno"> 776</span> }</div>
<div class="line"><a id="l00777" name="l00777"></a><span class="lineno"> 777</span> <span class="keywordflow">return</span> adios2Mode;</div>
<div class="line"><a id="l00778" name="l00778"></a><span class="lineno"> 778</span>}</div>
<div class="line"><a id="l00779" name="l00779"></a><span class="lineno"> 779</span> </div>
<div class="line"><a id="l00780" name="l00780"></a><span class="lineno"> 780</span>} <span class="comment">// end namespace mfem</span></div>
<div class="line"><a id="l00781" name="l00781"></a><span class="lineno"> 781</span> </div>
<div class="line"><a id="l00782" name="l00782"></a><span class="lineno"> 782</span><span class="preprocessor">#endif </span><span class="comment">// MFEM_USE_ADIOS2</span></div>
<div class="ttc" id="aadios2stream_8hpp_html"><div class="ttname"><a href="adios2stream_8hpp.html">adios2stream.hpp</a></div></div>
<div class="ttc" id="aarray_8hpp_html"><div class="ttname"><a href="array_8hpp.html">array.hpp</a></div></div>
<div class="ttc" id="aclassmfem_1_1Array_html"><div class="ttname"><a href="classmfem_1_1Array.html">mfem::Array</a></div><div class="ttdef"><b>Definition</b> <a href="array_8hpp_source.html#l00046">array.hpp:47</a></div></div>
<div class="ttc" id="aclassmfem_1_1Array_html_a5efef8b3cd9f7f35f89bb8330e76d120"><div class="ttname"><a href="classmfem_1_1Array.html#a5efef8b3cd9f7f35f89bb8330e76d120">mfem::Array::Size</a></div><div class="ttdeci">int Size() const</div><div class="ttdoc">Return the logical size of the array.</div><div class="ttdef"><b>Definition</b> <a href="array_8hpp_source.html#l00147">array.hpp:147</a></div></div>
<div class="ttc" id="aclassmfem_1_1DenseMatrix_html"><div class="ttname"><a href="classmfem_1_1DenseMatrix.html">mfem::DenseMatrix</a></div><div class="ttdoc">Data type dense matrix using column-major storage.</div><div class="ttdef"><b>Definition</b> <a href="densemat_8hpp_source.html#l00023">densemat.hpp:24</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementCollection_html_a8655364bde3b708590655b456adf5ba8"><div class="ttname"><a href="classmfem_1_1FiniteElementCollection.html#a8655364bde3b708590655b456adf5ba8">mfem::FiniteElementCollection::Name</a></div><div class="ttdeci">virtual const char * Name() const</div><div class="ttdef"><b>Definition</b> <a href="fe__coll_8hpp_source.html#l00079">fe_coll.hpp:79</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementSpace_html"><div class="ttname"><a href="classmfem_1_1FiniteElementSpace.html">mfem::FiniteElementSpace</a></div><div class="ttdoc">Class FiniteElementSpace - responsible for providing FEM view of the mesh, mainly managing the set of...</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00243">fespace.hpp:244</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementSpace_html_a6ea7e53fd19088193d6847257a7abd95"><div class="ttname"><a href="classmfem_1_1FiniteElementSpace.html#a6ea7e53fd19088193d6847257a7abd95">mfem::FiniteElementSpace::GetOrdering</a></div><div class="ttdeci">Ordering::Type GetOrdering() const</div><div class="ttdoc">Return the ordering method.</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00876">fespace.hpp:876</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementSpace_html_ac5d1bf44188ba66cf68090eebd976bb4"><div class="ttname"><a href="classmfem_1_1FiniteElementSpace.html#ac5d1bf44188ba66cf68090eebd976bb4">mfem::FiniteElementSpace::FEColl</a></div><div class="ttdeci">const FiniteElementCollection * FEColl() const</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00878">fespace.hpp:878</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementSpace_html_ac6d02d2d7116e03055937cc05b71574f"><div class="ttname"><a href="classmfem_1_1FiniteElementSpace.html#ac6d02d2d7116e03055937cc05b71574f">mfem::FiniteElementSpace::GetMesh</a></div><div class="ttdeci">Mesh * GetMesh() const</div><div class="ttdoc">Returns the mesh.</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00679">fespace.hpp:679</a></div></div>
