Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Is metagenomic data suitable for this pipeline? #27

Open
haihao999 opened this issue Nov 28, 2024 · 1 comment
Open

Is metagenomic data suitable for this pipeline? #27

haihao999 opened this issue Nov 28, 2024 · 1 comment

Comments

@haihao999
Copy link

hi,
Is metagenomic data suitable for this pipeline?
@mmolari
Copy link
Owner

mmolari commented Nov 28, 2024

hi @haihao999,
this pipeline relies unfortunately on complete assemblies, I'm afraid it might be unsuitable for metagenome assembled genomes, since these might contain assembly artifacts. But in principle it can work on any set of complete assemblies.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@mmolari @haihao999