Upgrade pip packages and fix gym-related typing errors (#138)

* chore: Update dependencies and pyright fixes
- Remove trailing whitespace in notebook scripts
- Update dependencies: prompt-toolkit, pip, wheel, progressbar2
- Refactor CyberBattleEnv class to use np_random consistently
- Remove networkx from createstubs.sh
- Update dependencies: networkx, pytest, setuptools, pyright, plotly

---------

Co-authored-by: William Blum <[email protected]>

.github/workflows/ci.yml

@@ -27,11 +27,6 @@ jobs:
       - name: Display Python version
         run: python -c "import sys; print(sys.version)"
 
-      # - name: Use node tools
-      #   uses: actions/setup-node@v2
-      #   with:
-      #     node-version: 16.x
-
       - name: Pull pip packages from cache
         uses: actions/cache@v3
         with:
@@ -52,9 +47,6 @@ jobs:
           pip install flake8
           flake8 --benchmark
 
-      # - name: Initialize build environment
-      #   run: conda env create -f ./env.yml
-
       - uses: conda-incubator/setup-miniconda@v2
         with:
           python-version: 3.9

.pre-commit-config.yaml

@@ -12,7 +12,7 @@ repos:
             language: node
             pass_filenames: false
             types: [python]
-            additional_dependencies: ["[email protected].271"]
+            additional_dependencies: ["[email protected].374"]
 
           - id: flake8
             name: flake8

.vscode/extensions.json

@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "ms-python.flake8"
+    ]
+}

.vscode/launch.json

@@ -6,14 +6,14 @@
     "configurations": [
         {
             "name": "Python: cyberbattle_gym",
-            "type": "python",
+            "type": "debugpy",
             "request": "launch",
             "program": "src/cyberbattle_gym/samples/run.py",
             "console": "integratedTerminal"
         },
         {
             "name": "Python: Current File",
-            "type": "python",
+            "type": "debugpy",
             "request": "launch",
             "program": "${file}",
             "console": "integratedTerminal"

.vscode/settings.json

@@ -27,5 +27,10 @@
     },
     "jupyter.jupyterServerType": "local",
     "jupyter.notebookFileRoot": "${workspaceFolder}",
-    "files.trimFinalNewlines": true
+    "files.trimFinalNewlines": true,
+    "editor.defaultFormatter": "ms-python.flake8",
+    "flake8.args": [
+    ],
+    "files.trimTrailingWhitespace": true,
+
 }

createstubs.sh

@@ -28,14 +28,10 @@ mkdir -p typings/
 
 createstub pandas
 createstub plotly
-createstub progressbar
-createstub pytest
-createstub setuptools
-createstub ordered_set
 createstub asciichartpy
-createstub networkx
 createstub boolean
-createstub IPython
+
+
 echo 'Typing stub generation completed'
 
 popd