Pre-commit hooks (#61)

Install pre-commit hooks with pixi run -e dev install. On each commit pre-commit will do some checks to sanitize the code.
Update python to 3.11 to comply to spec-0000, because we use scipy and numpy in our code base.

.github/workflows/ci.yml

@@ -23,25 +23,25 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/[email protected]
         with:
-          pixi-version: v0.32.0
+          pixi-version: v0.39.2
           environments: dev
           activate-environment: true
 
       - name: Run ruff
         run: pixi run lint
-  
+
   build:
     name: Build
     runs-on: ubuntu-latest
     steps:
 
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup pixi
         uses: prefix-dev/[email protected]
         with:
-          pixi-version: v0.32.0
+          pixi-version: v0.39.2
           environments: dev
           activate-environment: true
 
@@ -61,14 +61,14 @@ jobs:
       fail-fast: false
       matrix:
         os: [ ubuntu-22.04, macos-13, windows-2022 ]
-        python: [ "310", "311", "312", "313" ]
+        python: [ "311", "312", "313" ]
     env:
       GCC_V: 11
     steps:
 
       - name: Checkout repo
         uses: actions/checkout@v4
-      
+
       - name: Install nightly build
         uses: modflowpy/install-modflow-action@v1
         with:
@@ -77,7 +77,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/[email protected]
         with:
-          pixi-version: v0.32.0
+          pixi-version: v0.39.2
           environments: test${{ matrix.python }}
           activate-environment: true
 

.pre-commit-config.yaml

@@ -0,0 +1,19 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v3.2.0
+  hooks:
+    - id: trailing-whitespace
+    - id: end-of-file-fixer
+    - id: check-yaml
+    - id: check-added-large-files
+    - id: check-toml
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.8.2
+  hooks:
+    - id: ruff
+      types_or: [python, pyi, jupyter]
+      args: [--fix, --exit-non-zero-on-fix]
+    - id: ruff-format
+      types_or: [python, pyi, jupyter]