forked from petsc/petsc
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathmakefile
525 lines (476 loc) · 26.2 KB
/
makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
#
# This is the makefile for compiling PETSc. See
# http://www.mcs.anl.gov/petsc/documentation/installation.html for directions on installing PETSc.
# See also conf for additional commands.
#
ALL: all
LOCDIR = ./
DIRS = src include tutorials interfaces share/petsc/matlab
# next line defines PETSC_DIR and PETSC_ARCH if they are not set
include ././${PETSC_ARCH}/lib/petsc/conf/petscvariables
include ${PETSC_DIR}/lib/petsc/conf/variables
include ${PETSC_DIR}/lib/petsc/conf/rules
include ${PETSC_DIR}/lib/petsc/conf/test.common
# This makefile contains a lot of PHONY targets with improperly specified prerequisites
# where correct execution instead depends on the targets being processed in the correct
# order. This is gross, but this makefile doesn't really do any work. Sub-makes still
# benefit from parallelism.
.NOTPARALLEL:
OMAKE_SELF = $(OMAKE) -f makefile
OMAKE_SELF_PRINTDIR = $(OMAKE_PRINTDIR) -f makefile
#
# Basic targets to build PETSc libraries.
#
all:
+@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} chk_petscdir chk_upgrade | tee ${PETSC_ARCH}/lib/petsc/conf/make.log
@ln -sf ${PETSC_ARCH}/lib/petsc/conf/make.log make.log
+@(${OMAKE_SELF_PRINTDIR} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} all-local; echo "$$?" > ${PETSC_ARCH}/lib/petsc/conf/error.log) 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log
+@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then \
grep -E '(out of memory allocating.*after a total of|gfortran: fatal error: Killed signal terminated program f951|f95: fatal error: Killed signal terminated program f951)' ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log > /dev/null; \
if test -s ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log; then \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, you need to increase the memory allocated to the VM and rerun " 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
else \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, check ${PETSC_ARCH}/lib/petsc/conf/make.log" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Send it and ${PETSC_ARCH}/lib/petsc/conf/configure.log to [email protected]" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
fi \
else \
${OMAKE_SELF} print_mesg_after_build PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log ;\
fi #solaris make likes to print the whole command that gave error. So split this up into the smallest chunk below
@echo "Finishing make run at `date +'%a, %d %b %Y %H:%M:%S %z'`" >> ${PETSC_ARCH}/lib/petsc/conf/make.log
@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then exit 1; fi
all-local: info libs matlabbin petsc4py-build libmesh-build mfem-build slepc-build hpddm-build amrex-build bamg-build
#
# Prints information about the system and version of PETSc being compiled
#
info:
-@echo "=========================================="
-@echo " "
-@echo "See documentation/faq.html and documentation/bugreporting.html"
-@echo "for help with installation problems. Please send EVERYTHING"
-@echo "printed out below when reporting problems. Please check the"
-@echo "mailing list archives and consider subscribing."
