diff --git a/.changeset/lemon-turkeys-happen.md b/.changeset/lemon-turkeys-happen.md
new file mode 100644
index 00000000000..3405e2e23c5
--- /dev/null
+++ b/.changeset/lemon-turkeys-happen.md
@@ -0,0 +1,5 @@
+---
+'@module-federation/dts-plugin': patch
+---
+
+fix(dts-plugin): auto inject compiler output path to avoid duplicate zip file
diff --git a/packages/dts-plugin/src/core/configurations/remotePlugin.test.ts b/packages/dts-plugin/src/core/configurations/remotePlugin.test.ts
index 3bbe8e5ffbf..b3f4b245b9c 100644
--- a/packages/dts-plugin/src/core/configurations/remotePlugin.test.ts
+++ b/packages/dts-plugin/src/core/configurations/remotePlugin.test.ts
@@ -78,6 +78,7 @@ describe('hostPlugin', () => {
           implementation: '',
           generateAPITypes: false,
           context: process.cwd(),
+          outputDir: '',
           abortOnError: true,
           extractRemoteTypes: false,
           extractThirdParty: false,
@@ -141,6 +142,7 @@ describe('hostPlugin', () => {
           generateAPITypes: false,
           implementation: '',
           context: process.cwd(),
+          outputDir: '',
           abortOnError: true,
           extractRemoteTypes: false,
           extractThirdParty: false,
diff --git a/packages/dts-plugin/src/core/configurations/remotePlugin.ts b/packages/dts-plugin/src/core/configurations/remotePlugin.ts
index ea96b10fd9d..a171131c638 100644
--- a/packages/dts-plugin/src/core/configurations/remotePlugin.ts
+++ b/packages/dts-plugin/src/core/configurations/remotePlugin.ts
@@ -22,6 +22,7 @@ const defaultOptions = {
   abortOnError: true,
   extractRemoteTypes: false,
   extractThirdParty: false,
+  outputDir: '',
 } satisfies Partial<RemoteOptions>;
 
 function getEffectiveRootDir(
@@ -59,6 +60,7 @@ const readTsConfig = (
     compiledTypesFolder,
     context,
     additionalFilesToCompile,
+    outputDir,
   }: Required<RemoteOptions>,
   mapComponentsToExpose: Record<string, string>,
 ): TsConfigJson => {
@@ -84,7 +86,7 @@ const readTsConfig = (
 
   const outDir = resolve(
     context,
-    configContent.options.outDir || 'dist',
+    outputDir || configContent.options.outDir || 'dist',
     typesFolder,
     compiledTypesFolder,
   );
diff --git a/packages/dts-plugin/src/core/interfaces/RemoteOptions.ts b/packages/dts-plugin/src/core/interfaces/RemoteOptions.ts
index b08718acf87..6cfb3d4e051 100644
--- a/packages/dts-plugin/src/core/interfaces/RemoteOptions.ts
+++ b/packages/dts-plugin/src/core/interfaces/RemoteOptions.ts
@@ -5,4 +5,5 @@ export interface RemoteOptions extends moduleFederationPlugin.DtsRemoteOptions {
   context?: string;
   implementation?: string;
   hostRemoteTypesFolder?: string;
+  outputDir?: string;
 }
diff --git a/packages/dts-plugin/src/plugins/DevPlugin.ts b/packages/dts-plugin/src/plugins/DevPlugin.ts
index 00a2bed980c..064fe6a9c6f 100644
--- a/packages/dts-plugin/src/plugins/DevPlugin.ts
+++ b/packages/dts-plugin/src/plugins/DevPlugin.ts
@@ -191,6 +191,10 @@ export class DevPlugin implements WebpackPluginInstance {
                 ? undefined
                 : normalizedDtsOptions.implementation,
             context: compiler.context,
+            outputDir: path.relative(
+              compiler.context,
+              compiler.outputPath || compiler.options.output.path,
+            ),
             moduleFederationConfig: {
               ...this._options,
             },
diff --git a/packages/dts-plugin/src/plugins/GenerateTypesPlugin.ts b/packages/dts-plugin/src/plugins/GenerateTypesPlugin.ts
index 6cb0a941373..9059d36c967 100644
--- a/packages/dts-plugin/src/plugins/GenerateTypesPlugin.ts
+++ b/packages/dts-plugin/src/plugins/GenerateTypesPlugin.ts
@@ -10,6 +10,7 @@ import {
   generateTypes,
   generateTypesInChildProcess,
   retrieveTypesAssetsInfo,
+  type DTSManagerOptions,
 } from '../core/index';
 import path from 'path';
 
@@ -42,10 +43,14 @@ export class GenerateTypesPlugin implements WebpackPluginInstance {
       return;
     }
 
-    const finalOptions = {
+    const finalOptions: DTSManagerOptions = {
       remote: {
         implementation: dtsOptions.implementation,
         context: compiler.context,
+        outputDir: path.relative(
+          compiler.context,
+          compiler.outputPath || compiler.options.output.path,
+        ),
         moduleFederationConfig: pluginOptions,
         ...normalizedGenerateTypes,
       },
@@ -74,8 +79,11 @@ export class GenerateTypesPlugin implements WebpackPluginInstance {
     const generateTypesFn = getGenerateTypesFn();
     let compiledOnce = false;
 
-    const emitTypesFiles = async () => {
+    const emitTypesFilesDev = async () => {
       try {
+        if (!isDev()) {
+          return;
+        }
         const { zipTypesPath, apiTypesPath, zipName, apiFileName } =
           retrieveTypesAssetsInfo(finalOptions.remote);
 
@@ -166,7 +174,7 @@ export class GenerateTypesPlugin implements WebpackPluginInstance {
             }
 
             if (compiledOnce) {
-              emitTypesFiles();
+              emitTypesFilesDev();
               return;
             }