<div class="ttc" id="aclassmfem_1_1FiniteElementSpace_html_ad27a4b8249411b018f03b3319bed9276"><div class="ttname"><a href="classmfem_1_1FiniteElementSpace.html#ad27a4b8249411b018f03b3319bed9276">mfem::FiniteElementSpace::GetVDim</a></div><div class="ttdeci">int GetVDim() const</div><div class="ttdoc">Returns the vector dimension of the finite element space.</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00841">fespace.hpp:841</a></div></div>
<div class="ttc" id="aclassmfem_1_1GeometryRefiner_html_a02322fb06b6129c5d2170fff4de16155"><div class="ttname"><a href="classmfem_1_1GeometryRefiner.html#a02322fb06b6129c5d2170fff4de16155">mfem::GeometryRefiner::Refine</a></div><div class="ttdeci">RefinedGeometry * Refine(Geometry::Type Geom, int Times, int ETimes=1)</div><div class="ttdef"><b>Definition</b> <a href="geom_8cpp_source.html#l01136">geom.cpp:1136</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805">mfem::Geometry::Type</a></div><div class="ttdeci">Type</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00039">geom.hpp:40</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805a1038282255f14f1056c8cde9247b0864"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a1038282255f14f1056c8cde9247b0864">mfem::Geometry::TETRAHEDRON</a></div><div class="ttdeci">@ TETRAHEDRON</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805a3a4eeb8006188bea7c806ebbef23ca90"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a3a4eeb8006188bea7c806ebbef23ca90">mfem::Geometry::POINT</a></div><div class="ttdeci">@ POINT</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805a8f7e0d60f1bd0d6fb536dd2ab2536ed5"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805a8f7e0d60f1bd0d6fb536dd2ab2536ed5">mfem::Geometry::SEGMENT</a></div><div class="ttdeci">@ SEGMENT</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805aa33f4004c01f4f9f4a1763d73f97c88c"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805aa33f4004c01f4f9f4a1763d73f97c88c">mfem::Geometry::TRIANGLE</a></div><div class="ttdeci">@ TRIANGLE</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805abbe96d7ec4feeeeaf8fcb297e3f196ed"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805abbe96d7ec4feeeeaf8fcb297e3f196ed">mfem::Geometry::SQUARE</a></div><div class="ttdeci">@ SQUARE</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805ac812b0ab34c8feda27273aeb7d9f6cfb"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805ac812b0ab34c8feda27273aeb7d9f6cfb">mfem::Geometry::CUBE</a></div><div class="ttdeci">@ CUBE</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a2c101bb5c270ab5eeffb510e2c274805ae1d2a82c44cce8bd65fa68ac3a8788f3"><div class="ttname"><a href="classmfem_1_1Geometry.html#a2c101bb5c270ab5eeffb510e2c274805ae1d2a82c44cce8bd65fa68ac3a8788f3">mfem::Geometry::PRISM</a></div><div class="ttdeci">@ PRISM</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00042">geom.hpp:42</a></div></div>
<div class="ttc" id="aclassmfem_1_1Geometry_html_a558ff9380d5660ef9f500faeb89ed536"><div class="ttname"><a href="classmfem_1_1Geometry.html#a558ff9380d5660ef9f500faeb89ed536">mfem::Geometry::GetVertices</a></div><div class="ttdeci">const IntegrationRule * GetVertices(int GeomType) const</div><div class="ttdoc">Return an IntegrationRule consisting of all vertices of the given Geometry::Type, GeomType.</div><div class="ttdef"><b>Definition</b> <a href="geom_8cpp_source.html#l00293">geom.cpp:293</a></div></div>
<div class="ttc" id="aclassmfem_1_1GridFunction_html"><div class="ttname"><a href="classmfem_1_1GridFunction.html">mfem::GridFunction</a></div><div class="ttdoc">Class for grid function - Vector with associated FE space.</div><div class="ttdef"><b>Definition</b> <a href="gridfunc_8hpp_source.html#l00030">gridfunc.hpp:31</a></div></div>
