Releases: monarch-initiative/mondo
Releases · monarch-initiative/mondo
2018-06-08 release
2018-06-01 release
2018-05-29 release
New classes:
- vascular bone neoplasm
- glioma susceptibility 1
- familial chronic mucocutaneous candidiasis
- papillary urothelial hyperplasia
- tumor grading characteristic
- nail infection
- general tumor grading characteristic
- dermatosis of eyelid
- eccrine sweat gland hamartoma
- skin appendage disease
- urothelial hyperplasia
- spondyloarthropathy, susceptibility to
- familial acne inversa
- reactive thrombocytosis
- schwannomatosis 1
- renal hypodysplasia/aplasia 1
- appendix neuroendocrine neoplasm
- duodenal neuroendocrine neoplasm
- digestive system neuroendocrine neoplasm
- gallbladder neuroendocrine neoplasm
- disorder of anatomical region
- enterochromaffin cell serotonin-producing pancreatic neuroendocrine tumor
- aniridia 1
- Adams-Oliver syndrome 1
- epilepsy, hot water, 1
- bethlem myopathy 1
- otofaciocervical syndrome 1
- myopathy, tubular aggregate, 1
- Dowling-Degos disease 1
- pulmonary hypertension, primary, 1
- glucocorticoid deficiency 1
- Singleton-Merten syndrome 1
- basal ganglia calcification, idiopathic, 1
- Brown-Vialetto-van Laere syndrome 1
- choroidal dystrophy, central areolar, 1
- AAA1
- renal hypodysplasia/aplasia 3
- aortic valve disease 1
- amyloidosis, primary localized cutaneous, 1
- FRTS1
- DUH1
- GFND1
- Zimmermann-Laband syndrome 1
- MVP1
- progressive external ophthalmoplegia with mitochondrial dna deletions, autosomal dominant 1
- linear skin defects with multiple congenital anomalies 1
- lymphoproliferative syndrome, X-linked, 1
- D-2-hydroxyglutaric aciduria 1
- myopathy, lactic acidosis, and sideroblastic anemia 1
- epilepsy, familial focal, with variable foci 1
- megalencephalic leukoencephalopathy with subcortical cysts 1
- radioulnar synostosis with amegakaryocytic thrombocytopenia 1
- ataxia-telangiectasia-like disorder 1
- frontometaphyseal dysplasia 1
- AAT1
- trichohepatoenteric syndrome 1
- Jervell and Lange-Nielsen syndrome 1
- brittle cornea syndrome 1
- cerebellar ataxia, mental retardation, and dysequilibrium syndrome 1
- Miyoshi muscular dystrophy 1
- Heimler syndrome 1
- pancreatic agenesis 1
- hypertrophic osteoarthropathy, primary, autosomal recessive, 1
- MCOPCB1
- peeling skin syndrome 1
- hyperparathyroidism 4
- herpes simplex encephalitis, susceptibility to, 1
- sick sinus syndrome 1
- ectodermal dysplasia-syndactyly syndrome 1
- cerebroretinal microangiopathy with calcifications and cysts 1
- hypotonia, infantile, with psychomotor retardation and characteristic facies 1
- febrile seizures, familial, 11
- OPA8
- infantile liver failure syndrome 1
- macular dystrophy, vitelliform, 3
- PDA1
- squamous cell intraepithelial neoplasia
- intraepithelial neoplasia
- liver and intrahepatic bile duct neoplasm
- epithelial neoplasm of rectum
- epithelial tumor of colon
- mesenchymal hamartoma
- Astrakhan spotted fever
- Boutonneuse fever
- tumor grade 3 or 4, general grading system
- tumor grade 2 or 3, general grading system
- tumor grade 1, general grading system
- tumor grade X, general grading system
- tumor grade 3, general grading system
- tumor grade 2, general grading system
- tumor grade 1 or 2, general grading system
- tumor grade 4, general grading system
2018-05-20 release
New products:
This release includes a new product, mondo-minimal, which released under a CC0 license. This includes all logical axioms (including inter-ontology linkages) plus labels and xrefs. It excludes textual definitions, synonyms, axiom annotations and other metadata.