-@echo " "
-@echo " https://petsc.org/release/community/mailing/"
-@echo " "
-@echo "=========================================="
-@echo Starting make run on `hostname` at `date +'%a, %d %b %Y %H:%M:%S %z'`
-@echo Machine characteristics: `uname -a`
-@echo "-----------------------------------------"
-@echo "Using PETSc directory: ${PETSC_DIR}"
-@echo "Using PETSc arch: ${PETSC_ARCH}"
-@echo "-----------------------------------------"
-@grep "define PETSC_VERSION" ${PETSC_DIR}/include/petscversion.h | ${SED} "s/........//"
-@echo "-----------------------------------------"
-@echo "Using configure Options: ${CONFIGURE_OPTIONS}"
-@echo "Using configuration flags:"
-@grep "\#define " ${PETSCCONF_H}
-@echo "-----------------------------------------"
-@echo "Using C compile: ${PETSC_CCOMPILE_SINGLE}"
-@if [ "${MPICC_SHOW}" != "" ]; then \
printf "mpicc -show: %b\n" "${MPICC_SHOW}";\
fi; \
printf "C compiler version: %b\n" "${C_VERSION}"; \
if [ "${CXX}" != "" ]; then \
echo "Using C++ compile: ${PETSC_CXXCOMPILE_SINGLE}";\
if [ "${MPICXX_SHOW}" != "" ]; then \
printf "mpicxx -show: %b\n" "${MPICXX_SHOW}"; \
fi;\
printf "C++ compiler version: %b\n" "${Cxx_VERSION}"; \
fi
-@if [ "${FC}" != "" ]; then \
echo "Using Fortran compile: ${PETSC_FCOMPILE_SINGLE}";\
if [ "${MPIFC_SHOW}" != "" ]; then \
printf "mpif90 -show: %b\n" "${MPIFC_SHOW}"; \
fi; \
printf "Fortran compiler version: %b\n" "${FC_VERSION}"; \
fi
-@if [ "${CUDAC}" != "" ]; then \
echo "Using CUDA compile: ${PETSC_CUCOMPILE_SINGLE}";\
fi
-@if [ "${CLANGUAGE}" = "CXX" ]; then \
echo "Using C++ compiler to compile PETSc";\
fi
-@echo "-----------------------------------------"
-@echo "Using C/C++ linker: ${PCC_LINKER}"
-@echo "Using C/C++ flags: ${PCC_LINKER_FLAGS}"
-@if [ "${FC}" != "" ]; then \
echo "Using Fortran linker: ${FC_LINKER}";\
echo "Using Fortran flags: ${FC_LINKER_FLAGS}";\
fi
-@echo "-----------------------------------------"
-@echo "Using system modules: ${LOADEDMODULES}"
-@if [ "${MPI_IS_MPIUNI}" = "1" ]; then \
echo Using mpi.h: mpiuni; \
else \
TESTDIR=`mktemp -q -d -t petscmpi-XXXXXXXX` && \
echo '#include <mpi.h>' > $${TESTDIR}/mpitest.c && \
BUF=`${CPP} ${PETSC_CPPFLAGS} ${PETSC_CC_INCLUDES} $${TESTDIR}/mpitest.c |grep 'mpi\.h' | ( head -1 ; cat > /dev/null )` && \
echo Using mpi.h: $${BUF}; ${RM} -rf $${TESTDIR}; \
fi
-@echo "-----------------------------------------"
-@echo "Using libraries: ${PETSC_LIB}"
-@echo "------------------------------------------"
-@echo "Using mpiexec: ${MPIEXEC}"
-@echo "------------------------------------------"
-@echo "Using MAKE: $(MAKE)"
-@echo "Using MAKEFLAGS: -j$(MAKE_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)"
-@echo "=========================================="
#
# Build MatLab binaries
#
matlabbin:
-@if [ "${MATLAB_MEX}" != "" -a "${MATLAB_SOCKET}" != "" -a "${PETSC_SCALAR}" = "real" -a "${PETSC_PRECISION}" = "double" ]; then \
echo "BEGINNING TO COMPILE MATLAB INTERFACE"; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc; fi; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab; fi; \
cd src/sys/classes/viewer/impls/socket/matlab && ${OMAKE_SELF} matlabcodes PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR}; \
echo "========================================="; \
fi
#
# Builds PETSc check examples for a given architecture
#
RUN_TEST = ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff
check_install: check
check:
-@echo "Running check examples to verify correct installation"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@if [ "${PETSC_WITH_BATCH}" != "" ]; then \
echo "Running with batch filesystem, cannot run make check"; \
elif [ "${MPIEXEC}" = "/bin/false" ]; then \
echo "*mpiexec not found*. cannot run make check"; \
else \
${RM} -f check_error;\
