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ngsonto2016_august.owl
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ngsonto2016_august.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY edamontology "http://edamontology.org#" >
<!ENTITY ns1 "http://edamontology.org/" >
<!ENTITY ns32 "http://rest.phyloviz.net/" >
<!ENTITY efo "http://www.ebi.ac.uk/efo/" >
<!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY oboOther "http://purl.obolibrary.org/obo/" >
<!ENTITY dc "http://purl.org/dc/elements/1.1/" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY ns4 "http://rdf.ebi.ac.uk/terms/biosd/" >
<!ENTITY ns6 "http://rest.phyloviz.net/ontology#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY ns28 "http://www.phyloviz.net/typon/ontology.owl#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
<!ENTITY ns33 "http://rdf.ebi.ac.uk/resource/biosamples/sample/" >
<!ENTITY ns27 "http://www.phyloviz.net/typon/ontology.owl/resources/" >
]>
<rdf:RDF xmlns="http://www.semanticweb.org/owl/owlapi/turtle#"
xml:base="http://www.semanticweb.org/owl/owlapi/turtle"
xmlns:edamontology="http://edamontology.org#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:ns27="http://www.phyloviz.net/typon/ontology.owl/resources/"
xmlns:efo="http://www.ebi.ac.uk/efo/"
xmlns:ns28="http://www.phyloviz.net/typon/ontology.owl#"
xmlns:ns32="http://rest.phyloviz.net/"
xmlns:ns33="http://rdf.ebi.ac.uk/resource/biosamples/sample/"
xmlns:ns6="&ns32;ontology#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:ns1="http://edamontology.org/"
xmlns:ns4="http://rdf.ebi.ac.uk/terms/biosd/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:oboOther="http://purl.obolibrary.org/obo/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="&oboOther;ngsonto.owl">
<dc:creator xml:lang="en">"Mickael Silva"</dc:creator>
<dc:creator xml:lang="en">João Carriço</dc:creator>
<dc:title xml:lang="en">NGSOnto</dc:title>
<dc:format xml:lang="en">OWL</dc:format>
<rdfs:comment xml:lang="en">This ontology aims to describe and anotate all pipelines of a NGS process, starting from DNA extraction from an isolate to the assembled draft genome, allowing the reproducibility of the processes. nConstructed from BFO (Basic Formal Ontology), an upper level ontology (http://www.ifomis.org/bfo) and designed based on NCBI Sequence Read Archive (http://www.ncbi.nlm.nih.gov/sra) and EMBL-EBI European Nucleotide Archive (http://www.ebi.ac.uk/ena/) public data.</rdfs:comment>
<owl:imports rdf:resource="http://ifomis.uni-saarland.de/bfo/owl"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://edamontology.org#comment -->
<owl:AnnotationProperty rdf:about="&edamontology;comment"/>
<!-- http://edamontology.org#created_in -->
<owl:AnnotationProperty rdf:about="&edamontology;created_in"/>
<!-- http://edamontology.org#def -->
<owl:AnnotationProperty rdf:about="&edamontology;def"/>
<!-- http://edamontology.org#editor_note -->
<owl:AnnotationProperty rdf:about="&edamontology;editor_note"/>
<!-- http://edamontology.org#namespace -->
<owl:AnnotationProperty rdf:about="&edamontology;namespace"/>
<!-- http://edamontology.org#obsolete_alt_id -->
<owl:AnnotationProperty rdf:about="&edamontology;obsolete_alt_id"/>
<!-- http://edamontology.org#subset -->
<owl:AnnotationProperty rdf:about="&edamontology;subset"/>
<!-- http://edamontology.org#synonym -->
<owl:AnnotationProperty rdf:about="&edamontology;synonym"/>
<!-- http://edamontology.org/synonym -->
<owl:AnnotationProperty rdf:about="&ns1;synonym"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000111">
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</oboOther:IAO_0000115>
<oboOther:IAO_0000111 xml:lang="en">editor preferred label</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000112">
<rdfs:label xml:lang="en">example of usage</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</oboOther:IAO_0000115>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">example of usage</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000114">
<rdfs:label xml:lang="en">has curation status</rdfs:label>
<oboOther:IAO_0000119 xml:lang="en">OBI_0000281</oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</oboOther:IAO_0000117>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Bill Bug</oboOther:IAO_0000117>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">has curation status</oboOther:IAO_0000111>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000115">
<rdfs:label rdf:datatype="&xsd;string">definition</rdfs:label>
<rdfs:label rdf:datatype="&xsd;string">textual definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000111>definition</oboOther:IAO_0000111>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</oboOther:IAO_0000115>
