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Temp: Bug fix: Synonym Sync: Entries without exact mappings
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- Add: Outputs to compare to before the code in order to check the diffs for correctness.
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joeflack4 committed Nov 20, 2024
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236 changes: 3 additions & 233 deletions src/ontology/reports/sync-synonym/doid.synonyms.confirmed.robot.tsv
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630 changes: 1 addition & 629 deletions src/ontology/reports/sync-synonym/doid.synonyms.updated.robot.tsv
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5 changes: 1 addition & 4 deletions src/ontology/reports/sync-synonym/icd10cm.synonyms.confirmed.robot.tsv
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Expand Up @@ -38,8 +38,8 @@ MONDO:0001234 adhesive otitis media oio:hasExactSynonym adhesive middle ear dis
MONDO:0001238 polycythemia neonatorum oio:hasExactSynonym polycythemia neonatorum polycythemia neonatorum Polycythemia neonatorum ICD10CM:P61.1 Polycythemia neonatorum polycythemia neonatorum ICD10CM:P61.1
MONDO:0001244 vitamin K deficiency hemorrhagic disease oio:hasExactSynonym deficiency of vitamin K deficiency of vitamin K Deficiency of vitamin K ICD10CM:E56.1 Deficiency of vitamin K deficiency of vitamin K ICD10CM:E56.1
MONDO:0001258 vertebral artery occlusion oio:hasExactSynonym occlusion and stenosis of vertebral artery occlusion and stenosis of vertebral artery Occlusion and stenosis of vertebral artery ICD10CM:I65.0 Occlusion and stenosis of vertebral artery occlusion and stenosis of vertebral artery ICD10CM:I65.0
MONDO:0001268 gingival recession oio:hasExactSynonym gingival recession ICD10CM:K06.0 Gingival recession gingival recession ICD10CM:K06.0
MONDO:0001268 gingival recession oio:hasExactSynonym gingival recession gingival recession Gingival recession ICD10CM:K06.0 Gingival recession gingival recession ICD10CM:K06.0
MONDO:0001268 gingival recession oio:hasExactSynonym gingival recession ICD10CM:K06.0 Gingival recession gingival recession ICD10CM:K06.0
MONDO:0001276 expressive language disorder oio:hasExactSynonym expressive language disorder expressive language disorder Expressive language disorder ICD10CM:F80.1 Expressive language disorder expressive language disorder ICD10CM:F80.1
MONDO:0001286 exotropia oio:hasExactSynonym divergent concomitant strabismus divergent concomitant strabismus Divergent concomitant strabismus ICD10CM:H50.1 Exotropia divergent concomitant strabismus ICD10CM:H50.1
MONDO:0001293 subglottis cancer oio:hasExactSynonym malignant neoplasm of subglottis malignant neoplasm of subglottis Malignant neoplasm of subglottis ICD10CM:C32.2 Malignant neoplasm of subglottis malignant neoplasm of subglottis ICD10CM:C32.2
Expand Down Expand Up @@ -466,7 +466,6 @@ MONDO:0016295 neuronal ceroid lipofuscinosis oio:hasExactSynonym neuronal ceroi
MONDO:0016349 congenital hydrocephalus oio:hasExactSynonym congenital hydrocephalus congenital hydrocephalus Congenital hydrocephalus ICD10CM:Q03 Congenital hydrocephalus congenital hydrocephalus ICD10CM:Q03