<div class="ttc" id="aclassmfem_1_1GridFunction_html_a12557ab48919b8d3c1cb8892ce17d85d"><div class="ttname"><a href="classmfem_1_1GridFunction.html#a12557ab48919b8d3c1cb8892ce17d85d">mfem::GridFunction::GetValues</a></div><div class="ttdeci">void GetValues(int i, const IntegrationRule &ir, Vector &vals, int vdim=1) const</div><div class="ttdef"><b>Definition</b> <a href="gridfunc_8cpp_source.html#l00518">gridfunc.cpp:518</a></div></div>
<div class="ttc" id="aclassmfem_1_1GridFunction_html_a6ba31d8990675c594e8ee75a2be18f29"><div class="ttname"><a href="classmfem_1_1GridFunction.html#a6ba31d8990675c594e8ee75a2be18f29">mfem::GridFunction::FESpace</a></div><div class="ttdeci">FiniteElementSpace * FESpace()</div><div class="ttdef"><b>Definition</b> <a href="gridfunc_8hpp_source.html#l01484">gridfunc.hpp:1484</a></div></div>
<div class="ttc" id="aclassmfem_1_1GridFunction_html_aa21a7180e052dcf313589381fd10355a"><div class="ttname"><a href="classmfem_1_1GridFunction.html#aa21a7180e052dcf313589381fd10355a">mfem::GridFunction::VectorDim</a></div><div class="ttdeci">int VectorDim() const</div><div class="ttdoc">Shortcut for calling FiniteElementSpace::GetVectorDim() on the underlying fes.</div><div class="ttdef"><b>Definition</b> <a href="gridfunc_8cpp_source.html#l00353">gridfunc.cpp:353</a></div></div>
<div class="ttc" id="aclassmfem_1_1GridFunction_html_af29be245d92e79eb31bb1e7dc733db3b"><div class="ttname"><a href="classmfem_1_1GridFunction.html#af29be245d92e79eb31bb1e7dc733db3b">mfem::GridFunction::GetVectorValues</a></div><div class="ttdeci">void GetVectorValues(int i, const IntegrationRule &ir, DenseMatrix &vals, DenseMatrix &tr) const</div><div class="ttdef"><b>Definition</b> <a href="gridfunc_8cpp_source.html#l00711">gridfunc.cpp:711</a></div></div>
<div class="ttc" id="aclassmfem_1_1IntegrationRule_html_a65a041b5cd5417664446932fa946409d"><div class="ttname"><a href="classmfem_1_1IntegrationRule.html#a65a041b5cd5417664446932fa946409d">mfem::IntegrationRule::GetNPoints</a></div><div class="ttdeci">int GetNPoints() const</div><div class="ttdoc">Returns the number of the points in the integration rule.</div><div class="ttdef"><b>Definition</b> <a href="intrules_8hpp_source.html#l00256">intrules.hpp:256</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html"><div class="ttname"><a href="classmfem_1_1Mesh.html">mfem::Mesh</a></div><div class="ttdoc">Mesh data type.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l00063">mesh.hpp:64</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a004c7eff16b8b8a5e4a2a055dbe1eef2"><div class="ttname"><a href="classmfem_1_1Mesh.html#a004c7eff16b8b8a5e4a2a055dbe1eef2">mfem::Mesh::vertices</a></div><div class="ttdeci">Array< Vertex > vertices</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l00105">mesh.hpp:105</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a1995b5687a77992652d76edc04149e36"><div class="ttname"><a href="classmfem_1_1Mesh.html#a1995b5687a77992652d76edc04149e36">mfem::Mesh::NURBSext</a></div><div class="ttdeci">NURBSExtension * NURBSext</div><div class="ttdoc">Optional NURBS mesh extension.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l00298">mesh.hpp:298</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a2883f6489c821ed509ce84e74b919b54"><div class="ttname"><a href="classmfem_1_1Mesh.html#a2883f6489c821ed509ce84e74b919b54">mfem::Mesh::GetAttribute</a></div><div class="ttdeci">int GetAttribute(int i) const</div><div class="ttdoc">Return the attribute of element i.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01389">mesh.hpp:1389</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a641d7dd01d6982be04d7c8410e2eafe8"><div class="ttname"><a href="classmfem_1_1Mesh.html#a641d7dd01d6982be04d7c8410e2eafe8">mfem::Mesh::GetNE</a></div><div class="ttdeci">int GetNE() const</div><div class="ttdoc">Returns number of elements.