From 45702d69cf04b87b6bd271184183c1814271e739 Mon Sep 17 00:00:00 2001 From: Marnix <150045289+deltamarnix@users.noreply.github.com> Date: Thu, 12 Dec 2024 13:22:52 +0100 Subject: [PATCH] Pre-commit hooks (#61) Install pre-commit hooks with pixi run -e dev install. On each commit pre-commit will do some checks to sanitize the code. Update python to 3.11 to comply to spec-0000, because we use scipy and numpy in our code base. --- .github/workflows/ci.yml | 14 +- .pre-commit-config.yaml | 19 + pixi.lock | 4634 ++++++++++---------------------------- pyproject.toml | 14 +- 4 files changed, 1267 insertions(+), 3414 deletions(-) create mode 100644 .pre-commit-config.yaml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 2c431d5..4996999 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -23,25 +23,25 @@ jobs: - name: Setup pixi uses: prefix-dev/setup-pixi@v0.8.1 with: - pixi-version: v0.32.0 + pixi-version: v0.39.2 environments: dev activate-environment: true - name: Run ruff run: pixi run lint - + build: name: Build runs-on: ubuntu-latest steps: - name: Checkout repo - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Setup pixi uses: prefix-dev/setup-pixi@v0.8.1 with: - pixi-version: v0.32.0 + pixi-version: v0.39.2 environments: dev activate-environment: true @@ -61,14 +61,14 @@ jobs: fail-fast: false matrix: os: [ ubuntu-22.04, macos-13, windows-2022 ] - python: [ "310", "311", "312", "313" ] + python: [ "311", "312", "313" ] env: GCC_V: 11 steps: - name: Checkout repo uses: actions/checkout@v4 - + - name: Install nightly build uses: modflowpy/install-modflow-action@v1 with: @@ -77,7 +77,7 @@ jobs: - name: Setup pixi uses: prefix-dev/setup-pixi@v0.8.1 with: - pixi-version: v0.32.0 + pixi-version: v0.39.2 environments: test${{ matrix.python }} activate-environment: true diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..b5c65d0 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,19 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v3.2.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + - id: check-toml +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.8.2 + hooks: + - id: ruff + types_or: [python, pyi, jupyter] + args: [--fix, --exit-non-zero-on-fix] + - 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pytest-checkdocs>=2.4 ; extra == 'check' + - pytest-ruff>=0.2.1 ; sys_platform != 'cygwin' and extra == 'check' + - pytest-cov ; extra == 'cover' + - sphinx>=3.5 ; extra == 'doc' + - jaraco-packaging>=9.3 ; extra == 'doc' + - rst-linker>=1.9 ; extra == 'doc' + - furo ; extra == 'doc' + - sphinx-lint ; extra == 'doc' + - jaraco-tidelift>=1.4 ; extra == 'doc' + - pytest-enabler>=2.2 ; extra == 'enabler' + - pytest>=6,!=8.1.* ; extra == 'test' + - jaraco-itertools ; extra == 'test' + - jaraco-functools ; extra == 'test' + - more-itertools ; extra == 'test' + - big-o ; extra == 'test' + - pytest-ignore-flaky ; extra == 'test' + - jaraco-test ; extra == 'test' + - importlib-resources ; python_full_version < '3.9' and extra == 'test' + - pytest-mypy ; extra == 'type' + requires_python: '>=3.9' diff --git a/pyproject.toml b/pyproject.toml index 532158f..17a7251 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,13 +27,12 @@ classifiers = [ "Intended Audience :: Science/Research", "License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication", "Programming Language :: Python :: 3 :: Only", - "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", "Programming Language :: Python :: 3.13", "Topic :: Scientific/Engineering :: Hydrology", ] -requires-python = ">=3.10" +requires-python = ">=3.11" dependencies = [ "attrs", # todo: bounds? "cattrs", # todo: bounds? @@ -51,7 +50,7 @@ dynamic = ["version"] [project.optional-dependencies] dev = ["flopy4[lint,test,build]"] -lint = ["ruff"] +lint = ["ruff", "pre-commit>=4.0.1,<5"] test = [ "flopy4[lint]", "coverage", @@ -84,7 +83,7 @@ include = ["flopy4", "flopy4.*"] [tool.ruff] line-length = 79 -target-version = "py310" +target-version = "py311" include = ["pyproject.toml", "flopy4/**/*.py", "test/**/*.py", "docs/**/*.py"] extend-include = ["docs/**/*.ipynb"] exclude = ["flopy4/ispec/*.py"] @@ -115,9 +114,6 @@ macos = "12.0" [tool.pixi.pypi-dependencies] flopy4 = { path = ".", editable = true } -[tool.pixi.feature.py310.dependencies] -python = "3.10" - [tool.pixi.feature.py311.dependencies] python = "3.11" @@ -128,11 +124,10 @@ python = "3.12" python = "3.13" [tool.pixi.environments] -test310 = { features = ["py310", "test"], solve-group = "py310" } test311 = { features = ["py311", "test"], solve-group = "py311" } test312 = { features = ["py312", "test"], solve-group = "py312" } test313 = { features = ["py313", "test"], solve-group = "py313" } -dev = { features = ["py313", "test", "lint", "build"], solve-group = "py313" } +dev = { features = ["py311", "test", "lint", "build"], solve-group = "py311" } [tool.pixi.feature.build.tasks] build = { cmd = "python -m build" } @@ -142,3 +137,4 @@ test = { cmd = "pytest -v -n auto" } [tool.pixi.feature.lint.tasks] lint = { cmd = "ruff check ." } +install = { cmd = "pre-commit install --install-hooks" }