Merge pull request #3511 from monarch-initiative/release_2021-08-11

release_2021-08-11
monarch-initiative · Aug 11, 2021 · db78d61 · db78d61
2 parents 472f559 + 1aa3c67
commit db78d61
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Showing 9 changed files with 67 additions and 145 deletions.
diff --git a/src/ontology/components/mondo-tags.owl b/src/ontology/components/mondo-tags.owl
@@ -3566,14 +3566,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/MONDO_0001328 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0001328">
-        <mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/MONDO_0001332 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0001332">
@@ -23112,14 +23104,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/MONDO_0008076 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008076">
-        <mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/MONDO_0008078 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0008078">
@@ -26702,14 +26686,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/MONDO_0010301 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010301">
-        <mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/MONDO_0010311 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0010311">
@@ -45186,12 +45162,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/MONDO_0016597 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0016597"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/MONDO_0016599 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0016599">
@@ -47297,7 +47267,6 @@
     <!-- http://purl.obolibrary.org/obo/MONDO_0018630 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0018630">
-        <mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
         <mondo:should_conform_to rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/OMIM_phenotypic_series.yaml"/>
     </owl:Class>
 
@@ -54749,7 +54718,6 @@
     <!-- http://purl.obolibrary.org/obo/MONDO_0024351 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024351">
-        <mondo:excluded_from_qc_check rdf:resource="http://purl.obolibrary.org/obo/mondo/sparql/qc/general/qc-single-child.sparql"/>
         <terms:conformsTo rdf:resource="http://purl.obolibrary.org/obo/mondo/patterns/hereditary.yaml"/>
     </owl:Class>
 
@@ -59992,5 +59960,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
 
diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt
@@ -731,6 +731,7 @@ http://purl.obolibrary.org/obo/GO_0007265
 http://purl.obolibrary.org/obo/GO_0007267
 http://purl.obolibrary.org/obo/GO_0007268
 http://purl.obolibrary.org/obo/GO_0007269
+http://purl.obolibrary.org/obo/GO_0007271
 http://purl.obolibrary.org/obo/GO_0007272
 http://purl.obolibrary.org/obo/GO_0007274
 http://purl.obolibrary.org/obo/GO_0007275
@@ -1072,6 +1073,9 @@ http://purl.obolibrary.org/obo/GO_0014052
 http://purl.obolibrary.org/obo/GO_0014053
 http://purl.obolibrary.org/obo/GO_0014054
 http://purl.obolibrary.org/obo/GO_0014055
+http://purl.obolibrary.org/obo/GO_0014056
+http://purl.obolibrary.org/obo/GO_0014057
+http://purl.obolibrary.org/obo/GO_0014058
 http://purl.obolibrary.org/obo/GO_0014059
 http://purl.obolibrary.org/obo/GO_0014060
 http://purl.obolibrary.org/obo/GO_0014061
@@ -1131,6 +1135,7 @@ http://purl.obolibrary.org/obo/GO_0015837
 http://purl.obolibrary.org/obo/GO_0015844
 http://purl.obolibrary.org/obo/GO_0015849
 http://purl.obolibrary.org/obo/GO_0015850
+http://purl.obolibrary.org/obo/GO_0015870
 http://purl.obolibrary.org/obo/GO_0015872
 http://purl.obolibrary.org/obo/GO_0015874
 http://purl.obolibrary.org/obo/GO_0015888
@@ -1578,6 +1583,9 @@ http://purl.obolibrary.org/obo/GO_0032114
 http://purl.obolibrary.org/obo/GO_0032147
 http://purl.obolibrary.org/obo/GO_0032217
 http://purl.obolibrary.org/obo/GO_0032218
+http://purl.obolibrary.org/obo/GO_0032222
+http://purl.obolibrary.org/obo/GO_0032223
+http://purl.obolibrary.org/obo/GO_0032224
 http://purl.obolibrary.org/obo/GO_0032228
 http://purl.obolibrary.org/obo/GO_0032229
 http://purl.obolibrary.org/obo/GO_0032230
@@ -2843,6 +2851,7 @@ http://purl.obolibrary.org/obo/GO_0061370
 http://purl.obolibrary.org/obo/GO_0061448
 http://purl.obolibrary.org/obo/GO_0061458
 http://purl.obolibrary.org/obo/GO_0061512
+http://purl.obolibrary.org/obo/GO_0061526
 http://purl.obolibrary.org/obo/GO_0061534
 http://purl.obolibrary.org/obo/GO_0061535
 http://purl.obolibrary.org/obo/GO_0061547
@@ -3340,6 +3349,7 @@ http://purl.obolibrary.org/obo/GO_1901360
 http://purl.obolibrary.org/obo/GO_1901361
 http://purl.obolibrary.org/obo/GO_1901362
 http://purl.obolibrary.org/obo/GO_1901363
+http://purl.obolibrary.org/obo/GO_1901374
 http://purl.obolibrary.org/obo/GO_1901401
 http://purl.obolibrary.org/obo/GO_1901402
 http://purl.obolibrary.org/obo/GO_1901403

diff --git a/src/ontology/imports/hgnc_import.obo b/src/ontology/imports/hgnc_import.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: mondo/releases/2021-08-03/imports/hgnc_import.owl
+data-version: mondo/releases/2021-08-10/imports/hgnc_import.owl
 ontology: mondo/imports/hgnc_import
 