<oboOther:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</oboOther:IAO_0000115>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000116">
<rdfs:label xml:lang="en">editor note</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</oboOther:IAO_0000115>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">editor note</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000117">
<rdfs:label xml:lang="en">term editor</rdfs:label>
<oboOther:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</oboOther:IAO_0000116>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</oboOther:IAO_0000115>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">term editor</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000118">
<rdfs:label xml:lang="en">alternative term</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</oboOther:IAO_0000115>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">alternative term</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000125"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000119">
<rdfs:label xml:lang="en">definition source</rdfs:label>
<oboOther:IAO_0000119 rdf:datatype="&xsd;string">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</oboOther:IAO_0000119>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">definition source</oboOther:IAO_0000111>
<oboOther:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</oboOther:IAO_0000115>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000232">
<rdfs:label xml:lang="en">curator note</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</oboOther:IAO_0000115>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">curator note</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</oboOther:IAO_0000115>
<oboOther:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></oboOther:IAO_0000119>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</oboOther:IAO_0000117>
<oboOther:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</oboOther:IAO_0000117>
<oboOther:IAO_0000111 xml:lang="en">imported from</oboOther:IAO_0000111>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000125"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_id -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_id"/>
<!-- http://purl.obolibrary.org/obo/IAO_subset -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_subset"/>
<!-- http://purl.obolibrary.org/obo/IAO_xref -->
<owl:AnnotationProperty rdf:about="&oboOther;IAO_xref"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001847 -->
<owl:AnnotationProperty rdf:about="&oboOther;OBI_0001847">
<rdfs:label xml:lang="en">ISA alternative term</rdfs:label>
<oboOther:IAO_0000111 xml:lang="en">ISA alternative term</oboOther:IAO_0000111>
<oboOther:IAO_0000117>Person: Philippe Rocca-Serra</oboOther:IAO_0000117>
<oboOther:IAO_0000117>Person: Alejandra Gonzalez-Beltran</oboOther:IAO_0000117>
<oboOther:IAO_0000119>ISA tools project (http://isa-tools.org)</oboOther:IAO_0000119>
<oboOther:IAO_0000115>An alternative term used by the ISA tools project (http://isa-tools.org).</oboOther:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&oboOther;IAO_0000118"/>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="&dc;creator"/>
<!-- http://purl.org/dc/elements/1.1/format -->
<owl:AnnotationProperty rdf:about="&dc;format"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="&dc;title"/>
<!-- http://www.ebi.ac.uk/efo/definition_editor -->
<owl:AnnotationProperty rdf:about="&efo;definition_editor"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDefinition -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasDefinition"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasExactSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="&oboInOwl;inSubset"/>
<!-- http://www.semanticweb.org/owl/owlapi/turtle#created_in -->
<owl:AnnotationProperty rdf:about="http://www.semanticweb.org/owl/owlapi/turtle#created_in"/>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="&rdfs;comment"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="&rdfs;label"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral -->
<rdfs:Datatype rdf:about="&rdf;PlainLiteral"/>
<!-- http://www.w3.org/2001/XMLSchema#boolean -->
<rdfs:Datatype rdf:about="&xsd;boolean"/>
<!-- http://www.w3.org/2001/XMLSchema#int -->
<rdfs:Datatype rdf:about="&xsd;int"/>
<!-- http://www.w3.org/2001/XMLSchema#long -->
<rdfs:Datatype rdf:about="&xsd;long"/>
<!-- http://www.w3.org/2001/XMLSchema#string -->
<rdfs:Datatype rdf:about="&xsd;string"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="&oboOther;BFO_0000051">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
<oboOther:IAO_0000111 xml:lang="en">has part</oboOther:IAO_0000111>
<oboOther:IAO_0000118 xml:lang="en">has_part</oboOther:IAO_0000118>