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01282">mesh.hpp:1282</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a6875d857942c66cb8cea1159337b807a"><div class="ttname"><a href="classmfem_1_1Mesh.html#a6875d857942c66cb8cea1159337b807a">mfem::Mesh::Dimension</a></div><div class="ttdeci">int Dimension() const</div><div class="ttdoc">Dimension of the reference space used within the elements.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01216">mesh.hpp:1216</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a7f725f1a2d70b63d9340eaac577b75dc"><div class="ttname"><a href="classmfem_1_1Mesh.html#a7f725f1a2d70b63d9340eaac577b75dc">mfem::Mesh::GetElementTransformation</a></div><div class="ttdeci">void GetElementTransformation(int i, IsoparametricTransformation *ElTr) const</div><div class="ttdoc">Builds the transformation defining the i-th element in ElTr. ElTr must be allocated in advance and wi...</div><div class="ttdef"><b>Definition</b> <a href="mesh_8cpp_source.html#l00357">mesh.cpp:357</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a8b7a6459b9c4ef0bada3ef9e00dcf082"><div class="ttname"><a href="classmfem_1_1Mesh.html#a8b7a6459b9c4ef0bada3ef9e00dcf082">mfem::Mesh::SpaceDimension</a></div><div class="ttdeci">int SpaceDimension() const</div><div class="ttdoc">Dimension of the physical space containing the mesh.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01219">mesh.hpp:1219</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_a9a0fa5f0dbca754e36437b13ae6b158f"><div class="ttname"><a href="classmfem_1_1Mesh.html#a9a0fa5f0dbca754e36437b13ae6b158f">mfem::Mesh::GetNodes</a></div><div class="ttdeci">void GetNodes(Vector &node_coord) const</div><div class="ttdef"><b>Definition</b> <a href="mesh_8cpp_source.html#l09294">mesh.cpp:9294</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_aa54d3303834de5d84f2ab3ea41dc3385"><div class="ttname"><a href="classmfem_1_1Mesh.html#aa54d3303834de5d84f2ab3ea41dc3385">mfem::Mesh::GetNV</a></div><div class="ttdeci">int GetNV() const</div><div class="ttdoc">Returns number of vertices. Vertices are only at the corners of elements, where you would expect them...</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01279">mesh.hpp:1279</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_accf0f0075e05fbd2e8086f81027f5b38"><div class="ttname"><a href="classmfem_1_1Mesh.html#accf0f0075e05fbd2e8086f81027f5b38">mfem::Mesh::ncmesh</a></div><div class="ttdeci">NCMesh * ncmesh</div><div class="ttdoc">Optional nonconforming mesh extension.</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l00299">mesh.hpp:299</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_aed059a8a2f3fd0481f57a08aecf30059"><div class="ttname"><a href="classmfem_1_1Mesh.html#aed059a8a2f3fd0481f57a08aecf30059">mfem::Mesh::GetElementBaseGeometry</a></div><div class="ttdeci">Geometry::Type GetElementBaseGeometry(int i) const</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l01455">mesh.hpp:1455</a></div></div>
<div class="ttc" id="aclassmfem_1_1Mesh_html_af9007b5f05f3309bb84ec20d133eeea7"><div class="ttname"><a href="classmfem_1_1Mesh.html#af9007b5f05f3309bb84ec20d133eeea7">mfem::Mesh::elements</a></div><div class="ttdeci">Array< Element * > elements</div><div class="ttdef"><b>Definition</b> <a href="mesh_8hpp_source.html#l00100">mesh.hpp:100</a></div></div>
<div class="ttc" id="aclassmfem_1_1Operator_html_a59261632e2ae121003fa5bac1852aa2c"><div class="ttname"><a href="classmfem_1_1Operator.html#a59261632e2ae121003fa5bac1852aa2c">mfem::Operator::Height</a></div><div class="ttdeci">int Height() const</div><div class="ttdoc">Get the height (size of output) of the Operator. Synonym with NumRows().</div><div class="ttdef"><b>Definition</b> <a href="linalg_2operator_8hpp_source.html#l00066">operator.hpp:66</a></div></div>
