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Slingshot not working in README #36

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moi-taiga opened this issue Aug 16, 2024 · 0 comments
Open

Slingshot not working in README #36

moi-taiga opened this issue Aug 16, 2024 · 0 comments
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@moi-taiga
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D was unable to produce a trajectory.

README code:
sce <- slingshot(sce,
clusterLabels = "seurat_clusters",
start.clus = "2",
end.clus = "1",
reducedDim = "UMAP")

D Code:
sce <- slingshot(sce,

  •               clusterLabels = "Tumour_celltype",
    
  •               #start.clus  = "2",
    
  •               #end.clus = "1",
    
  •               reducedDim = "UMAP",
    
  •               useNames = TRUE)
    

Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.

Needs testing and more information.
Which Slingshot version is being used?

@moi-taiga moi-taiga added the question Further information is requested label Aug 16, 2024
@moi-taiga moi-taiga self-assigned this Aug 16, 2024
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