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remove reliance on reference_sce #48

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moi-taiga opened this issue Feb 25, 2025 · 1 comment
Open

remove reliance on reference_sce #48

moi-taiga opened this issue Feb 25, 2025 · 1 comment
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enhancement New feature or request

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@moi-taiga
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The functions:

acccuracy_test()
reference_idents()
ppr_vioplot()

Currently require reference_sce.
When PPR is shipped with pre-computed trajectories reference_sce will not be available.
Therefore the functions should be set up to accept whatever alternative to reference_sce is used.
perhaps the metadata only, which includes cell names identities and pseudo-times.

precision will still require reference_sce().

@moi-taiga moi-taiga added the enhancement New feature or request label Feb 25, 2025
@moi-taiga moi-taiga self-assigned this Feb 25, 2025
@moi-taiga moi-taiga changed the title remove reliance on reference.sce remove reliance on reference_sce Feb 25, 2025
@moi-taiga
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acccuracy_test() will still require refernece_sce, it should in fact only require refernce_sce; as per issue #45 .

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