It is available in 3 equivalent formats
- http://purl.obolibrary.org/obo/mondo/subsets/mondo-minimal.owl
- http://purl.obolibrary.org/obo/mondo/subsets/mondo-minimal.obo
- http://purl.obolibrary.org/obo/mondo/subsets/mondo-minimal.json
Skos axioms:
The main OWL release now includes experimental skos axioms that link to other disease concepts
- exactMatch triples shadow reliable equivalence axioms asserted in MONDO
- for all externally asserted cross-references (xrefs) we attempt to clarify these by adding a skos triple
- broad/narrow if we believe subClassOf/superClassOf
- closeMatch otherwise
New classes:
- Aeromonas hydrophila intestinal disease
- non-inflammatory vasculopathy
- benign chondrogenic neoplasm
- pituitary hormone deficiency, combined, 1
- ovarian dysgenesis 1
- facial paresis, hereditary congenital, 1
- surfactant metabolism dysfunction, pulmonary, 2
- anterior pituitary gland disease
- apocrine sweat gland disease
- chondrogenic neoplasm
- obsolete herpesviridae infections
- familial cutaneous melanoma
- angiomatosis
2018-05-18 release
2018-05-18 Release
Highlights:
- Fixed iridodysgenesis confusion, fixes #203
- fixing danglers #156
- fixing danglers #156
- fixing obsoletes, #156
- removing envo mireot #144
- changed label of MONDO_0022428 to aluminosis
- addresses #79
- added synonym to MONDO_0007191
- address #122
- revised label and def, addresses #122
New classes:
- chronic endometritis
- vitamin D-dependent rickets
- vitamin deficiency disorder
- vascular malformation
- enuresis
- polyposis, gastric, Dos Santos and de Magalhaes 1980
- gastrointestinal polyp
- skin disease caused by bacterial infection
- skin disease caused by infection
- nutritional or metabolic disease
- vascular neoplasm
- hyperbilirubinemia
- congenital vascular malformation
- disorder of bilirubin metabolism
- polyarticular arthritis
- malignant ovarian mucinous tumor
- juvenile chronic polyarthritis
- demodicidosis of sebaceous gland
- demodex folliculitis
- benign blood vessel neoplasm
- epsilon-heavy chain disease
- angiodysplasia of stomach
- cancer of short bone of upper limb
- cancer affecting bone of limb skeleton
- parasitemia
- staphylococcal infection
- physiological malfunction arising from mental factor
- parasitic endophthalmitis
- viral infection of central nervous system
- chronic pain syndrome
- acquired mineral metabolism disease
- hypophosphatemic rickets
- external hirudiniasis
- internal hirudiniasis
- acquired hyperprolactinemia
- ichthyosis vulgaris
- prothrombin deficiency
- acquired lactic acidosis
- neuropathy, hereditary sensory and autonomic, type 2A
- pseudoxanthoma elasticum (inherited or acquired)
- perennial allergic rhinitis
- colorectal carcinoma
- peripheral nerve lesion
- sciatica
- vulvar adenocarcinoma
- retrobulbar neuritis
- mucinous neoplasm
- urothelial neoplasm
- infectious otitis media
- lymph node neoplasm
- disorder of GPI anchor biosynthesis
- inner ear neoplasm
- glomangiomyoma
- disorder of glycosylation
- cutaneous glomangiomyoma
- chronic renal failure syndrome
- pleural adenomatoid tumor
- retinal cell neoplasm
- retinal neuroblastoma
2018-04-29 release
v2018-04-29 new release
2018-04-15 release
New classes
- chronic endometritis
- vitamin D-dependent rickets
- vitamin deficiency disorder
- vascular malformation
- enuresis
- polyposis, gastric, Dos Santos and de Magalhaes 1980
- gastrointestinal polyp
- skin disease caused by bacterial infection
- skin disease caused by infection
- nutritional or metabolic disease
- vascular neoplasm
- hyperbilirubinemia
- congenital vascular malformation
- disorder of bilirubin metabolism
- polyarticular arthritis
- malignant ovarian mucinous tumor
- juvenile chronic polyarthritis
- demodicidosis of sebaceous gland
- demodex folliculitis
- benign blood vessel neoplasm
- epsilon-heavy chain disease
- angiodysplasia of stomach
- cancer of short bone of upper limb
- cancer affecting bone of limb skeleton
- parasitemia
- staphylococcal infection
- physiological malfunction arising from mental factor
- parasitic endophthalmitis
- viral infection of central nervous system
- chronic pain syndrome
- acquired mineral metabolism disease
- hypophosphatemic rickets
- external hirudiniasis
- internal hirudiniasis