${RUN_TEST} PETSC_OPTIONS="${PETSC_OPTIONS} ${PETSC_TEST_OPTIONS}" PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" check_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/check.log; \
if [ -f check_error ]; then \
echo "Error while running make check"; \
${RM} -f check_error;\
exit 1; \
fi; \
${RM} -f check_error;\
fi;
check_build:
+@cd src/snes/tutorials >/dev/null; ${RUN_TEST} clean-legacy
+@cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19
+@if [ ! "${MPI_IS_MPIUNI}" ]; then cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19_mpi; fi
+@if [ "${HYPRE_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ]; then \
if [ "${CUDA_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_cuda; \
elif [ "${HIP_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_hip; \
else HYPRE_TEST=runex19_hypre; fi; \
cd src/snes/tutorials >/dev/null; ${RUN_TEST} $${HYPRE_TEST}; \
fi;
+@if [ "${CUDA_LIB}" != "" ]; then \
cd src/snes/tutorials >/dev/null; ${RUN_TEST} runex19_cuda; \
fi;
+@if [ "${MPI_IS_MPIUNI}" = "" ]; then \
cd src/snes/tutorials >/dev/null; \
if [ "${KOKKOS_KERNELS_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ] && [ "${PETSC_PRECISION}" = "double" ]; then \
${RUN_TEST} runex3k_kokkos; \
fi;\
if [ "${MUMPS_LIB}" != "" ]; then \
${RUN_TEST} runex19_fieldsplit_mumps; \
fi;\
if [ "${SUITESPARSE_LIB}" != "" ]; then \
${RUN_TEST} runex19_suitesparse; \
fi;\
if [ "${SUPERLU_DIST_LIB}" != "" ]; then \
${RUN_TEST} runex19_superlu_dist; \
fi;\
if ( [ "${ML_LIB}" != "" ] || [ "${TRILINOS_LIB}" != "" ] ); then \
${RUN_TEST} runex19_ml; \
fi; \
${RUN_TEST} clean-legacy; \
cd - > /dev/null; \
if ( [ "${AMREX_LIB}" != "" ] && [ "${CUDA_LIB}" = "" ] ); then \
echo "Running amrex test example to verify correct installation";\
echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}";\
cd src/ksp/ksp/tutorials/amrex >/dev/null;\
${RUN_TEST} clean-legacy; \
${RUN_TEST} testamrex; \
${RUN_TEST} clean-legacy; \
cd - > /dev/null; \
fi;\
fi;
+@if [ "${HDF5_LIB}" != "" ]; then \
cd src/vec/vec/tests >/dev/null;\
${RUN_TEST} clean-legacy; \
${RUN_TEST} runex47; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "${MPI4PY}" = "yes" ]; then \
cd src/sys/tests >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex55; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "${PETSC4PY}" = "yes" ]; then \
cd src/ksp/ksp/tutorials >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex100; \
${RUN_TEST} clean-legacy; \
fi;
+@grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/snes/tutorials >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex5f; \
${RUN_TEST} clean-legacy; \
fi; ${RM} .ftn.log;
+@grep -E "^#define PETSC_HAVE_MATLAB 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/vec/vec/tutorials >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex31; \
${RUN_TEST} clean-legacy; \
fi; ${RM} .ftn.log;
-@echo "Completed test examples"
check_usermakefile:
-@echo "Testing compile with user makefile"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@cd src/snes/tutorials; ${RUN_TEST} clean-legacy
@cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex19
@grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex5f; \
fi; ${RM} .ftn.log;
@cd src/snes/tutorials; ${RUN_TEST} clean-legacy
-@echo "Completed compile with user makefile"
checkgitclean:
@if ! git diff --quiet; then \
echo "The repository has uncommitted files, cannot run checkclangformat" ;\
git status -s --untracked-files=no ;\
false;\
fi;
checkclangformatversion:
@version=`clang-format --version | cut -d" " -f3 | cut -d"." -f 1` ;\
if [ "$$version" == "version" ]; then version=`clang-format --version | cut -d" " -f4 | cut -d"." -f 1`; fi;\
if [ $$version != 15 ]; then echo "Require clang-format version 15! Currently used clang-format version is $$version" ;false ; fi
# Check that all the source code in the repository satisfies the .clang_format
checkclangformat: checkclangformatversion checkgitclean clangformat
