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paolafer wants to merge 180 commits intommkekic:mastermmkekic/IC:masterfrom paolafer:new-citypaolafer/IC:new-cityCopy head branch name to clipboard

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Commits

Commits on Jul 31, 2019

• 663 Upload DB

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  carmenromo

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  jmbenlloch

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  9f10f96

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Commits on Aug 1, 2019

• Increase string length for creator process, according to nexus.

  paolafer

  committed
  d63a51b

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Commits on Aug 2, 2019

• Use new file for failing test.

  paolafer

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• Cosmetics

  andLaing

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Commits on Aug 12, 2019

• 664 Increase string length for creator process, according to nexus

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  andLaing

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  bpalmeiro

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  bdd35f6

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Commits on Sep 19, 2019

• 669 Upload database

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  carmenromo

  committed
  4d0253a

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Commits on Oct 17, 2019

• 670 Upload DB with new gain values from run 7572

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  carmenromo

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Commits on Oct 21, 2019

• Add functions to read only MC hits, to speed up loading file.

  paolafer

  committed
  b34721a

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• Use the new function in load_mchits.

  paolafer

  committed
  38e7861

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• Fix type hint in read_mchit_evt function.

  paolafer

  committed
  36cf1e7

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• Reuse existing function, with an additional flag.

  paolafer

  committed
  0de434a

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• Reorganize code to make it more efficient.

  paolafer

  committed
  e9415fe

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• Add type hint.

  paolafer

  committed
  3420d4f

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• 654 Merge branch 'new-load-mc-hit-function'

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  mmkekic

  authored and

  carmenromo

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  a065eba

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Commits on Nov 6, 2019

• Speed up corrections application

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  gonzaponte

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Commits on Nov 7, 2019

• 673 Speed up corrections application

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  mmkekic

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  carmenromo

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  1bff7ba

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Commits on Nov 8, 2019

• Change tests for modified Esmeralda

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  mmkekic

  authored and

  gonzaponte

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  cf24493

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• Modify Esmeralda to pass tests

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  mmkekic

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  gonzaponte

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  8fdbd2a

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• Add test eventinfo table contains all events

  

  mmkekic

  authored and

  gonzaponte

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  9cf3327

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• Write event info and mc info without filtering in Esmeralda.

  

  mmkekic

  authored and

  gonzaponte

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  0405a57

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• Add test for load_event_summary in dst_functions.

  

  mmkekic

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  gonzaponte

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  50b5b06

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• Add load_event_summary in dst_functions

  

  mmkekic

  authored and

  gonzaponte

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  e5bf583

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• Remove norm_strat from Esmeralda; hard code to 'kr'

  

  mmkekic

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  gonzaponte

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  5cf6edd

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• Add check for no-filter MC events inside table in esmeralda_test.

  

  mmkekic

  authored and

  gonzaponte

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  413157c

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• Remove time from PAOLINA/Summary in esmeralda

  

  mmkekic

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  gonzaponte

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  3fb9a69

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• Add time from Run/events to load_event_summary DataFrame output

  

  mmkekic

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  gonzaponte

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  7d76ab3

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• Cast to HitsCollection type only current event in esmeralda reader.

  

  mmkekic

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  gonzaponte

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  75aff0b

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• Add test to show bug in overlap_blob_energy in esmeralda_test

  

  mmkekic

  authored and

  gonzaponte

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  ee5c12c

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• Fix bug in overlap_blob_energy in esmeralda

  

  mmkekic

  authored and

  gonzaponte

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  5be3d26

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• Add test to show repeated indices in load_dsts and a fix.

  

  mmkekic

  authored and

  gonzaponte

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  b885ffe

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• Adapt track_blob_info_extractor for hits with nan energy

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  mmkekic

  authored and

  gonzaponte

  committed
  6346613

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• Add 'out_of_map' flag in sumamry table.

  

  mmkekic

  authored and

  gonzaponte

  committed
  dbe8f2b

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• Adapt Esmeralda body for changed filtering of events

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  mmkekic

  authored and

  gonzaponte

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  cf3ad14

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• Fix names in tests, adapts out_of_map test dataframe comparison

  

  mmkekic

  authored and

  gonzaponte

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  8d877dd

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• Add 'out_of_map' flag assertation for test out_of_map_hits

  

  mmkekic

  authored and

  gonzaponte

  committed
  51b569f

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• Add new test file and exact test comparison for esmeralda

  

  mmkekic

  authored and

  gonzaponte

  committed
  9a99880

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• Change test file in test load_event_summary.

