fwdpy11 0.3.0

Add examples to MANIFEST.in

Pre-release of 0.3.0

Many new changes! See Changelog at the manual

Fix packaging issue

This is a point release that fixes an issue where several of the C++ source files were not included in 0.2.0 on pypi.

First public release with tree sequence recording!

This is the first release with support for tree sequence recording, data interchange with msprime, etc.. Major updates to many corners of the package.

There is a lot of cool stuff, and a ton of work went into this version.

So many changes

Major new release. See change log in manual. Tree sequence recording is the "big deal" here, but lots of other cool stuff, too.

fwdpy11 0.1.4

Too many changes to list here. See change log in the manual.

Compatibility with numpy 1.14

Fixes #66, making fwdpy11 compatible with numpy 1.14

fwdpy11 0.1.3.post 1 (bug fix release)

Fixes #23 and #25 via pull request #24.

fwdpy11 0.1.3

Bug fixes

• Issue #2 on GitHub fixed.

API changes/new features:

• :class:fwdpy11.regions.Sregion may now model distrubitions of effect sizes on scales other than the effect size itself. A scaling parameter allows the DFE to be functions of N, 2N, 4N, etc. PR #16
  • Github issues #7, #8, and #9 resolved. All are relatively minor usability tweaks.
• :func:fwdpy11.util.change_effect_size added, allowing the "s" and "h" fields of :class:fwdpy11.fwdpp_types.Mutation to be changed. commit
• The attributes of :class:fwdpy11.fwdpp_types.Mutation are now read-only, addressing Issue #5 on GitHub. commit
• Trait-to-fitness mapping functions for quantitative trait simulations now take the entire population, rather than just the generation. This allows us to model things like truncation selection, etc. commit

Back-end changes

• Code base updadted to work with pybind11_ 2.2.0. #19
• :mod:fwdpy11.model_params has been refactored, addressing issue #4 on GitHub. The new code base is more idiomatic w.r.to Python's OO methods. commit
• Many of the C++-based types can now be pickled, making model parameter objects easier to serialize. Most of the
  changes are in this commit. This mostly addresses Issue #3 on GitHub
• Added magic numbers to keep track of compatibility changes to serialization formats.
• str changed to repr for region types commit
• fwdpy11.model_params now uses try/except rather than isinstance to check that rates are float-like types.commit

Second alpha release of 0.1.3

Addresses #7, #8, #9.

Thanks to @vsbuffalo for suggesting #7 and #9.