 [Term]
@@ -11192,6 +11192,11 @@ id: http://identifiers.org/hgnc/30262
 name: PYCR2
 is_a: SO:0000704
 
+[Term]
+id: http://identifiers.org/hgnc/303
+name: AEBP1
+is_a: SO:0000704
+
 [Term]
 id: http://identifiers.org/hgnc/30304
 name: RGS9BP

diff --git a/src/ontology/imports/hp_terms.txt b/src/ontology/imports/hp_terms.txt
@@ -1100,6 +1100,7 @@ http://purl.obolibrary.org/obo/HP_0033747
 http://purl.obolibrary.org/obo/HP_0033796
 http://purl.obolibrary.org/obo/HP_0033799
 http://purl.obolibrary.org/obo/HP_0033835
+http://purl.obolibrary.org/obo/HP_0033836
 http://purl.obolibrary.org/obo/HP_0040006
 http://purl.obolibrary.org/obo/HP_0040064
 http://purl.obolibrary.org/obo/HP_0040066

diff --git a/src/ontology/imports/pato_terms.txt b/src/ontology/imports/pato_terms.txt
@@ -21,6 +21,7 @@ http://purl.obolibrary.org/obo/PATO_0000387
 http://purl.obolibrary.org/obo/PATO_0000389
 http://purl.obolibrary.org/obo/PATO_0000402
 http://purl.obolibrary.org/obo/PATO_0000404
+http://purl.obolibrary.org/obo/PATO_0000406
 http://purl.obolibrary.org/obo/PATO_0000407
 http://purl.obolibrary.org/obo/PATO_0000411
 http://purl.obolibrary.org/obo/PATO_0000460
@@ -73,6 +74,7 @@ http://purl.obolibrary.org/obo/PATO_0001401
 http://purl.obolibrary.org/obo/PATO_0001402
 http://purl.obolibrary.org/obo/PATO_0001404
 http://purl.obolibrary.org/obo/PATO_0001405
+http://purl.obolibrary.org/obo/PATO_0001406
 http://purl.obolibrary.org/obo/PATO_0001407
 http://purl.obolibrary.org/obo/PATO_0001410
 http://purl.obolibrary.org/obo/PATO_0001411
@@ -98,6 +100,8 @@ http://purl.obolibrary.org/obo/PATO_0001579
 http://purl.obolibrary.org/obo/PATO_0001580
 http://purl.obolibrary.org/obo/PATO_0001581
 http://purl.obolibrary.org/obo/PATO_0001591
+http://purl.obolibrary.org/obo/PATO_0001592
+http://purl.obolibrary.org/obo/PATO_0001593
 http://purl.obolibrary.org/obo/PATO_0001655
 http://purl.obolibrary.org/obo/PATO_0001656
 http://purl.obolibrary.org/obo/PATO_0001657
@@ -182,6 +186,7 @@ http://purl.obolibrary.org/obo/PATO_0002478
 http://purl.obolibrary.org/obo/PATO_0002505
 http://purl.obolibrary.org/obo/PATO_0002507
 http://purl.obolibrary.org/obo/PATO_0010001
+http://purl.obolibrary.org/obo/PATO_0010006
 http://purl.obolibrary.org/obo/PATO_0015008
 http://purl.obolibrary.org/obo/PATO_0015021
 http://purl.obolibrary.org/obo/PATO_0015022

diff --git a/src/ontology/imports/ro_terms.txt b/src/ontology/imports/ro_terms.txt
@@ -1845,6 +1845,7 @@ http://purl.obolibrary.org/obo/UBERON_0003932
 http://purl.obolibrary.org/obo/UBERON_0003933
 http://purl.obolibrary.org/obo/UBERON_0003937
 http://purl.obolibrary.org/obo/UBERON_0003942
+http://purl.obolibrary.org/obo/UBERON_0003946
 http://purl.obolibrary.org/obo/UBERON_0003947
 http://purl.obolibrary.org/obo/UBERON_0003952
 http://purl.obolibrary.org/obo/UBERON_0003953
@@ -1853,6 +1854,7 @@ http://purl.obolibrary.org/obo/UBERON_0003959
 http://purl.obolibrary.org/obo/UBERON_0003963
 http://purl.obolibrary.org/obo/UBERON_0003967
 http://purl.obolibrary.org/obo/UBERON_0003968
+http://purl.obolibrary.org/obo/UBERON_0003970
 http://purl.obolibrary.org/obo/UBERON_0003975
 http://purl.obolibrary.org/obo/UBERON_0003978
 http://purl.obolibrary.org/obo/UBERON_0003980
@@ -1925,6 +1927,7 @@ http://purl.obolibrary.org/obo/UBERON_0004177
 http://purl.obolibrary.org/obo/UBERON_0004178
 http://purl.obolibrary.org/obo/UBERON_0004180
 http://purl.obolibrary.org/obo/UBERON_0004182
+http://purl.obolibrary.org/obo/UBERON_0004183
 http://purl.obolibrary.org/obo/UBERON_0004184
 http://purl.obolibrary.org/obo/UBERON_0004185
 http://purl.obolibrary.org/obo/UBERON_0004188