@if ! git diff --quiet; then \
printf "The current commit has source code formatting problems\n" ;\
if [ -z "${CI_PIPELINE_ID}" ]; then \
printf "Please run 'git diff' to check\n"; \
git diff --stat; \
else \
git diff --patch-with-stat > ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch; \
git diff --patch-with-stat --color=always | head -1000; \
if [ `wc -l < ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch` -gt 1000 ]; then \
printf "The diff has been trimmed, check ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch (in CI artifacts) for all changes\n"; \
fi;\
fi;\
false;\
fi;
# Compare ABI/API of two versions of PETSc library with the old one defined by PETSC_{DIR,ARCH}_ABI_OLD
abitest:
@if [ "${PETSC_DIR_ABI_OLD}" = "" ] || [ "${PETSC_ARCH_ABI_OLD}" = "" ]; \
then printf "You must set environment variables PETSC_DIR_ABI_OLD and PETSC_ARCH_ABI_OLD to run abitest\n"; \
exit 1; \
fi;
-@echo "Comparing ABI/API of the following two PETSc versions (you must have already configured and built them using GCC and with -g):"
-@echo "========================================================================================="
-@echo " Old: PETSC_DIR_ABI_OLD = ${PETSC_DIR_ABI_OLD}"
-@echo " PETSC_ARCH_ABI_OLD = ${PETSC_ARCH_ABI_OLD}"
-@pushd ${PETSC_DIR_ABI_OLD} >> /dev/null ; echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo " New: PETSC_DIR = ${PETSC_DIR}"
-@echo " PETSC_ARCH = ${PETSC_ARCH}"
-@echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo "========================================================================================="
-@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/abicheck.py -old_dir ${PETSC_DIR_ABI_OLD} -old_arch ${PETSC_ARCH_ABI_OLD} -new_dir ${PETSC_DIR} -new_arch ${PETSC_ARCH} -report_format html
# Compare ABI/API of current PETSC_ARCH/PETSC_DIR with a previous branch
abitestcomplete:
-@if [[ -f "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log" ]]; then \
OPTIONS=`grep -h -m 1 "Configure Options: " ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log | sed "s!Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions!!g"` ;\
echo $${OPTIONS} ;\
fi ; \
if [[ "${PETSC_DIR_ABI_OLD}" != "" ]]; then \
PETSC_DIR_OLD=${PETSC_DIR_ABI_OLD}; \
else \
PETSC_DIR_OLD=${PETSC_DIR}/../petsc-abi; \
fi ; \
echo "=================================================================================================" ;\
echo "Doing ABI/API comparison between" ${branch} " and " `git rev-parse --abbrev-ref HEAD` "using " $${OPTIONS} ;\
echo "=================================================================================================" ;\
if [[ ! -d $${PETSC_DIR_OLD} ]]; then \
git clone ${PETSC_DIR} $${PETSC_DIR_OLD} ; \
else \
cd $${PETSC_DIR_OLD} ; \
git pull ; \
fi ; \
cd $${PETSC_DIR_OLD} ; \
git checkout ${branch} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` ./configure $${OPTIONS} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` make all test ; \
cd ${PETSC_DIR} ; \
./configure $${OPTIONS}; \
make all test ; \
PETSC_DIR_ABI_OLD=$${PETSC_DIR_OLD} PETSC_ARCH_ABI_OLD=arch-branch-`git rev-parse ${branch}` make abitest
# Deletes PETSc libraries
deletelibs:
-${RM} -rf ${PETSC_LIB_DIR}/libpetsc*.*
deletemods:
-${RM} -f ${PETSC_DIR}/${PETSC_ARCH}/include/petsc*.mod
allclean:
-@${OMAKE} -f gmakefile clean
clean:: allclean
distclean: chk_petscdir
@if [ -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ]; then \
echo "*** Preserving ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py in ${PETSC_DIR} ***"; \
mv -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ${PETSC_DIR}/; fi
@echo "*** Deleting all build files in ${PETSC_DIR}/${PETSC_ARCH} ***"
-${RM} -rf ${PETSC_DIR}/${PETSC_ARCH}/
#
reconfigure: allclean
@unset MAKEFLAGS && ${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py
#
install:
