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D was unable to produce a trajectory.
README code: sce <- slingshot(sce, clusterLabels = "seurat_clusters", start.clus = "2", end.clus = "1", reducedDim = "UMAP")
D Code: sce <- slingshot(sce,
clusterLabels = "Tumour_celltype",
#start.clus = "2",
#end.clus = "1",
reducedDim = "UMAP",
useNames = TRUE)
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
Needs testing and more information. Which Slingshot version is being used?
The text was updated successfully, but these errors were encountered:
moi-taiga
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D was unable to produce a trajectory.
README code:
sce <- slingshot(sce,
clusterLabels = "seurat_clusters",
start.clus = "2",
end.clus = "1",
reducedDim = "UMAP")
D Code:
sce <- slingshot(sce,
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
Needs testing and more information.
Which Slingshot version is being used?
The text was updated successfully, but these errors were encountered: