.gitignore

.deprecated/
.vscode/
conda/src/
results/
sandbox_lambert/

**/raw/
train/**/*processed*/
evaluation/**/*processed*/
data/proc/**/*processed*/
# **/*processed*/
**/meta/
**/logs/
**/logs*/
**/*logs*/
**/notebook-*
**/inputs/
**/models/
**/nohup*
**/sample_dataset/

**/*example*/
**/models.folder.*/

data/datasets.unused/
data/datasets/**/raw/
data/meta/
data/proc/**/raw/
data/proc/**/meta/
data/proc/**/processed/

methods/

**/.snakemake*/

# snakemake
**/.snakemake/**/*

# Recursive
**/__pycache__/
**/*.py[cod]
**/*$py.class
**/.ipynb_checkpoints/
**/.ipynb_checkpoints/**/*
**/.vscode/

# C extensions
**/*.so

# Distribution / packaging
**/.Python
**/build/
**/develop-eggs/
**/dist/
**/downloads/
**/eggs/
**/.eggs/
**/lib/
**/lib64/
**/parts/
**/sdist/
**/var/
**/wheels/
**/share/python-wheels/
**/*.egg-info/
**/.installed.cfg
**/*.egg
**/MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
**/*.manifest
**/*.spec

# Installer logs
**/pip-log.txt
**/pip-delete-this-directory.txt

# Unit test / coverage reports
**/htmlcov/
**/.tox/
**/.nox/
**/.coverage
**/.coverage.*
**/.cache
**/nosetests.xml
**/coverage.xml
**/*.cover
**/*.py,cover
**/.hypothesis/
**/.pytest

# ALLOW
!/data/datasets/ENCODE/processed/**/*
data/proc/samples.tar.gz