MONDO:0017137 onchocerciasis oio:hasExactSynonym Onchocerca volvulus infection Onchocerca volvulus infection onchocerca volvulus infection ICD10CM:B73 Onchocerciasis Onchocerca volvulus infection ICD10CM:B73
MONDO:0017137 onchocerciasis oio:hasExactSynonym onchocerciasis onchocerciasis Onchocerciasis ICD10CM:B73 Onchocerciasis onchocerciasis ICD10CM:B73
MONDO:0017278 autoimmune polyendocrinopathy oio:hasExactSynonym Antiphospholipid Syndrome Antiphospholipid Syndrome Antiphospholipid syndrome ICD10CM:D68.61 Antiphospholipid syndrome Antiphospholipid Syndrome ICD10CM:D68.61
MONDO:0017278 autoimmune polyendocrinopathy oio:hasExactSynonym autoimmune polyglandular failure autoimmune polyglandular failure Autoimmune polyglandular failure ICD10CM:E31.0 Autoimmune polyglandular failure autoimmune polyglandular failure ICD10CM:E31.0
MONDO:0017319 hereditary elliptocytosis oio:hasExactSynonym ovalocytosis ICD10CM:D58.1 Hereditary elliptocytosis ovalocytosis ICD10CM:D58.1
MONDO:0017361 congenital rubella syndrome oio:hasExactSynonym congenital rubella syndrome congenital rubella syndrome Congenital rubella syndrome ICD10CM:P35.0 Congenital rubella syndrome congenital rubella syndrome ICD10CM:P35.0
Expand All @@ -476,7 +475,6 @@ MONDO:0018089 double outlet right ventricle oio:hasExactSynonym double outlet r
MONDO:0018150 Gaucher disease oio:hasExactSynonym Gaucher disease ICD10CM:E75.22 Gaucher disease http://purl.obolibrary.org/obo/mondo#CLINGEN_LABEL Gaucher disease ICD10CM:E75.22
MONDO:0018181 staphylococcal scalded skin syndrome oio:hasExactSynonym Ritter's disease ICD10CM:L00 Staphylococcal scalded skin syndrome Ritter's disease ICD10CM:L00
MONDO:0018181 staphylococcal scalded skin syndrome oio:hasExactSynonym staphylococcal scalded skin syndrome staphylococcal scalded skin syndrome Staphylococcal scalded skin syndrome ICD10CM:L00 Staphylococcal scalded skin syndrome staphylococcal scalded skin syndrome ICD10CM:L00
MONDO:0018181 staphylococcal scalded skin syndrome oio:hasExactSynonym pemphigus neonatorum pemphigus neonatorum Pemphigus neonatorum ICD10CM:L01.03 Bullous impetigo pemphigus neonatorum ICD10CM:L01.03
MONDO:0018661 Zika virus infectious disease oio:hasExactSynonym Zika virus disease ICD10CM:A92.5 Zika virus disease Zika virus disease ICD10CM:A92.5
MONDO:0018661 Zika virus infectious disease oio:hasExactSynonym Zika virus infection ICD10CM:A92.5 Zika virus disease Zika virus infection ICD10CM:A92.5
MONDO:0018683 acquired ichthyosis oio:hasExactSynonym acquired ichthyosis acquired ichthyosis Acquired ichthyosis ICD10CM:L85.0 Acquired ichthyosis acquired ichthyosis ICD10CM:L85.0
Expand Down Expand Up @@ -505,7 +503,6 @@ MONDO:0019180 hereditary hemorrhagic telangiectasia oio:hasExactSynonym heredit
MONDO:0019186 Q fever oio:hasExactSynonym infection due to Coxiella burnetii infection due to Coxiella burnetii Infection due to Coxiella burnetii ICD10CM:A78 Q fever infection due to Coxiella burnetii ICD10CM:A78
MONDO:0019186 Q fever oio:hasExactSynonym nine Mile fever nine Mile fever Nine Mile fever ICD10CM:A78 Q fever nine Mile fever ICD10CM:A78