<oboOther:IAO_0000412 rdf:resource="&oboOther;obi.owl"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;NGS_0000006"/>
<rdf:Description rdf:about="&oboOther;OBI_0000471"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;OBI_0000066"/>
<rdf:Description rdf:about="&oboOther;OBI_0000471"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000087 -->
<owl:ObjectProperty rdf:about="&oboOther;BFO_0000087">
<rdfs:label xml:lang="en">has role</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000015 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000015">
<rdfs:label xml:lang="en">Belong To</rdfs:label>
<oboOther:IAO_0000115 xml:lang="en">Possession relation between an agent and a study or pipeline.</oboOther:IAO_0000115>
<rdfs:range rdf:resource="http://purl.org/dc/terms/Agent"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;OBI_0000066"/>
<rdf:Description rdf:about="&oboOther;OBI_0000471"/>
<rdf:Description rdf:about="&oboOther;OBI_0400103"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000020 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000020">
<rdfs:label xml:lang="en">Sequenced on</rdfs:label>
<rdfs:domain rdf:resource="&oboOther;NGS_0000072"/>
<rdfs:range rdf:resource="&oboOther;OBI_0400103"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000022 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000022">
<rdfs:label xml:lang="en">used Parameter</rdfs:label>
<rdfs:range rdf:resource="&ns1;data_2527"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;NGS_0000064"/>
<rdf:Description rdf:about="&oboOther;NGS_0000069"/>
<rdf:Description rdf:about="&oboOther;NGS_0000072"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000023 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000023">
<rdfs:label xml:lang="en">used Software</rdfs:label>
<rdfs:range rdf:resource="&oboOther;IAO_0000010"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;NGS_0000064"/>
<rdf:Description rdf:about="&oboOther;NGS_0000069"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000063 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000063">
<rdfs:label xml:lang="en">used function</rdfs:label>
<rdfs:range rdf:resource="&oboOther;IAO_0000591"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;NGS_0000064"/>
<rdf:Description rdf:about="&oboOther;NGS_0000069"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000076 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000076">
<rdfs:label xml:lang="en">execute</rdfs:label>
<rdfs:range rdf:resource="&oboOther;NGS_0000074"/>
<rdfs:domain rdf:resource="&oboOther;OBI_0000471"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000077 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000077">
<rdfs:label xml:lang="en">has protocol</rdfs:label>
<rdfs:domain rdf:resource="&oboOther;NGS_0000075"/>
<rdfs:range rdf:resource="&oboOther;OBI_0000272"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000078 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000078">
<rdfs:label xml:lang="en">has step</rdfs:label>
<rdfs:range rdf:resource="&oboOther;NGS_0000075"/>
<rdfs:domain rdf:resource="&oboOther;OBI_0500000"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000079 -->
<owl:ObjectProperty rdf:about="&oboOther;NGS_0000079">
<rdfs:label xml:lang="en">has workflow</rdfs:label>
<rdfs:domain rdf:resource="&oboOther;NGS_0000074"/>
<rdfs:range rdf:resource="&oboOther;OBI_0500000"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001950 -->
<owl:ObjectProperty rdf:about="&oboOther;OBI_0001950">
<rdfs:label xml:lang="en">has performer</rdfs:label>
<oboOther:IAO_0000111 xml:lang="en">has performer</oboOther:IAO_0000111>
<oboOther:IAO_0000117 xml:lang="en">performer relation covers the need to report on who performed a planned processed. it has to cover processes done by People or Devices (such as a robot controlled by software WF management system)</oboOther:IAO_0000117>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000428"/>
<rdfs:domain rdf:resource="&oboOther;OBI_0000011"/>
<oboOther:IAO_0000412 rdf:resource="&oboOther;obi.owl"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;NCBITaxon_9606"/>
<rdf:Description rdf:about="&oboOther;OBI_0000245"/>
<rdf:Description rdf:about="&oboOther;OBI_0000968"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboOther;BFO_0000087"/>
<owl:someValuesFrom rdf:resource="&oboOther;OBI_0000202"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002224 -->
<owl:ObjectProperty rdf:about="&oboOther;RO_0002224">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">starts with</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002230 -->
<owl:ObjectProperty rdf:about="&oboOther;RO_0002230">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">ends with</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002233 -->
