diff --git a/_pkgdown.yml b/_pkgdown.yml
index 38d2c54..9d7805f 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -4,7 +4,7 @@ navbar:
   title: "MRLocus"
   left:
     - text: "Vignette"
-      href: articles/index.html
+      href: articles/mrlocus.html
     - text: "Functions"
       href: reference/index.html
   right:
diff --git a/docs/404.html b/docs/404.html
index 9c28ec7..a2934ea 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -78,7 +78,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="articles/index.html">Vignette</a>
+  <a href="articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="reference/index.html">Functions</a>
diff --git a/docs/articles/index.html b/docs/articles/index.html
index c5bfbef..75a28d6 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -78,7 +78,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/articles/mrlocus.html b/docs/articles/mrlocus.html
index a9d77c5..a04b630 100644
--- a/docs/articles/mrlocus.html
+++ b/docs/articles/mrlocus.html
@@ -38,7 +38,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
 <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
@@ -154,7 +154,7 @@ <h1 class="hasAnchor">
 ## alpha 0.494   0.001 0.094 0.391 0.593  4586 1.001
 ## sigma 0.288   0.006 0.257 0.058 0.603  1630 1.005
 ## 
-## Samples were drawn using NUTS(diag_e) at Thu Aug 13 12:34:48 2020.
+## Samples were drawn using NUTS(diag_e) at Thu Aug 13 18:08:30 2020.
 ## For each parameter, n_eff is a crude measure of effective sample size,
 ## and Rhat is the potential scale reduction factor on split chains (at 
 ## convergence, Rhat=1).</code></pre>
diff --git a/docs/authors.html b/docs/authors.html
index 4176bf9..f3ea48f 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -78,7 +78,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="articles/index.html">Vignette</a>
+  <a href="articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="reference/index.html">Functions</a>
diff --git a/docs/index.html b/docs/index.html
index 8e567fa..fbf3128 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -40,7 +40,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
 <li>
-  <a href="articles/index.html">Vignette</a>
+  <a href="articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="reference/index.html">Functions</a>
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index b4a4713..9406842 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 1.5.1
 pkgdown_sha: ~
 articles:
   mrlocus: mrlocus.html
-last_built: 2020-08-13T16:34Z
+last_built: 2020-08-13T22:07Z
 urls:
   reference: https://mikelove.github.io/mrlocus/reference
   article: https://mikelove.github.io/mrlocus/articles
diff --git a/docs/reference/collapseHighCorSNPs.html b/docs/reference/collapseHighCorSNPs.html
index 02ef74b..412de0a 100644
--- a/docs/reference/collapseHighCorSNPs.html
+++ b/docs/reference/collapseHighCorSNPs.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/extractForSlope.html b/docs/reference/extractForSlope.html
index d492c9a..2efe033 100644
--- a/docs/reference/extractForSlope.html
+++ b/docs/reference/extractForSlope.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/fitBetaColoc.html b/docs/reference/fitBetaColoc.html
index 473bd0f..7f9ca62 100644
--- a/docs/reference/fitBetaColoc.html
+++ b/docs/reference/fitBetaColoc.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/fitSlope.html b/docs/reference/fitSlope.html
index a294277..c6c7739 100644
--- a/docs/reference/fitSlope.html
+++ b/docs/reference/fitSlope.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/flipAllelesAndGather.html b/docs/reference/flipAllelesAndGather.html
index 47594ac..9041e16 100644
--- a/docs/reference/flipAllelesAndGather.html
+++ b/docs/reference/flipAllelesAndGather.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index e35b786..58c7275 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -78,7 +78,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/makeSimDataForMrlocus.html b/docs/reference/makeSimDataForMrlocus.html
index 9b75bf9..8019cd2 100644
--- a/docs/reference/makeSimDataForMrlocus.html
+++ b/docs/reference/makeSimDataForMrlocus.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/mrlocus-package.html b/docs/reference/mrlocus-package.html
index c5445b4..719785a 100644
--- a/docs/reference/mrlocus-package.html
+++ b/docs/reference/mrlocus-package.html
@@ -91,7 +91,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/plotInitEstimates.html b/docs/reference/plotInitEstimates.html
index e6e4905..afcfff7 100644
--- a/docs/reference/plotInitEstimates.html
+++ b/docs/reference/plotInitEstimates.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>
diff --git a/docs/reference/plotMrlocus.html b/docs/reference/plotMrlocus.html
index 690ac88..bdcaf92 100644
--- a/docs/reference/plotMrlocus.html
+++ b/docs/reference/plotMrlocus.html
@@ -79,7 +79,7 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../articles/index.html">Vignette</a>
+  <a href="../articles/mrlocus.html">Vignette</a>
 </li>
 <li>
   <a href="../reference/index.html">Functions</a>