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Updated a list of changes for release 67.1.0
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mgcam committed Nov 28, 2023
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LIST OF CHANGES
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release 67.1.0
- Fix typo in analysis specific overrides for bwa_als_se mapping to bwa0_6
- Add in use of autosome target regions for BGE libraries in seq_alignment
- Add 'merge_by_library' pipeline boolean option. This options is automatially
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lane of the run, sample data for the pool are merged across these lanes.
The 'discovery' part of the algorithm is implemented in
https://github.com/wtsi-npg/npg_tracking/pull/772
- Removed provisions for inline indexes
- Removed a check for rapid runs when deciding whether to merge
- Stop warnings about an undefined value when writing to the log from
npg_pipeline::function::seq_alignment
- Some tests were creating test data in the package's source tree. These
activities are redirected to temporary files and directories in /tmp
- Removed listing of non-existing files from MANIFEST
- Removed superfluous dependency on now removed st::api::request
- Added a test to expose a problem with ref cache, which is resolved by
https://github.com/wtsi-npg/npg_tracking/pull/761

release 67.0.0
- Turn off spatial filter QC check for NovaSeqX
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