MONDO:0019186 Q fever oio:hasExactSynonym quadrilateral fever quadrilateral fever Quadrilateral fever ICD10CM:A78 Q fever quadrilateral fever ICD10CM:A78
MONDO:0019312 Hermansky-Pudlak syndrome oio:hasExactSynonym Hepatopulmonary Syndrome Hepatopulmonary Syndrome Hepatopulmonary syndrome ICD10CM:K76.81 Hepatopulmonary syndrome Hepatopulmonary Syndrome ICD10CM:K76.81
MONDO:0019313 lymphatic malformation oio:hasExactSynonym hereditary lymphedema hereditary lymphedema Hereditary lymphedema ICD10CM:Q82.0 Hereditary lymphedema hereditary lymphedema ICD10CM:Q82.0
MONDO:0019323 pemphigus erythematosus oio:hasExactSynonym Senear-Usher syndrome ICD10CM:L10.4 Pemphigus erythematosus Senear-Usher syndrome ICD10CM:L10.4
MONDO:0019345 shigellosis oio:hasExactSynonym shigellosis shigellosis Shigellosis ICD10CM:A03 Shigellosis shigellosis ICD10CM:A03
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7 changes: 1 addition & 6 deletions src/ontology/reports/sync-synonym/icd10cm.synonyms.updated.robot.tsv
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Expand Up @@ -10,7 +10,6 @@ MONDO:0001444 Chagas disease oio:hasExactSynonym oio:hasRelatedSynonym American
MONDO:0001875 epicondylitis oio:hasExactSynonym oio:hasRelatedSynonym tennis elbow tennis elbow Tennis elbow ICD10CM:M77.1 Lateral epicondylitis DOID:14087 tennis elbow ICD10CM:M77.1
MONDO:0002041 fungal infectious disease oio:hasExactSynonym oio:hasRelatedSynonym mycoses ICD10CM:B35-B49 Mycoses (B35-B49) DOID:1564 mycoses ICD10CM:B35-B49
MONDO:0002209 heel spur oio:hasExactSynonym oio:hasRelatedSynonym calcaneal spur calcaneal spur Calcaneal spur ICD10CM:M77.3 Calcaneal spur DOID:210, ICD9CM:726.73 calcaneal spur ICD10CM:M77.3
MONDO:0003009 hyperaldosteronism oio:hasExactSynonym oio:hasRelatedSynonym primary hyperaldosteronism primary hyperaldosteronism Primary hyperaldosteronism ICD10CM:E26.0 Primary hyperaldosteronism DOID:446 primary hyperaldosteronism ICD10CM:E26.0
MONDO:0003406 sleep-wake disorder oio:hasExactSynonym oio:hasRelatedSynonym sleep disorders sleep disorders Sleep disorders ICD10CM:G47 Sleep disorders MESH:D012893 sleep disorders ICD10CM:G47
MONDO:0004473 epiglottis cancer oio:hasExactSynonym oio:hasNarrowSynonym malignant neoplasm of anterior surface of epiglottis malignant neoplasm of anterior surface of epiglottis Malignant neoplasm of anterior surface of epiglottis ICD10CM:C10.1 Malignant neoplasm of anterior surface of epiglottis DOID:8133, MTH:U001374 malignant neoplasm of anterior surface of epiglottis ICD10CM:C10.1
MONDO:0004650 malignant carotid body paraganglioma oio:hasExactSynonym oio:hasRelatedSynonym malignant neoplasm of carotid body malignant neoplasm of carotid body Malignant neoplasm of carotid body ICD10CM:C75.4 Malignant neoplasm of carotid body NCIT:C3574 malignant neoplasm of carotid body ICD10CM:C75.4
Expand All @@ -27,7 +26,6 @@ MONDO:0005173 actinic keratosis oio:hasExactSynonym oio:hasRelatedSynonym Senile
MONDO:0005173 actinic keratosis oio:hasExactSynonym oio:hasRelatedSynonym senile keratosis senile keratosis Senile keratosis ICD10CM:L57.0 Actinic keratosis NCIT:C3148 senile keratosis ICD10CM:L57.0
