2023-06-04-upschulte23a.md

title	booktitle	year	volume	series	month	publisher	pdf	url	abstract	layout	issn	id	tex_title	firstpage	lastpage	page	order	cycles	bibtex_editor	editor	bibtex_author	author	date	address	container-title	genre	issued	extras
Uncertainty-Aware Contour Proposal Networks for Cell Segmentation in Multi-Modality High-Resolution Microscopy Images	Proceedings of the NeurIPS Challenge on Cell Segmentation in Muliti-modality Microscopy Images	2022	212	Proceedings of Machine Learning Research	0	PMLR	https://proceedings.mlr.press/v212/upschulte23a/upschulte23a.pdf	https://proceedings.mlr.press/212/upschulte22.html	We present a simple framework for cell segmentation, based on uncertainty-aware Contour Proposal Networks (CPNs). It is designed to provide high segmentation accuracy while remaining computationally efficient, which makes it an ideal solution for high throughput microscopy applications. Each predicted cell is provided with four uncertainty estimations that give information about the localization accuracy of the detected cell boundaries. Such additional insights are valuable for downstream single-cell analysis in microscopy image-based biology and biomedical research. In the context of the NeurIPS 22 Cell Segmentation Challenge, the proposed solution is shown to generalize well in a multi-modality setting, while respecting domain-specific requirements such as focusing on specific cell types. Without an ensemble or test-time augmentation the method achieves an F1 score of 0.8986 on the challenge’s validation set.	inproceedings	2640-3498	upschulte23a	Uncertainty-Aware Contour Proposal Networks for Cell Segmentation in Multi-Modality High-Resolution Microscopy Images	1	12	1-12	1	false	Ma, Jun and Xie, Ronald and Gupta, Anubha and Guilherme de Almeida, Jos\'e and Bader, Gary D. and Wang, Bo	given family Jun Ma given family Ronald Xie given family Anubha Gupta given family prefix José Almeida Guilherme de given family Gary D. Bader given family Bo Wang	Upschulte, Eric and Harmeling, Stefan and Amunts, Katrin and Dickscheid, Timo	given family Eric Upschulte given family Stefan Harmeling given family Katrin Amunts given family Timo Dickscheid	2023-06-04		Proceedings of The Cell Segmentation Challenge in Multi-modality High-Resolution Microscopy Images	inproceedings	date-parts 2023 6 4