<div class="ttc" id="aclassmfem_1_1Operator_html_a8d6d09abcca8b7523d28c61e97ee9a15"><div class="ttname"><a href="classmfem_1_1Operator.html#a8d6d09abcca8b7523d28c61e97ee9a15">mfem::Operator::Width</a></div><div class="ttdeci">int Width() const</div><div class="ttdoc">Get the width (size of input) of the Operator. Synonym with NumCols().</div><div class="ttdef"><b>Definition</b> <a href="linalg_2operator_8hpp_source.html#l00072">operator.hpp:72</a></div></div>
<div class="ttc" id="aclassmfem_1_1Ordering_html_ad543b8eddc91d2d282374bd9cf44818c"><div class="ttname"><a href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818c">mfem::Ordering::Type</a></div><div class="ttdeci">Type</div><div class="ttdoc">Ordering methods:</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00033">fespace.hpp:34</a></div></div>
<div class="ttc" id="aclassmfem_1_1Ordering_html_ad543b8eddc91d2d282374bd9cf44818ca144c090b834bdc63082b3e959fb0f93f"><div class="ttname"><a href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818ca144c090b834bdc63082b3e959fb0f93f">mfem::Ordering::byVDIM</a></div><div class="ttdeci">@ byVDIM</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00041">fespace.hpp:38</a></div></div>
<div class="ttc" id="aclassmfem_1_1Ordering_html_ad543b8eddc91d2d282374bd9cf44818cac173477ff6eb53486121ad718ecd5f03"><div class="ttname"><a href="classmfem_1_1Ordering.html#ad543b8eddc91d2d282374bd9cf44818cac173477ff6eb53486121ad718ecd5f03">mfem::Ordering::byNODES</a></div><div class="ttdeci">@ byNODES</div><div class="ttdef"><b>Definition</b> <a href="fespace_8hpp_source.html#l00037">fespace.hpp:35</a></div></div>
<div class="ttc" id="aclassmfem_1_1RefinedGeometry_html"><div class="ttname"><a href="classmfem_1_1RefinedGeometry.html">mfem::RefinedGeometry</a></div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00317">geom.hpp:318</a></div></div>
<div class="ttc" id="aclassmfem_1_1RefinedGeometry_html_a06d15a8bc8081d6b5e120057e485129f"><div class="ttname"><a href="classmfem_1_1RefinedGeometry.html#a06d15a8bc8081d6b5e120057e485129f">mfem::RefinedGeometry::RefPts</a></div><div class="ttdeci">IntegrationRule RefPts</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00321">geom.hpp:321</a></div></div>
<div class="ttc" id="aclassmfem_1_1RefinedGeometry_html_a4b2d00bf63fc89732a277670859845fa"><div class="ttname"><a href="classmfem_1_1RefinedGeometry.html#a4b2d00bf63fc89732a277670859845fa">mfem::RefinedGeometry::RefGeoms</a></div><div class="ttdeci">Array< int > RefGeoms</div><div class="ttdef"><b>Definition</b> <a href="geom_8hpp_source.html#l00322">geom.hpp:322</a></div></div>
<div class="ttc" id="aclassmfem_1_1Vector_html"><div class="ttname"><a href="classmfem_1_1Vector.html">mfem::Vector</a></div><div class="ttdoc">Vector data type.</div><div class="ttdef"><b>Definition</b> <a href="vector_8hpp_source.html#l00081">vector.hpp:82</a></div></div>
<div class="ttc" id="aclassmfem_1_1Vector_html_a3d2b3e40a087dfdec6d1743e77e1da3f"><div class="ttname"><a href="classmfem_1_1Vector.html#a3d2b3e40a087dfdec6d1743e77e1da3f">mfem::Vector::Print</a></div><div class="ttdeci">void Print(std::ostream &out=mfem::out, int width=8) const</div><div class="ttdoc">Prints vector to stream out.</div><div class="ttdef"><b>Definition</b> <a href="vector_8cpp_source.html#l00830">vector.cpp:830</a></div></div>
<div class="ttc" id="aclassmfem_1_1Vector_html_aa9c5be6e53d0993d5851c276ba2a6079"><div class="ttname"><a href="classmfem_1_1Vector.html#aa9c5be6e53d0993d5851c276ba2a6079">mfem::Vector::Size</a></div><div class="ttdeci">int Size() const</div><div class="ttdoc">Returns the size of the vector.</div><div class="ttdef"><b>Definition</b> <a href="vector_8hpp_source.html#l00226">vector.hpp:226</a></div></div>