MONDO:0005300 chronic kidney disease oio:hasExactSynonym oio:hasRelatedSynonym chronic renal insufficiency chronic renal insufficiency Chronic renal insufficiency ICD10CM:N18.9 Chronic kidney disease, unspecified NCIT:C80078 chronic renal insufficiency ICD10CM:N18.9
MONDO:0005301 multiple sclerosis oio:hasExactSynonym oio:hasNarrowSynonym generalized multiple sclerosis generalized multiple sclerosis Generalized multiple sclerosis ICD10CM:G35 Multiple sclerosis DOID:2377 generalized multiple sclerosis ICD10CM:G35
MONDO:0005518 pseudohermaphroditism oio:hasExactSynonym oio:hasRelatedSynonym indeterminate sex and pseudohermaphroditism indeterminate sex and pseudohermaphroditism Indeterminate sex and pseudohermaphroditism ICD10CM:Q56 Indeterminate sex and pseudohermaphroditism DOID:3765 indeterminate sex and pseudohermaphroditism ICD10CM:Q56
MONDO:0005519 renal pelvis carcinoma oio:hasExactSynonym oio:hasBroadSynonym malignant neoplasm of renal pelvis malignant neoplasm of renal pelvis Malignant neoplasm of renal pelvis ICD10CM:C65 Malignant neoplasm of renal pelvis DOID:4919, ICD9CM:189.1, MONDO:patterns/cancer malignant neoplasm of renal pelvis ICD10CM:C65
MONDO:0005665 Bell's palsy oio:hasExactSynonym oio:hasRelatedSynonym facial palsy facial palsy Facial palsy ICD10CM:G51.0 Bell's palsy NCIT:C26769 facial palsy ICD10CM:G51.0
MONDO:0005683 brucellosis oio:hasExactSynonym oio:hasRelatedSynonym Malta fever ICD10CM:A23 Brucellosis DOID:11077 Malta fever ICD10CM:A23
Expand All @@ -50,10 +48,8 @@ MONDO:0006702 chronic inflammatory demyelinating polyradiculoneuropathy oio:hasE
MONDO:0006861 myeloid sarcoma oio:hasExactSynonym oio:hasRelatedSynonym granulocytic sarcoma granulocytic sarcoma Granulocytic sarcoma ICD10CM:C92.3 Myeloid sarcoma DOID:8683, NCIT:C35815, Orphanet:86850 granulocytic sarcoma ICD10CM:C92.3
MONDO:0007039 NF2-related schwannomatosis oio:hasExactSynonym oio:hasBroadSynonym acoustic neurofibromatosis acoustic neurofibromatosis Acoustic neurofibromatosis ICD10CM:Q85.02 Neurofibromatosis, type 2 NCIT:C3274 acoustic neurofibromatosis ICD10CM:Q85.02
MONDO:0007039 NF2-related schwannomatosis oio:hasExactSynonym oio:hasRelatedSynonym neurofibromatosis, type 2 neurofibromatosis, type 2 Neurofibromatosis, type 2 ICD10CM:Q85.02 Neurofibromatosis, type 2 OMIM:101000 neurofibromatosis, type 2 ICD10CM:Q85.02
MONDO:0007345 aorta coarctation oio:hasExactSynonym oio:hasRelatedSynonym coarctation of aorta ICD10CM:Q25.1 Coarctation of aorta OMIM:120000 coarctation of aorta ICD10CM:Q25.1
MONDO:0007345 aorta coarctation oio:hasExactSynonym oio:hasRelatedSynonym coarctation of aorta coarctation of aorta Coarctation of aorta ICD10CM:Q25.1 Coarctation of aorta OMIM:120000 coarctation of aorta ICD10CM:Q25.1
MONDO:0007416 Balkan nephropathy oio:hasExactSynonym oio:hasRelatedSynonym nephropathia epidemica nephropathia epidemica Nephropathia epidemica ICD10CM:A98.5 Hemorrhagic fever with renal syndrome OMIM:124100 nephropathia epidemica ICD10CM:A98.5