<owl:ObjectProperty rdf:about="&oboOther;RO_0002233">
<rdfs:label xml:lang="en">has input</rdfs:label>
<oboOther:IAO_0000115>p has input c if either: p has direct input c or p has indirect input c. See subrelations for definitions.</oboOther:IAO_0000115>
<oboOther:IAO_0000118>consumes</oboOther:IAO_0000118>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000125"/>
<rdfs:domain rdf:resource="&oboOther;NGS_0000006"/>
<rdfs:range rdf:resource="&oboOther;NGS_0000061"/>
<oboOther:IAO_0000412 rdf:resource="&oboOther;ro.owl"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;RO_0002224"/>
<rdf:Description rdf:about="&oboOther;RO_0002233"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002234 -->
<owl:ObjectProperty rdf:about="&oboOther;RO_0002234">
<rdfs:label xml:lang="en">has output</rdfs:label>
<oboOther:IAO_0000115>p has output c if either: p has direct output c or p has output input c. See subrelations for definitions.</oboOther:IAO_0000115>
<oboOther:IAO_0000118>produces</oboOther:IAO_0000118>
<oboOther:IAO_0000114 rdf:resource="&oboOther;IAO_0000125"/>
<rdfs:domain rdf:resource="&oboOther;NGS_0000006"/>
<rdfs:range rdf:resource="&oboOther;NGS_0000061"/>
<oboOther:IAO_0000412 rdf:resource="&oboOther;ro.owl"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&oboOther;RO_0002230"/>
<rdf:Description rdf:about="&oboOther;RO_0002234"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/NGS_0000024 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000024">
<rdfs:label xml:lang="en">adaptor</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000025 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000025">
<rdfs:label xml:lang="en">ammount DNA</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000028 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000028">
<rdfs:label xml:lang="en">buffer</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000029 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000029">
<rdfs:label xml:lang="en">configuration file</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000030 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000030">
<rdfs:label xml:lang="en">end repair enzyme</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000031 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000031">
<rdfs:label xml:lang="en">extraction method</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000032 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000032">
<rdfs:label xml:lang="en">file</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000033 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000033">
<rdfs:label xml:lang="en">file extension</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000034 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000034">
<rdfs:label xml:lang="en">fragmentation method</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000038 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000038">
<rdfs:label xml:lang="en">library type</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000040 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000040">
<rdfs:label xml:lang="en">name</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000041 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000041">
<rdfs:label xml:lang="en">parameter designation</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000042 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000042">
<rdfs:label xml:lang="en">parameter value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000043 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000043">
<rdfs:label xml:lang="en">range of fragments size</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000045 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000045">
<rdfs:label xml:lang="en">reference genome</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000046 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000046">
<rdfs:label xml:lang="en">scaffolding</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000047 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000047">
<rdfs:label xml:lang="en">script file</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000048 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000048">
<rdfs:label xml:lang="en">script language</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000049 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000049">
<rdfs:label xml:lang="en">sequence coverage</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000051 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000051">
<rdfs:label xml:lang="en">size selector</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000052 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000052">