<div class="ttc" id="aclassmfem_1_1Vector_html_ad3b95940dbc35584167bc142b1969db1"><div class="ttname"><a href="classmfem_1_1Vector.html#ad3b95940dbc35584167bc142b1969db1">mfem::Vector::GetData</a></div><div class="ttdeci">real_t * GetData() const</div><div class="ttdoc">Return a pointer to the beginning of the Vector data.</div><div class="ttdef"><b>Definition</b> <a href="vector_8hpp_source.html#l00235">vector.hpp:235</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a00f2ae07fdc5b77161b6c7c6736550e7"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7">mfem::adios2stream::data_type</a></div><div class="ttdeci">data_type</div><div class="ttdef"><b>Definition</b> <a href="adios2stream_8hpp_source.html#l00066">adios2stream.hpp:66</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a00f2ae07fdc5b77161b6c7c6736550e7a87b63755d9dd3aba31248ba7f8c04152"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a00f2ae07fdc5b77161b6c7c6736550e7a87b63755d9dd3aba31248ba7f8c04152">mfem::adios2stream::data_type::point_data</a></div><div class="ttdeci">@ point_data</div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a21c1849f644d3658d57cea0fdd4b20a2"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a21c1849f644d3658d57cea0fdd4b20a2">mfem::adios2stream::~adios2stream</a></div><div class="ttdeci">virtual ~adios2stream()</div><div class="ttdef"><b>Definition</b> <a href="#l00135">adios2stream.cpp:135</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a2bf783ba906eae41243a63f5b23d6654"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a2bf783ba906eae41243a63f5b23d6654">mfem::adios2stream::SetCycle</a></div><div class="ttdeci">void SetCycle(const int cycle)</div><div class="ttdef"><b>Definition</b> <a href="#l00192">adios2stream.cpp:192</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a5227bf585267f195bdaa9bc577a90a88"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a5227bf585267f195bdaa9bc577a90a88">mfem::adios2stream::SetParameter</a></div><div class="ttdeci">void SetParameter(const std::string key, const std::string value) noexcept</div><div class="ttdef"><b>Definition</b> <a href="#l00151">adios2stream.cpp:151</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a63bb54c8aa16df819b7414f703506c72"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a63bb54c8aa16df819b7414f703506c72">mfem::adios2stream::SetTime</a></div><div class="ttdeci">void SetTime(const double time)</div><div class="ttdef"><b>Definition</b> <a href="#l00185">adios2stream.cpp:185</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a65c2c7207971c4963111c7473e4363a5"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a65c2c7207971c4963111c7473e4363a5">mfem::adios2stream::SetParameters</a></div><div class="ttdeci">void SetParameters(const std::map< std::string, std::string > &parameters=std::map< std::string, std::string >())</div><div class="ttdef"><b>Definition</b> <a href="#l00144">adios2stream.cpp:144</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a670240a485a6fbda7c5349956da060ea"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a670240a485a6fbda7c5349956da060ea">mfem::adios2stream::Print</a></div><div class="ttdeci">void Print(const Mesh &mesh, const adios2stream::mode print_mode=mode::sync)</div><div class="ttdef"><b>Definition</b> <a href="#l00226">adios2stream.cpp:226</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a894ad5a7afa33ccd11cd853b299288aa"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a894ad5a7afa33ccd11cd853b299288aa">mfem::adios2stream::adios2stream</a></div><div class="ttdeci">adios2stream(const std::string &name, const openmode mode, MPI_Comm comm, const std::string engine_type="BPFile")</div><div class="ttdef"><b>Definition</b> <a href="#l00114">adios2stream.cpp:114</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_a9b1f8d84dcdb0e390b7ec95b823b053e"><div class="ttname"><a