  

  mmkekic

  authored and

  gonzaponte

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  5126d45

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• Add comments in load_event_summary

  

  mmkekic

  authored and

  gonzaponte

  committed
  f09d953

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• Remove unnecesarry serial mark from tests.

  

  mmkekic

  authored and

  gonzaponte

  committed
  62ec5b5

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• Remove option to run Esmeralda with uncorrected energy.

  

  mmkekic

  authored and

  gonzaponte

  committed
  67f8a5d

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• Rename threshold parameters in esmeralda.config

  

  mmkekic

  authored and

  gonzaponte

  committed
  3806324

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• Add r_max and r_ave in tracks table

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  mmkekic

  authored and

  gonzaponte

  committed
  f9cc526

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• Adapt test for different PAOLINA/Tracks table structure

  

  mmkekic

  authored and

  gonzaponte

  committed
  307387a

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• Remove MC and event_info check in test with out_of_map_hits.

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  mmkekic

  authored and

  gonzaponte

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• Cosmetics

  

  mmkekic

  authored and

  gonzaponte

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  3006400

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• Restructure and rename load_paolina_summary.

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  mmkekic

  authored and

  gonzaponte

  committed
  51d4633

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• Add test for list of files as input for load_paolina_summary.

  

  mmkekic

  authored and

  gonzaponte

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  9f81255

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• Replace file for Esmeralda exact table comparison

  

  mmkekic

  authored and

  gonzaponte

  committed
  735f202

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• Add get_track_energy to paolina functions and corresponding test

  

  mmkekic

  authored and

  gonzaponte

  committed
  4981484

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• Use get_track_energy from paolina_functions in Esmeralda

  

  mmkekic

  authored and

  gonzaponte

  committed
  d69c52a

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• Prettyfy esmeralda a la Gonzalo.

  

  mmkekic

  authored and

  gonzaponte

  committed
  72ba0cb

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• Prettify esmeralda_test a la Gonzalo

  

  mmkekic

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  gonzaponte

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  ee0540a

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• 672 Modify esmeralda

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  gonzaponte

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  carmenromo

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  1bb47a5

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Commits on Nov 11, 2019

• Add test drop_voxel not depends on voxel order.

  mmkekic

  committed
  62e4f2c

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• Change drop_voxel to redistribute energy to closest voxels.

  mmkekic

  committed
  1906309

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• Change exact comparison to np.isclose in merge_NN_hits.

  mmkekic

  committed
  119efd6

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• Change energies of voxels_without_hits fixture.

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  mmkekic

  committed
  96d87e2

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• Fix typos in drop_end_point_voxels.

  mmkekic

  committed
  04ec859

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• Make drop_voxels more readable

  mmkekic

  committed
  506df92

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• 655 Fix drop voxels

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  gonzaponte

  authored and

  carmenromo

  committed
  826f083

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• Remove various duplicates

  gonzaponte

  committed
  5671ca3

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• Add test for HitEnergy

  gonzaponte

  committed
  85f03cf

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• Add Ep attribute to HitEnergy

  gonzaponte

  committed
  8f94679

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• Remove meaningless parameters

  gonzaponte

  committed
  6ad1971

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• cosmetics

  gonzaponte

  committed
  73b9f98

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• Remove unnecessary np.array conversion

  gonzaponte

  committed
  b4a5da3

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• Extend test for Hit including Ep

  gonzaponte

  committed
  5e84330

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Commits on Nov 12, 2019

• Add Ep to Hit

  gonzaponte

  committed
  979ca04

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• Allow initialization of HitCollection with hits

  gonzaponte

  committed
  1c8e0c7

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• Add test for nonempty HitCollection

  gonzaponte

  committed
  fb93061

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• Add Ep attribute in hits reader

  gonzaponte

  committed
  cc705ff

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• Store Ep in hits table

  gonzaponte

  committed
  9282806

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• Modify test to prove they pass when ignoring Ep

  gonzaponte

  committed
  ff087ab

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• Replace test files with new ones

  gonzaponte

  committed
  b64be1e

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• Revert "Modify test to prove they pass when ignoring Ep"

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  gonzaponte

  committed
  dafdad7

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• Remove useless parenthesis

  gonzaponte

  committed
  4810530

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• Add new variables to hit composite

  gonzaponte

  committed
  9f9c47f

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• Parametrize test to use also Ep

  gonzaponte

  committed
  2388c33

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• 674 Add Ep attribute to hit type