MONDO:0007448 familial dermatographia oio:hasExactSynonym oio:hasRelatedSynonym vibratory urticaria vibratory urticaria Vibratory urticaria ICD10CM:L50.4 Vibratory urticaria MESH:C536612 vibratory urticaria ICD10CM:L50.4
MONDO:0007345 aorta coarctation oio:hasExactSynonym oio:hasRelatedSynonym coarctation of aorta ICD10CM:Q25.1 Coarctation of aorta OMIM:120000 coarctation of aorta ICD10CM:Q25.1
MONDO:0007699 Hashimoto thyroiditis oio:hasExactSynonym oio:hasRelatedSynonym autoimmune thyroiditis autoimmune thyroiditis Autoimmune thyroiditis ICD10CM:E06.3 Autoimmune thyroiditis DOID:7188 autoimmune thyroiditis ICD10CM:E06.3
MONDO:0007699 Hashimoto thyroiditis oio:hasExactSynonym oio:hasBroadSynonym lymphocytic thyroiditis lymphocytic thyroiditis Lymphocytic thyroiditis ICD10CM:E06.3 Autoimmune thyroiditis DOID:7188, NCIT:C38766 lymphocytic thyroiditis ICD10CM:E06.3
MONDO:0007810 autosomal dominant ichthyosis vulgaris oio:hasExactSynonym oio:hasRelatedSynonym ichthyosis vulgaris ichthyosis vulgaris Ichthyosis vulgaris ICD10CM:Q80.0 Ichthyosis vulgaris OMIM:146700 ichthyosis vulgaris ICD10CM:Q80.0
Expand All @@ -71,7 +67,6 @@ MONDO:0010565 red color blindness oio:hasExactSynonym oio:hasRelatedSynonym prot
MONDO:0010790 MERRF syndrome oio:hasExactSynonym oio:hasRelatedSynonym myoclonic epilepsy associated with ragged-RED fibers myoclonic epilepsy associated with ragged-RED fibers Myoclonic epilepsy associated with ragged-red fibers ICD10CM:E88.42 MERRF syndrome MONDO:Lexical, OMIM:545000 myoclonic epilepsy associated with ragged-RED fibers ICD10CM:E88.42
MONDO:0010808 fatal familial insomnia oio:hasExactSynonym oio:hasRelatedSynonym fatal familial INSOMNIA fatal familial INSOMNIA Fatal familial insomnia ICD10CM:A81.83 Fatal familial insomnia OMIM:600072 fatal familial INSOMNIA ICD10CM:A81.83
MONDO:0010808 fatal familial insomnia oio:hasExactSynonym oio:hasRelatedSynonym FFI ICD10CM:A81.83 Fatal familial insomnia http://purl.obolibrary.org/obo/mondo#ABBREVIATION http://purl.obolibrary.org/obo/mondo#ABBREVIATION MONDO:Lexical, OMIM:600072 FFI ICD10CM:A81.83 http://purl.obolibrary.org/obo/mondo#ABBREVIATION
MONDO:0011989 leishmaniasis oio:hasExactSynonym oio:hasRelatedSynonym post-kala-azar dermal leishmaniasis post-kala-azar dermal leishmaniasis Post-kala-azar dermal leishmaniasis ICD10CM:B55.0 Visceral leishmaniasis DOID:9065 post-kala-azar dermal leishmaniasis ICD10CM:B55.0
MONDO:0013282 alpha 1-antitrypsin deficiency oio:hasExactSynonym oio:hasRelatedSynonym ALPHA-1-antitrypsin deficiency ALPHA-1-antitrypsin deficiency Alpha-1-antitrypsin deficiency ICD10CM:E88.01 Alpha-1-antitrypsin deficiency OMIM:613490 ALPHA-1-antitrypsin deficiency ICD10CM:E88.01
MONDO:0013282 alpha 1-antitrypsin deficiency oio:hasExactSynonym oio:hasRelatedSynonym alpha-1-antitrypsin deficiency alpha-1-antitrypsin deficiency Alpha-1-antitrypsin deficiency ICD10CM:E88.01 Alpha-1-antitrypsin deficiency OMIM:613490 alpha-1-antitrypsin deficiency ICD10CM:E88.01
MONDO:0015947 inherited ichthyosis oio:hasExactSynonym oio:hasRelatedSynonym congenital ichthyosis congenital ichthyosis Congenital ichthyosis ICD10CM:Q80 Congenital ichthyosis congenital ichthyosis ICD10CM:Q80
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