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Added stats.json output for metaAssembly(v1.0.7) #285

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vlilanl opened this issue Nov 14, 2024 · 0 comments · Fixed by #286
Closed
1 task done

Added stats.json output for metaAssembly(v1.0.7) #285

vlilanl opened this issue Nov 14, 2024 · 0 comments · Fixed by #286
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@vlilanl
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vlilanl commented Nov 14, 2024

stats.json is now an output for both long and short reads.

stats file contains:

{
  "scaffolds": 0,
  "contigs": 0,
  "scaf_bp": 0,
  "contig_bp": 0,
  "gap_pct": 0,
  "scaf_N50": 0,
  "scaf_L50": 0,
  "ctg_N50": 0,
  "ctg_L50": 0,
  "scaf_N90": 0,
  "scaf_L90": 0,
  "ctg_N90": 0,
  "ctg_L90": 0,
  "scaf_logsum": 0,
  "scaf_powsum": 0,
  "ctg_logsum": 0,
  "ctg_powsum": 0,
  "asm_score": 0,
  "scaf_max": 0,
  "ctg_max": 0,
  "scaf_n_gt50K": 0,
  "scaf_l_gt50K": 0,
  "scaf_pct_gt50K": 0,
  "gc_avg": 0,
  "gc_std": 0
}
  • bump version in workflow.yaml for automation and ingest to 1.0.7
@vlilanl vlilanl self-assigned this Nov 14, 2024
@vlilanl vlilanl changed the title Added stats.json output for ReadsQC (v1.0.7) Added stats.json output for metaAssembly(v1.0.7) Nov 14, 2024
@vlilanl vlilanl linked a pull request Nov 14, 2024 that will close this issue
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