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  gonzaponte

  authored and

  carmenromo

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  9383a40

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Commits on Nov 13, 2019

• DataFrame based readers for MC data

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  andLaing

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  e9fec80

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• Column names changed to match suggestions

  andLaing

  committed
  6bd4671

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• Name changes suggested by reviewer

  andLaing

  committed
  4333ad7

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• Added tb.File version for load_mchits_df

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  andLaing

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  880a397

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• Added test for get_sensor_binning

  andLaing

  committed
  775cdc9

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• 676 DataFrame based readers for MC data

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  jmunozv

  authored and

  carmenromo

  committed
  3046557

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Commits on Nov 15, 2019

• Return dropped voxels in drop_end_point_voxels and refactor

  gonzaponte

  committed
  e6de304

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• Adapt tests for new functions output

  gonzaponte

  committed
  e0a4bea

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• Adapt esmeralda to new function output

  gonzaponte

  committed
  1a09b91

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• Add test to ensure dropped voxels have nan energy

  gonzaponte

  committed
  625bb4d

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• Set energy to nan in dropped voxels

  gonzaponte

  committed
  e29e7c2

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• Add more tests

  gonzaponte

  committed
  54b40bb

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• Add test to demonstrate nasty bug

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  gonzaponte

  committed
  43c7e6a

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• Fix bug in energy sharing of hits and voxels

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  gonzaponte

  committed
  7da82be

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• Smarter voxel comparator

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  gonzaponte

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  38f2168

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• Add exhaustive test

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  gonzaponte

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  7a04144

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• 678 Return dropped voxels

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  mmkekic

  authored and

  carmenromo

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  20055ae

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Commits on Nov 18, 2019

• Make chi2 test flacky

  

  bpalmeiro

  authored and

  carmenromo

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  05b02f4

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• Remove test_diomira_fee_table

  

  bpalmeiro

  authored and

  carmenromo

  committed
  175b273

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• Remove test_event_number_from_input_file_name

  

  bpalmeiro

  authored and

  carmenromo

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  13554fc

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• Remove test_dorothea_issue_347

  

  bpalmeiro

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  carmenromo

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  c919a9c

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• Remove test_dorothea_event_not_found

  

  bpalmeiro

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  carmenromo

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  bcfb248

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• Remove test_irene_electrons_40keV_pmt_active_is_correctly_set

  

  bpalmeiro

  authored and

  carmenromo

  committed
  9b6732f

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• Remove test_irene_split_trigger

  

  bpalmeiro

  authored and

  carmenromo

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  2ccfd01

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• Remove test_penthesilea_event_not_found

  

  bpalmeiro

  authored and

  carmenromo

  committed
  49babab

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• Remove commented-out code

  

  gonzaponte

  authored and

  carmenromo

  committed
  9ff89b2

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• Unskip tests

  

  gonzaponte

  authored and

  carmenromo

  committed
  2e47455

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• Fix test

  

  gonzaponte

  authored and

  carmenromo

  committed
  be58206

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• Raise ValueError when attempting to trigger on masked channel

  

  gonzaponte

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  carmenromo

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  ed1beda

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• 569 Fix skipped test

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  carmenromo

  committed
  94db660

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Commits on Nov 19, 2019

• Test equal number of hits penthesilea and esmeralda

  mmkekic

  committed
  6748fab

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• Remove outdated test_esmeralda_exact_result_old

  mmkekic

  committed
  724ec51

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• Rename column names in summary dataframe

  mmkekic

  committed
  e58d897

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• Temporarly adapt esmeralda tests to pass

  mmkekic

  committed
  20ecb2d

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• Revert make_event_summary to loop over hits instead of tracks

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  mmkekic

  committed
  6d3ff8c

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• Modify loops in make_paolina_summary

  mmkekic

  committed
  71d5157

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• Rename tables output of esmeralda

  mmkekic

  committed
  9762ffe

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• Modify test to pass with renamed tables

  mmkekic

  committed
  2e8242e

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• Add test showing duplicated hits bug in esmeralda

  mmkekic

  committed
  578eacc

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• Fix bug of duplicated hits in esmeralda

  mmkekic

  committed
  e39a7c1

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• Add function that copies Ec to Ep hit attribute

  mmkekic

  committed
  c95488a

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• Adapt test for newly added Ep column

  mmkekic

  committed
  91fd548

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• Hardcode Ep in paolina functions in esmeralda

  mmkekic

  committed
  296cd31

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• Add copy_Ec_to_Ep component

  

  gonzaponte

  authored and

  mmkekic

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  a1af6bf

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• Add test for number of hits

  mmkekic

  committed
  12ba9a5

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• Fix types_dict in esmeralda

  mmkekic

  committed
  78bd4de

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• Remove type comparison in esmeralda exact test

  mmkekic

  committed
  342337f

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• fix not implemented S2qc to -1

  mmkekic

  committed
  e5453e9

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• Use dictionary keys when defining empty dataframes in esmeralda

  mmkekic

  committed
  e649c8c

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• Change threshold_charge params names in esmeralda

  mmkekic

  committed
  89a1ed9

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• Cosmetics.

  mmkekic

  committed
  9b2902b

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• Fixed esmeralda city description

  mmkekic

  committed
  a24c131

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• Remove unnecessary load_paolina_summary.

  mmkekic

  committed
  8690133

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• Cosmetics

  mmkekic

  committed
  4db74f8

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• Replace test file for exact esmeralda output comparison

  mmkekic

  committed
  21ceda3

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• 675 Modify hit table output of Esmeralda

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  gonzaponte

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  carmenromo

  committed
  fd7448f

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• Demonstrate filtering test too slow

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  andLaing

  committed
  a9b44ac

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• Implement sipm s/N option for penthesilea

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  andLaing

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  6fd9711

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• fixed ccidental delete of imports

  andLaing

  committed
  dea8472

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• cosmetics

  andLaing

  committed
  9f85f02

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• Incorporate reviewer comments and rebase

  andLaing

  committed
  56bd1b3

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• And the ones I forgot

  andLaing

  committed
  65c509b

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• Value tests for sipm_charge_array

  andLaing

  committed
  e3b0913

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• Ugly but verbose value comparison

  andLaing

  committed
  23b25af

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• 656 Penthesilea sn option

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  gonzaponte

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  bpalmeiro

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  1a21264

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Commits on Nov 26, 2019

• Add max_num_hits condition in track_blob_info_extractor in esmeralda

  mmkekic

  committed
  da092fa

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• add mac_num_hits param in esmeralda.config

  mmkekic

  committed
  0f1c5ab

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• Adapt tests for new esmeralda parameter

  mmkekic

  committed
  bb08167

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• Add test for filtering on max_num_events

  mmkekic

  committed
  2af420f

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• Fix docstrings and filter position in esmeralda flow.

  mmkekic

  committed
  dc8d0a7

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• Modify test for inclusive summary table

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  mmkekic

  committed
  1e0631f

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• Change esmeralda flow to write summary output before topology_filter

  mmkekic

  committed
  889bf80

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Commits on Nov 27, 2019

• Cosmetics

  mmkekic

  committed
  f60798e

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• 681 Add too-many-hits filter esmeralda

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  gonzaponte

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  carmenromo

  committed
  1fa5cf9

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Commits on Dec 4, 2019

• Upload db with gains and pdfs from run 7641

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• 682 Upload db

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Commits on Dec 10, 2019

• Upload demopp database

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• 684 Upload demopp database

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Commits on Dec 17, 2019

• Add test to show non-sequential time bins in pmap

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• Added protection for rebin bin time

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• Changed test data for irene_exact_result

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• Demonstrate fail when multiple negative charge bins

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• Patch to protect against multiple negative bins

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Commits on Dec 27, 2019

• Added comment and moved any check

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• Added explicative comment to new negative bins test

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Commits on Dec 31, 2019

• 687 Protect rebin

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Commits on Jan 9, 2020

• 688 Upload database with gain values for different SiPM voltages

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Commits on Jan 10, 2020

• Add functionality to remove hard-coded parameters in peak_functions.

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• Add tests to check new functionality regarding sample frequency

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• Add file for new tests

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• Modify tests according to new functionality

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• Cosmetics

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• 686 Removing hard-coded parameters in irene

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Commits on Jan 16, 2020

• 689 Fix coverage version

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Commits on Jan 24, 2020

• Add new city for event selection.

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• Add tests for the new city.

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• Add configuration file example.

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• Eliminate hard-coded paths.

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• Add return for city.

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• Add missing test files.

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• Add another fixture to eliminate duplicated function.

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