diff --git a/R-package/.Rbuildignore b/R-package/.Rbuildignore
index 3e552132cf22..9a6fec7e58d7 100644
--- a/R-package/.Rbuildignore
+++ b/R-package/.Rbuildignore
@@ -38,6 +38,7 @@ src/external_libs/fmt/.*\.md
 src/external_libs/fmt/.travis.yml
 src/external_libs/fmt/doc
 src/external_libs/fmt/support/Android\.mk
+src/external_libs/fmt/support/bazel/.bazel.*
 src/external_libs/fmt/support/.*\.gradle
 src/external_libs/fmt/support/.*\.pro
 src/external_libs/fmt/support/.*\.py
diff --git a/external_libs/compute b/external_libs/compute
index 36c89134d401..36350b7de849 160000
--- a/external_libs/compute
+++ b/external_libs/compute
@@ -1 +1 @@
-Subproject commit 36c89134d4013b2e5e45bc55656a18bd6141995a
+Subproject commit 36350b7de849300bd3d72a05d8bf890ca405a014
diff --git a/external_libs/eigen b/external_libs/eigen
index 8ba1b0f41a79..3147391d946b 160000
--- a/external_libs/eigen
+++ b/external_libs/eigen
@@ -1 +1 @@
-Subproject commit 8ba1b0f41a7950dc3e1d4ed75859e36c73311235
+Subproject commit 3147391d946bb4b6c68edd901f2add6ac1f31f8c
diff --git a/external_libs/fmt b/external_libs/fmt
index cc09f1a6798c..b6f4ceaed0a0 160000
--- a/external_libs/fmt
+++ b/external_libs/fmt
@@ -1 +1 @@
-Subproject commit cc09f1a6798c085c325569ef466bcdcffdc266d4
+Subproject commit b6f4ceaed0a0a24ccf575fab6c56dd50ccf6f1a9