From 426e63fe402e6492e0baf10441cf8ea3729d8ca6 Mon Sep 17 00:00:00 2001
From: Maximilian Muecke <muecke.maximilian@gmail.com>
Date: Tue, 6 Feb 2024 11:32:47 +0100
Subject: [PATCH] chore: update precommit

---
 .pre-commit-config.yaml | 61 +++++++++++++++++++++++++++++------------
 1 file changed, 43 insertions(+), 18 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 5ab490a4..bf0f7dc0 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,22 +1,47 @@
 # All available hooks: https://pre-commit.com/hooks.html
+# R specific hooks: https://github.com/lorenzwalthert/precommit
 repos:
--   repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.1.2
+  - repo: https://github.com/lorenzwalthert/precommit
+    rev: v0.4.0
     hooks:
-    # any R project
-    -   id: style-files
-        args: [--style_pkg=styler, --style_fun=mlr_style] # install with remotes::install_github("pat-s/styler@mlr-style")
-    # -   id: lintr
-    -   id: parsable-R
-    -   id: no-browser-statement
-    -   id: readme-rmd-rendered
-    #  R package development
-    -   id: roxygenize
-    -   id: use-tidy-description
-    #-   id: deps-in-desc
-        args: [--allow_private_imports]
--   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.1.0
+      - id: style-files
+        args: [--style_pkg=styler.mlr, --style_fun=mlr_style]
+        additional_dependencies:
+          - mlr-org/styler.mlr
+      - id: roxygenize
+        additional_dependencies:
+        - backports
+        - checkmate
+        - clue
+        - fpc
+        - cluster
+        - data.table
+        - mlr3misc
+        - paradox
+        - R6
+      # codemeta must be above use-tidy-description when both are used
+      - id: use-tidy-description
+      - id: readme-rmd-rendered
+      - id: parsable-R
+      - id: no-browser-statement
+      - id: deps-in-desc
+        exclude: data-raw|inst
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0
     hooks:
-    -   id: check-added-large-files
-        args: ['--maxkb=200']
+      - id: check-added-large-files
+        args: [--maxkb=200]
+      - id: file-contents-sorter
+        files: '^\.Rbuildignore$'
+      - id: end-of-file-fixer
+        exclude: '\.Rd'
+  - repo: local
+    hooks:
+      - id: forbid-to-commit
+        name: Don't commit common R artifacts
+        entry: Cannot commit .Rhistory, .RData, .Rds or .rds.
+        language: fail
+        files: '\.Rhistory|\.RData|\.Rds|\.rds$'
+        # `exclude: <regex>` to allow committing specific files.
+ci:
+  autoupdate_schedule: monthly