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Note of obsoletion: PHENOTYPE IRIs #909

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matentzn opened this issue Feb 20, 2020 · 3 comments
Open

Note of obsoletion: PHENOTYPE IRIs #909

matentzn opened this issue Feb 20, 2020 · 3 comments

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@matentzn
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The following IRIs will not be supported by uPheno anymore:

https://github.com/obophenotype/upheno-dev/blob/master/src/curation/qc/required_allele_phenotype.txt
https://github.com/obophenotype/upheno-dev/blob/master/src/curation/qc/required_other_classes.txt

If anyone cares about them, they should let me know.

@TomConlin
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Does this leave the thousands of remaining PHENOTYPE IRIs not on this list supported?

@matentzn
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Yes, but properly. I will work with flybase to get them to support a proper phenotype module for their anatomy ontology, which gets rid of the FBBT*PHENOTYPE terms. I will also support all GO phenotype terms directly from uPheno.

@matentzn
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The goal is to not have a single IRI ending with PHENOTYPE

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