<rdfs:label xml:lang="en">software version</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000053 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000053">
<rdfs:label xml:lang="en">strategy</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000054 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000054">
<rdfs:label xml:lang="en">study description</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000055 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000055">
<rdfs:label xml:lang="en">study title</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000056 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000056">
<rdfs:label xml:lang="en">study type</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000057 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000057">
<rdfs:label xml:lang="en">tailing</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000058 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000058">
<rdfs:label xml:lang="en">uri</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000059 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000059">
<rdfs:label xml:lang="en">version</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000080 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000080">
<rdfs:label rdf:datatype="&xsd;string">date</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000081 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000081">
<rdfs:label rdf:datatype="&xsd;string">index</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000084 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000084">
<rdfs:label rdf:datatype="&xsd;string">DNA Extraction kit name</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000085 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000085">
<rdfs:label>password</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000086 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000086">
<rdfs:label xml:lang="en">Activation</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/NGS_0000087 -->
<owl:DatatypeProperty rdf:about="&oboOther;NGS_0000087">
<rdfs:label>username</rdfs:label>
</owl:DatatypeProperty>
<!-- http://xmlns.com/foaf/0.1/mbox -->
<owl:DatatypeProperty rdf:about="&foaf;mbox">
<rdfs:label xml:lang="en">mail box</rdfs:label>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://edamontology.org/data_2527 -->
<owl:Class rdf:about="&ns1;data_2527">
<rdfs:label rdf:datatype="&xsd;string">Parameter</rdfs:label>
<rdfs:label xml:lang="en">Parameter</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboOther;IAO_0000027"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboOther;NGS_0000041"/>
<owl:someValuesFrom rdf:resource="&xsd;string"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboOther;NGS_0000029"/>
<owl:someValuesFrom rdf:resource="&xsd;string"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboOther;NGS_0000042"/>
<owl:someValuesFrom rdf:resource="&xsd;string"/>
</owl:Restriction>
</rdfs:subClassOf>
<ns1:synonym>parameter</ns1:synonym>
<edamontology:subset>bioinformatics</edamontology:subset>
<edamontology:editor_note>Slightly narrower in the sense of changing the characteristics of a system/function.</edamontology:editor_note>
<edamontology:obsolete_alt_id>data:0961</edamontology:obsolete_alt_id>
<edamontology:namespace>data</edamontology:namespace>
<edamontology:synonym>Parameter</edamontology:synonym>
<edamontology:obsolete_alt_id>data:2029</edamontology:obsolete_alt_id>
<edamontology:subset>edam</edamontology:subset>
<edamontology:obsolete_alt_id>data:1773</edamontology:obsolete_alt_id>
<edamontology:synonym>Tool parameter</edamontology:synonym>
<ns1:synonym>Tool parameter</ns1:synonym>
<ns1:synonym>Parameter</ns1:synonym>
<ns1:synonym>Parameter or primitive</ns1:synonym>
<rdfs:comment xml:lang="en">"Typically a simple numerical or string value that controls the operation of a tool." [http://edamontology.org]nnhttp://edamontology.org/data_2527</rdfs:comment>
<edamontology:synonym>parameter</edamontology:synonym>
<ns1:synonym>Tool-specific parameter</ns1:synonym>
<edamontology:synonym>Tool-specific parameter</edamontology:synonym>
<edamontology:subset>data</edamontology:subset>
<edamontology:synonym>Parameter or primitive</edamontology:synonym>
<edamontology:created_in>beta12orEarlier</edamontology:created_in>
<edamontology:def>"Typically a simple numerical or string value that controls the operation of a tool." [http://edamontology.org]</edamontology:def>
<efo:definition_editor>Jon Ison</efo:definition_editor>
<oboOther:IAO_0000412 rdf:resource="&oboOther;swo.owl"/>
</owl:Class>
<!-- http://edamontology.org/operation_0310 -->
<owl:Class rdf:about="&ns1;operation_0310">
<rdfs:label rdf:datatype="&xsd;string">Sequence assembly</rdfs:label>