Fix packaging issues of C++ sources and bump version number

MANIFEST.in

@@ -1,4 +1,4 @@
-recursive-include fwdpy11 *.cpp *.hpp
+recursive-include fwdpy11 *.cc *.hpp
 recursive-include m4 *.m4
 recursive-include tests *.cpp *.pyx *.py
 include COPYING

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for fwdpy11 0.2.0.
+# Generated by GNU Autoconf 2.69 for fwdpy11 0.2.1.
 #
 # Report bugs to <[email protected]>.
 #
@@ -580,8 +580,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='fwdpy11'
 PACKAGE_TARNAME='fwdpy11'
-PACKAGE_VERSION='0.2.0'
-PACKAGE_STRING='fwdpy11 0.2.0'
+PACKAGE_VERSION='0.2.1'
+PACKAGE_STRING='fwdpy11 0.2.1'
 PACKAGE_BUGREPORT='[email protected]'
 PACKAGE_URL=''
 
@@ -1256,7 +1256,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures fwdpy11 0.2.0 to adapt to many kinds of systems.
+\`configure' configures fwdpy11 0.2.1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1318,7 +1318,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of fwdpy11 0.2.0:";;
+     short | recursive ) echo "Configuration of fwdpy11 0.2.1:";;
    esac
   cat <<\_ACEOF
 
@@ -1408,7 +1408,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-fwdpy11 configure 0.2.0
+fwdpy11 configure 0.2.1
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1798,7 +1798,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by fwdpy11 $as_me 0.2.0, which was
+It was created by fwdpy11 $as_me 0.2.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -5001,7 +5001,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by fwdpy11 $as_me 0.2.0, which was
+This file was extended by fwdpy11 $as_me 0.2.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -5054,7 +5054,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-fwdpy11 config.status 0.2.0
+fwdpy11 config.status 0.2.1
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -45,7 +45,7 @@ dnl 2) package version (i.e. 1.2)
 dnl 3) bug/info/project email address (i.e. [email protected])
 dnl----
 dnl
-AC_INIT([fwdpy11], [0.2.0], [[email protected]])
+AC_INIT([fwdpy11], [0.2.1], [[email protected]])
 
 dnl----
 dnl If you plan to use Automake, initialize it hre

doc/conf.py

@@ -96,9 +96,9 @@ def setup(app):
 # built documents.
 #
 # The short X.Y version.
-version = '0.2.0'
+version = '0.2.1'
 # The full version, including alpha/beta/rc tags.
-release = '0.2.0'
+release = '0.2.1'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/fwdpy11.doxygen

@@ -38,7 +38,7 @@ PROJECT_NAME           = fwdpy11
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 0.2.0
+PROJECT_NUMBER         = 0.2.1
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

fwdpy11/_version.py

@@ -1 +1 @@
-__version__ = '0.2.0'
+__version__ = '0.2.1'

setup.py

@@ -15,7 +15,7 @@
 if sys.version_info[0] < 3:
     raise ValueError("Python 3 is required!")
 
-__version__ = '0.2.0'
+__version__ = '0.2.1'
 
 if sys.version_info < (3, 3):
     raise RuntimeError("Python >= 3.3 required")
@@ -145,16 +145,16 @@ def __str__(self):
     CMakeExtension('fwdpy11._Population'),
     CMakeExtension('fwdpy11._Populations'),
     CMakeExtension('fwdpy11.fwdpy11_types'),
-    CMakeExtension('fwdpy11.genetic_value_noise',),
-    CMakeExtension('fwdpy11.wright_fisher_slocus',),
-    CMakeExtension('fwdpy11.wright_fisher_mlocus',),
-    CMakeExtension('fwdpy11.gsl_random',),
+    CMakeExtension('fwdpy11.genetic_value_noise'),
+    CMakeExtension('fwdpy11.wright_fisher_slocus'),
+    CMakeExtension('fwdpy11.wright_fisher_mlocus'),
+    CMakeExtension('fwdpy11.gsl_random'),
     CMakeExtension('fwdpy11.multilocus'),
     CMakeExtension('fwdpy11.util'),
-    CMakeExtension('fwdpy11.ts',),
-    CMakeExtension('fwdpy11.tsrecorders',),
-    CMakeExtension('fwdpy11.ts_from_msprime',),
-    CMakeExtension('fwdpy11.wright_fisher_slocus_ts',),
+    CMakeExtension('fwdpy11.ts'),
+    CMakeExtension('fwdpy11.tsrecorders'),
+    CMakeExtension('fwdpy11.ts_from_msprime'),
+    CMakeExtension('fwdpy11.wright_fisher_slocus_ts'),
 ]
 
 

setup.py.in

@@ -145,16 +145,16 @@ ext_modules = [
     CMakeExtension('fwdpy11._Population'),
     CMakeExtension('fwdpy11._Populations'),
     CMakeExtension('fwdpy11.fwdpy11_types'),
-    CMakeExtension('fwdpy11.genetic_value_noise',),
-    CMakeExtension('fwdpy11.wright_fisher_slocus',),
-    CMakeExtension('fwdpy11.wright_fisher_mlocus',),
-    CMakeExtension('fwdpy11.gsl_random',),
+    CMakeExtension('fwdpy11.genetic_value_noise'),
+    CMakeExtension('fwdpy11.wright_fisher_slocus'),
+    CMakeExtension('fwdpy11.wright_fisher_mlocus'),
+    CMakeExtension('fwdpy11.gsl_random'),
     CMakeExtension('fwdpy11.multilocus'),
     CMakeExtension('fwdpy11.util'),
-    CMakeExtension('fwdpy11.ts',),
-    CMakeExtension('fwdpy11.tsrecorders',),
-    CMakeExtension('fwdpy11.ts_from_msprime',),
-    CMakeExtension('fwdpy11.wright_fisher_slocus_ts',),
+    CMakeExtension('fwdpy11.ts'),
+    CMakeExtension('fwdpy11.tsrecorders'),
+    CMakeExtension('fwdpy11.ts_from_msprime'),
+    CMakeExtension('fwdpy11.wright_fisher_slocus_ts'),
 ]