Error in preprocessing example 1 - No installed dataset found at /data/ds000114.

[jankaWIS]

Hi,

I'm trying to run in docker the first example notebook and when running this piece of code:

%%bash
datalad get -J 4 -d /data/ds000114 \
    /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \
    /data/ds000114/sub-*/ses-test/func/*fingerfootlips*

I'm getting

[ERROR] No installed dataset found at /data/ds000114. [dataset.py:require_dataset:580] (ValueError) 

The more detailed error description says:

---------------------------------------------------------------------------
CalledProcessError                        Traceback (most recent call last)
<ipython-input-1-60915a9169a6> in <module>
----> 1 get_ipython().run_cell_magic('bash', '', 'datalad get -J 4 -d /data/ds000114 \\\n    /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n    /data/ds000114/sub-*/ses-test/func/*fingerfootlips*\n')

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell)
   2360             with self.builtin_trap:
   2361                 args = (magic_arg_s, cell)
-> 2362                 result = fn(*args, **kwargs)
   2363             return result
   2364 

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell)
    140             else:
    141                 line = script
--> 142             return self.shebang(line, cell)
    143 
    144         # write a basic docstring:

<decorator-gen-110> in shebang(self, line, cell)

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k)
    185     # but it's overkill for just that one bit of state.
    186     def magic_deco(arg):
--> 187         call = lambda f, *a, **k: f(*a, **k)
    188 
    189         if callable(arg):

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magics/script.py in shebang(self, line, cell)
    243             sys.stderr.flush()
    244         if args.raise_error and p.returncode!=0:
--> 245             raise CalledProcessError(p.returncode, cell, output=out, stderr=err)
    246 
    247     def _run_script(self, p, cell, to_close):

CalledProcessError: Command 'b'datalad get -J 4 -d /data/ds000114 \\\n    /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n    /data/ds000114/sub-*/ses-test/func/*fingerfootlips*\n'' returned non-zero exit status 1.

What is going on and how can I fix it?

I'm sorry if this issue is opened somewhere else. I found only these two (#136, #165), but that's not my problem (yet :)).

Thanks!

[jankaWIS]

Update:

I get the same error when running the Preprocessing Hands-on notebook:

%%bash

datalad get -J 4 -d /data/ds000114 \

    /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \

    /data/ds000114/sub-0[234789]/ses-test/func/*fingerfootlips*

[ERROR] No installed dataset found at /data/ds000114. [dataset.py:require_dataset:580] (ValueError) 

---------------------------------------------------------------------------
CalledProcessError                        Traceback (most recent call last)
<ipython-input-1-4ab71bd7152e> in <module>
----> 1 get_ipython().run_cell_magic('bash', '', 'datalad get -J 4 -d /data/ds000114 \\\n    /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n    /data/ds000114/sub-0[234789]/ses-test/func/*fingerfootlips*\n')

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell)
   2360             with self.builtin_trap:
   2361                 args = (magic_arg_s, cell)
-> 2362                 result = fn(*args, **kwargs)
   2363             return result
   2364 

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell)
    140             else:
    141                 line = script
--> 142             return self.shebang(line, cell)
    143 
    144         # write a basic docstring:

<decorator-gen-110> in shebang(self, line, cell)

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k)
    185     # but it's overkill for just that one bit of state.
    186     def magic_deco(arg):
--> 187         call = lambda f, *a, **k: f(*a, **k)
    188 
    189         if callable(arg):

/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/IPython/core/magics/script.py in shebang(self, line, cell)
    243             sys.stderr.flush()
    244         if args.raise_error and p.returncode!=0:
--> 245             raise CalledProcessError(p.returncode, cell, output=out, stderr=err)
    246 
    247     def _run_script(self, p, cell, to_close):

CalledProcessError: Command 'b'datalad get -J 4 -d /data/ds000114 \\\n    /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n    /data/ds000114/sub-0[234789]/ses-test/func/*fingerfootlips*\n'' returned non-zero exit status 1.