@${PYTHON} ./config/install.py -destDir=${DESTDIR}
+${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install
mpistreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistreams
mpistream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistream
openmpstreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstreams
openmpstream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstream
# for legacy reasons
stream: mpistream
streams: mpistreams
# ------------------------------------------------------------------
#
# All remaining actions are intended for PETSc developers only.
# PETSc users should not generally need to use these commands.
#
# See the users manual for how the tags files may be used from Emacs and Vi/Vim
#
alletags:
-@${PYTHON} lib/petsc/bin/maint/generateetags.py
-@find config -type f -name "*.py" |grep -v SCCS | xargs etags -o TAGS_PYTHON
# obtain gtags from https://www.gnu.org/software/global/
allgtags:
-@find ${PETSC_DIR}/include ${PETSC_DIR}/src -regex '\(.*makefile\|.*\.\(cc\|hh\|cpp\|cxx\|C\|hpp\|c\|h\|cu\|m\)$$\)' | grep -v ftn-auto | gtags -f -
allfortranstubs:
-@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir
@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py ${BFORT} ${VERBOSE}
-@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py -merge ${VERBOSE}
-@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir
deletefortranstubs:
-@find . -type d -name ftn-auto | xargs rm -rf
# Build just manual pages + prerequisites
# Also builds citations
hloc=include/petsc/private
allmanpages: chk_loc deletemanualpages
-echo " /* SUBMANSEC = PetscH */ " > ${hloc}/generated_khash.h
-sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h
-sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h
-sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h
-sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h
-sed -e 's?<T>?IV?g' -e 's?<t>?iv?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscScalar?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h
-sed -e 's?<T>?Obj?g' -e 's?<t>?obj?g' -e 's?<KeyType>?PetscInt64?g' -e 's?<ValType>?PetscObject?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h
-${RM} ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err
-${OMAKE_SELF} ACTION=manualpages tree_src LOC=${LOC}
-@sed -e s%man+../%man+manualpages/% ${LOC}/docs/manualpages/manualpages.cit > ${LOC}/docs/manualpages/htmlmap
-@cat ${PETSC_DIR}/doc/classic/mpi.www.index >> ${LOC}/docs/manualpages/htmlmap
cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err
a=`cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err | wc -l`; test ! $$a -gt 0