href="classmfem_1_1adios2stream.html#a9b1f8d84dcdb0e390b7ec95b823b053e">mfem::adios2stream::CurrentStep</a></div><div class="ttdeci">size_t CurrentStep() const</div><div class="ttdef"><b>Definition</b> <a href="#l00203">adios2stream.cpp:203</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_aa4ddc51c5562059675139a0d9ef2ea6e"><div class="ttname"><a href="classmfem_1_1adios2stream.html#aa4ddc51c5562059675139a0d9ef2ea6e">mfem::adios2stream::Save</a></div><div class="ttdeci">void Save(const GridFunction &grid_function, const std::string &variable_name, const data_type type)</div><div class="ttdef"><b>Definition</b> <a href="#l00534">adios2stream.cpp:534</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_ab02f265fbb570d672eab34f4eb2c52df"><div class="ttname"><a href="classmfem_1_1adios2stream.html#ab02f265fbb570d672eab34f4eb2c52df">mfem::adios2stream::EndStep</a></div><div class="ttdeci">void EndStep()</div><div class="ttdef"><b>Definition</b> <a href="#l00171">adios2stream.cpp:171</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_ababbc4b04db7fc2c332f76466d5b87f6"><div class="ttname"><a href="classmfem_1_1adios2stream.html#ababbc4b04db7fc2c332f76466d5b87f6">mfem::adios2stream::BeginStep</a></div><div class="ttdeci">void BeginStep()</div><div class="ttdef"><b>Definition</b> <a href="#l00161">adios2stream.cpp:161</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_ad35656fb518dcbd13b156e7024af3c18"><div class="ttname"><a href="classmfem_1_1adios2stream.html#ad35656fb518dcbd13b156e7024af3c18">mfem::adios2stream::SetRefinementLevel</a></div><div class="ttdeci">void SetRefinementLevel(const int level) noexcept</div><div class="ttdef"><b>Definition</b> <a href="#l00198">adios2stream.cpp:198</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_ad6ac8c1c56b3ae2e0468e975282d08f0"><div class="ttname"><a href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0">mfem::adios2stream::mode</a></div><div class="ttdeci">mode</div><div class="ttdef"><b>Definition</b> <a href="adios2stream_8hpp_source.html#l00064">adios2stream.hpp:64</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_ad6ac8c1c56b3ae2e0468e975282d08f0a63ad9d34f3503826e5f649ae6b7ac92c"><div class="ttname"><a href="classmfem_1_1adios2stream.html#ad6ac8c1c56b3ae2e0468e975282d08f0a63ad9d34f3503826e5f649ae6b7ac92c">mfem::adios2stream::mode::sync</a></div><div class="ttdeci">@ sync</div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_af8d44ce684b1e273d6f3a9d54fbbde63"><div class="ttname"><a href="classmfem_1_1adios2stream.html#af8d44ce684b1e273d6f3a9d54fbbde63">mfem::adios2stream::Close</a></div><div class="ttdeci">void Close()</div><div class="ttdef"><b>Definition</b> <a href="#l00208">adios2stream.cpp:208</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_afe7fe7ac1183ebcf7157d89808bcb3dc"><div class="ttname"><a href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dc">mfem::adios2stream::openmode</a></div><div class="ttdeci">openmode</div><div class="ttdef"><b>Definition</b> <a href="adios2stream_8hpp_source.html#l00061">adios2stream.hpp:61</a></div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_afe7fe7ac1183ebcf7157d89808bcb3dca13b5bfe96f3e2fe411c9f66f4a582adf"><div class="ttname"><a href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dca13b5bfe96f3e2fe411c9f66f4a582adf">mfem::adios2stream::openmode::in</a></div><div class="ttdeci">@ in</div></div>
<div class="ttc" id="aclassmfem_1_1adios2stream_html_afe7fe7ac1183ebcf7157d89808bcb3dcac68271a63ddbc431c307beb7d2918275"><div class="ttname"><a href="classmfem_1_1adios2stream.html#afe7fe7ac1183ebcf7157d89808bcb3dcac68271a63ddbc431c307beb7d2918275">mfem::adios2stream::openmode::out</a></div><div class="ttdeci">@ out</div></div>
<div class="ttc" id="aelement_8hpp_html"><div class="ttname"><a href="element_8hpp.html">element.hpp</a></div></div>