diff --git a/Changes b/Changes index 980c101..9dcce65 100644 --- a/Changes +++ b/Changes @@ -3,6 +3,7 @@ LIST OF CHANGES - Added new delegated methods to WTSI::DNAP::Warehouse::Schema::Result::IseqFlowcell, sample_uuid and sample_lims. + - Updated ORM classes by ingesting changes from the prod database, release 6.33.1 (2024-10-04) - Added .github/dependabot.yml file to auto-update GitHub actions diff --git a/lib/WTSI/DNAP/Warehouse/Schema/Result/Sample.pm b/lib/WTSI/DNAP/Warehouse/Schema/Result/Sample.pm index 29a7958..87a56bf 100644 --- a/lib/WTSI/DNAP/Warehouse/Schema/Result/Sample.pm +++ b/lib/WTSI/DNAP/Warehouse/Schema/Result/Sample.pm @@ -67,7 +67,7 @@ LIMS-specific sample uuid data_type: 'varchar' is_nullable: 0 - size: 20 + size: 255 LIMS-specific sample identifier @@ -459,7 +459,7 @@ __PACKAGE__->add_columns( 'uuid_sample_lims', { data_type => 'varchar', is_nullable => 1, size => 36 }, 'id_sample_lims', - { data_type => 'varchar', is_nullable => 0, size => 20 }, + { data_type => 'varchar', is_nullable => 0, size => 255 }, 'last_updated', { data_type => 'datetime', @@ -798,8 +798,8 @@ __PACKAGE__->has_many( ); -# Created by DBIx::Class::Schema::Loader v0.07051 @ 2023-10-23 16:35:44 -# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:SBUvcjIuSMo1rqiCwp0AEA +# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-10-09 15:42:26 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:S5eGEf8q9fTn5qKSp/Et/g our $VERSION = '0'; diff --git a/lib/WTSI/DNAP/Warehouse/Schema/Result/Study.pm b/lib/WTSI/DNAP/Warehouse/Schema/Result/Study.pm index 7cbddae..37a1a47 100644 --- a/lib/WTSI/DNAP/Warehouse/Schema/Result/Study.pm +++ b/lib/WTSI/DNAP/Warehouse/Schema/Result/Study.pm @@ -306,6 +306,12 @@ The data destination type(s) for the study. It could be 'standard', '14mg' or 'g is_nullable: 1 size: 255 +=head2 programme + + data_type: 'varchar' + is_nullable: 1 + size: 255 + =cut __PACKAGE__->add_columns( @@ -412,6 +418,8 @@ __PACKAGE__->add_columns( { data_type => 'varchar', is_nullable => 1, size => 255 }, 'contaminated_human_data_access_group', { data_type => 'varchar', is_nullable => 1, size => 255 }, + 'programme', + { data_type => 'varchar', is_nullable => 1, size => 255 }, ); =head1 PRIMARY KEY @@ -580,8 +588,8 @@ __PACKAGE__->has_many( ); -# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-08-08 13:33:16 -# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:cSZp6NXki9BI3+HAAlBY9w +# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-10-09 15:42:26 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:5p/5azacjlWMHTtTSrJtew with 'WTSI::DNAP::Warehouse::Schema::Query::LimsFlags'; diff --git a/lib/WTSI/DNAP/Warehouse/Schema/Result/TolSampleBioproject.pm b/lib/WTSI/DNAP/Warehouse/Schema/Result/TolSampleBioproject.pm index cbeb5a2..3e05fd5 100644 --- a/lib/WTSI/DNAP/Warehouse/Schema/Result/TolSampleBioproject.pm +++ b/lib/WTSI/DNAP/Warehouse/Schema/Result/TolSampleBioproject.pm @@ -61,7 +61,7 @@ __PACKAGE__->table('tol_sample_bioproject'); =head2 library_type data_type: 'enum' - extra: {list => ['Chromium genome','Haplotagging','Hi-C','Hi-C - Arima v1','Hi-C - Arima v2','Hi-C - Dovetail','Hi-C - Omni-C','Hi-C - Qiagen','PacBio - CLR','PacBio - HiFi','ONT','RNA PolyA','RNA-seq dUTP eukaryotic','Standard','unknown','HiSeqX PCR free','PacBio - HiFi (ULI)','PacBio - IsoSeq']} + extra: {list => ['Chromium genome','Haplotagging','Hi-C','Hi-C - Arima v1','Hi-C - Arima v2','Hi-C - Dovetail','Hi-C - Omni-C','Hi-C - Qiagen','PacBio - CLR','PacBio - HiFi','ONT','RNA PolyA','RNA-seq dUTP eukaryotic','Standard','unknown','HiSeqX PCR free','PacBio - HiFi (ULI)','PacBio - IsoSeq','ATAC-seq']} is_nullable: 1 =head2 tolid @@ -144,6 +144,7 @@ __PACKAGE__->add_columns( 'HiSeqX PCR free', 'PacBio - HiFi (ULI)', 'PacBio - IsoSeq', + 'ATAC-seq', ], }, is_nullable => 1, @@ -221,8 +222,8 @@ __PACKAGE__->belongs_to( ); -# Created by DBIx::Class::Schema::Loader v0.07051 @ 2023-04-21 14:32:17 -# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:+03wqzLzH0LFAZwFGbEKOA +# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-10-09 15:42:26 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:P7s1muBNrElt8Hd3xqTL3w our $VERSION = '0';