# Build just manual examples + prerequisites
allmanexamples: chk_loc allmanpages
-${OMAKE_SELF} ACTION=manexamples tree_basic LOC=${LOC}
# Build all classic docs except html sources
alldoc1: chk_loc allmanpages allmanexamples
-${OMAKE_SELF} manimplementations LOC=${LOC}
-${PYTHON} lib/petsc/bin/maint/wwwindex.py ${PETSC_DIR} ${LOC}
# Builds .html versions of the source
# html overwrites some stuff - hence this is done later.
alldoc2: chk_loc allmanpages
-${OMAKE_SELF} ACTION=html PETSC_DIR=${PETSC_DIR} alltree LOC=${LOC}
# A version which presumes allmanpages has already been run
alldoc_post: chk_loc
-${OMAKE_SELF} ACTION=html PETSC_DIR=${PETSC_DIR} alltree LOC=${LOC}
alldocclean: deletemanualpages allcleanhtml
# Deletes man pages (.md version)
deletemanualpages: chk_loc
-@if [ -d ${LOC} -a -d ${LOC}/docs/manualpages ]; then \
find ${LOC}/docs/manualpages -type f -name "*.md" -exec ${RM} {} \; ;\
${RM} ${LOC}/docs/manualpages/manualpages.cit ;\
fi
allcleanhtml:
-${OMAKE_SELF} ACTION=cleanhtml PETSC_DIR=${PETSC_DIR} alltree
# Builds simple html versions of the source without links into the $PETSC_ARCH/obj directory, used by make mergegcov
srchtml:
-${OMAKE_SELF} ACTION=simplehtml PETSC_DIR=${PETSC_DIR} alltree_src
###########################################################
# targets to build distribution and update docs
###########################################################
# Creates ${HOME}/petsc.tar.gz [and petsc-with-docs.tar.gz]
dist:
${PETSC_DIR}/lib/petsc/bin/maint/builddist ${PETSC_DIR} main
###########################################################
#
# See script for details
#
gcov:
-output_file_base_name=${PETSC_ARCH}-gcovr-report.json; \
petsc_arch_dir=${PETSC_DIR}/${PETSC_ARCH}; \
pushd $${petsc_arch_dir}/obj && \
gcovr --json --output $${petsc_arch_dir}/$${output_file_base_name} --exclude-throw-branches --exclude-unreachable-branches -j 4 --gcov-executable ${PETSC_COVERAGE_EXEC} --root ${PETSC_DIR} . ${PETSC_GCOV_OPTIONS} && \
${RM} -f $${petsc_arch_dir}/$${output_file_base_name}.tar.gz && \
tar -czf $${petsc_arch_dir}/$${output_file_base_name}.tar.gz -C $${petsc_arch_dir} ./$${output_file_base_name} && \
${RM} $${petsc_arch_dir}/$${output_file_base_name}; \
popd
mergegcov:
$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --merge-branch `lib/petsc/bin/maint/check-merge-branch.sh` --html --xml ${PETSC_GCOV_OPTIONS}
#
# -------------------------------------------------------------------------------
#
# Some macros to check if the fortran interface is up-to-date.
#
countfortranfunctions:
-@cd ${PETSC_DIR}/src/fortran; grep -E '^void' custom/*.c auto/*.c | \
cut -d'(' -f1 | tr -s ' ' | cut -d' ' -f2 | uniq | grep -E -v "(^$$|Petsc)" | \
sed "s/_$$//" | sort > /tmp/countfortranfunctions
countcfunctions:
-@grep PETSC_EXTERN ${PETSC_DIR}/include/*.h | grep "(" | tr -s ' ' | \
cut -d'(' -f1 | cut -d' ' -f3 | grep -v "\*" | tr -s '\012' | \
tr 'A-Z' 'a-z' | sort | uniq > /tmp/countcfunctions
difffortranfunctions: countfortranfunctions countcfunctions
-@echo -------------- Functions missing in the fortran interface ---------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^<" | cut -d' ' -f2
-@echo ----------------- Functions missing in the C interface ------------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^>" | cut -d' ' -f2
-@${RM} /tmp/countcfunctions /tmp/countfortranfunctions
checkbadfortranstubs:
-@echo "========================================="
-@echo "Functions with MPI_Comm as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'MPI_Comm' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with a String as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'char \*' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with Pointers to PETSc Objects as Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; \
_p_OBJ=`grep _p_ ${PETSC_DIR}/include/*.h | tr -s ' ' | \
cut -d' ' -f 3 | tr -s '\012' | grep -v '{' | cut -d'*' -f1 | \
sed "s/_p_//g" | tr -s '\012 ' ' *|' ` ; \
for OBJ in $$_p_OBJ; do \
grep "$$OBJ \*" *.c | tr -s ' ' | tr -s ':' ' ' | \
cut -d'(' -f1 | cut -d' ' -f1,3; \
done
checkpackagetests:
-@echo "Missing package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`ls *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(with-$${j}|download-$${j})" configexamples | grep -v "=0" | wc -l ; done
-@echo "Missing download package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`grep -l "download " *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(download-$${j})" configexamples | grep -v "=0" | wc -l ; done
.PHONY: info info_h all deletelibs allclean update \
alletags etags etags_complete etags_noexamples etags_makefiles etags_examples etags_fexamples alldoc allmanpages \
allcleanhtml countfortranfunctions \
start_configure configure_petsc configure_clean matlabbin install