build(deps): bump notebook from 7.0.3 to 7.0.6 #466
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: # This configuration does not affect the page_build event above | |
| - created | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| environment: CI | |
| services: | |
| hapi: | |
| image: "hapiproject/hapi:latest" | |
| env: | |
| hapi.fhir.default_encoding: json | |
| hapi.fhir.: json | |
| hapi.fhir.server_address: "http://127.0.0.1:8080/fhir" | |
| volumes: | |
| - hapi:/data/hapi | |
| ports: | |
| - 8080:8080 | |
| blaze: | |
| image: "samply/blaze:latest" | |
| env: | |
| JAVA_TOOL_OPTIONS: "-Xmx2g" | |
| BASE_URL: "http://127.0.0.1:8081" | |
| volumes: | |
| - blaze:/app/data | |
| ports: | |
| - 8081:8080 | |
| env: | |
| FHIR_API_URL: http://127.0.0.1:8080/fhir | |
| TRANSFER_SERVER_URL: http://127.0.0.1:8081/fhir | |
| TRANSFER_API_URL: http://127.0.0.1:8081/fhir | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: "poetry" | |
| - name: Install deps | |
| run: | | |
| poetry lock | |
| poetry install --with dev --all-extras | |
| - name: Prefill servers with data | |
| run: | | |
| poetry run python ./testing/prefill.py | |
| - name: Lint with ruff | |
| run: | | |
| poetry run ruff . | |
| - name: Tests and coverage report | |
| run: | | |
| poetry run coverage run -m pytest fhir_kindling | |
| poetry run coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| name: codecov-umbrella | |
| verbose: true | |
| - name: Build and deploy documentation | |
| run: poetry run mkdocs gh-deploy --force |