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import-projects mysteriously killed partway through #328

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mbthornton-lbl opened this issue Dec 10, 2024 · 1 comment · Fixed by #329
Closed

import-projects mysteriously killed partway through #328

mbthornton-lbl opened this issue Dec 10, 2024 · 1 comment · Fixed by #329
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@mbthornton-lbl
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Command:

python nmdc_automation/run_process/run_import.py import-projects /global/homes/n/nmdcda/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/ingest_manifest.tsv configs/import.yaml.1 configs/site_configuration.toml

Tail of Log output, after importing 8 data sets

INFO:__main__:Importing nmdc:omprc-12-h5aayv46 from /global/cfs/cdirs/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/Ga0533583: 32 files
INFO:__main__:Mapping sequencing data
INFO:__main__:Mapping single data files
INFO:__main__:Mapping multiple data files
INFO:__main__:Mapping workflow executions
INFO:root:Processing Reads QC
INFO:root:Processing Metagenome Assembly
INFO:__main__:Validating imported data
INFO:__main__:Validation Passed
INFO:__main__:Applying update to sequencing data generation
INFO:__main__:Posting data to the API
INFO:__main__:Importing nmdc:omprc-12-mm525w16 from /global/cfs/cdirs/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/Ga0533584: 65 files
INFO:__main__:Mapping sequencing data
Killed
@aclum
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aclum commented Dec 13, 2024

@mbthornton-lbl ready to merge in the linked PR?

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