- acquired hyperprolactinemia
- ichthyosis vulgaris
- prothrombin deficiency
- acquired lactic acidosis
- neuropathy, hereditary sensory and autonomic, type 2A
- pseudoxanthoma elasticum (inherited or acquired)
- perennial allergic rhinitis
- colorectal carcinoma
- peripheral nerve lesion
- sciatica
- vulvar adenocarcinoma
- retrobulbar neuritis
- mucinous neoplasm
- urothelial neoplasm
- infectious otitis media
- lymph node neoplasm
- disorder of GPI anchor biosynthesis
- inner ear neoplasm
- glomangiomyoma
- disorder of glycosylation
- cutaneous glomangiomyoma
- chronic renal failure syndrome
- pleural adenomatoid tumor
- retinal cell neoplasm
- retinal neuroblastoma
2018-02-19 release (multiple new rare diseases)
This release incorporates many more rare diseases from the globalgenes rare list. Not all of these newly added terms are yet fully curated
New Terms
- MONDO:0021722 ! vulvodynia
- MONDO:0021723 ! vaginismus
- MONDO:0021725 ! Abderhalden-Kaufmann-Lignac syndrome
- MONDO:0021726 ! abdominal cystic lymphangioma
- MONDO:0021727 ! aberrant subclavian artery
- MONDO:0021745 ! psychosocial short stature
- MONDO:0021747 ! acanthamoeba infectious disease
- MONDO:0021752 ! Achard-Thiers syndrome
- MONDO:0021758 ! acquired agranulocytosis
- MONDO:0021759 ! acquired fructose intolerance
- MONDO:0021761 ! acral dysostosis dyserythropoiesis syndrome
- MONDO:0021762 ! acro coxo mesomelic dysplasia
- MONDO:0021764 ! acrofacial dysostosis preis type
- MONDO:0021805 ! acromesomelic dysplasia, Campailla Martinelli type
- MONDO:0021808 ! acute cholinergic dysautonomia
- MONDO:0021809 ! primary dysautonomia
- MONDO:0021811 ! acute mountain sickness
- MONDO:0021812 ! adnexal spiradenoma/cylindroma of a sweat gland
- MONDO:0021824 ! adult progressive spinal muscular atrophy, Aran Duchenne type
- MONDO:0021826 ! aerobic actinomyces infection
- MONDO:0021829 ! agnathia-microstomia-synotia
- MONDO:0021834 ! akaba hayasaka syndrome
- MONDO:0021836 ! aksu von stockhausen syndrome
- MONDO:0021838 ! Al Gazali Khidr Prem Chandran syndrome
- MONDO:0021845 ! Aloi Tomasini Isaia syndrome
- MONDO:0021849 ! alopecia macular degeneration growth retardation syndome
- MONDO:0021851 ! alopecia universalis onychodystrophy vitiligo
- MONDO:0021856 ! Alsing syndrome
- MONDO:0021879 ! anaplastic small cell lymphoma
- MONDO:0021896 ! anterior spinal artery stroke
- MONDO:0021902 ! aortopulmonary window
- MONDO:0021905 ! Apert-like polydactyly syndrome
- MONDO:0021907 ! aplasia cutis autosomal recessive
- MONDO:0021908 ! aplasia cutis congenita dominant
- MONDO:0021909 ! aplasia cutis congenita recessive
- MONDO:0021910 ! aplasia cutis myopia
- MONDO:0021913 ! aquagenic pruritus
- MONDO:0021915 ! arakawa syndrome 2
- MONDO:0021918 ! arena syndrome
- MONDO:0021921 ! arnold stickler bourne syndrome
- MONDO:0021923 ! Arroyo Garcia Cimadevilla syndrome
- MONDO:0021927 ! arthrogryposis epileptic seizures migrational brain disorder
- MONDO:0021935 ! aspergillus niger infection
- MONDO:0021937 ! Asrar Facharzt Haque syndrome
- MONDO:0021944 ! auditory neuropathy
- MONDO:0021945 ! hearing disorder
- MONDO:0021950 ! autoimmune oophoritis
- MONDO:0021952 ! autoimmune progesterone dermatitis
- MONDO:0021957 ! autosomal recessive nonsyndromic congenital nuclear cataract
- MONDO:0021962 ! baetz-greenwalt syndrome
- MONDO:0021964 ! bagatelle cassidy syndrome
- MONDO:0021966 ! Baker Vinters syndrome
- MONDO:0021969 ! Banti syndrome
- MONDO:0021971 ! Baraitser Rodeck Garner syndrome
- MONDO:0021977 ! basaloid follicular hamartoma
- MONDO:0021979 ! Basaran Yilmaz syndrome
- MONDO:0021994 ! Berk-Tabatznik syndrome
- MONDO:0022011 ! bobble-head doll syndrome
- MONDO:0022013 ! Boerhaave syndrome
- MONDO:0022018 ! Borrone di Rocco Crovato syndrome
- MONDO:0022020 ! boudhina yedes khiari syndrome
- MONDO:0022022 ! bowenoid papulosis
- MONDO:0022025 ! boylan dew greco syndrome
- MONDO:0022055 ! Calabro syndrome
- MONDO:0022057 ! calcifying epithelial odontogenic tumor
- MONDO:0022060 ! calloso-genital dysplasia
- MONDO:0022067 ! cantu sanchez-corona fragoso syndrome
- MONDO:0022070 ! cantu sanchez-corona hernandez syndrome
- MONDO:0022071 ! carbon baby syndrome
- MONDO:0022089 ! carnevale hernandez castillo syndrome
- MONDO:0022094 ! Cartwright Nelson Fryns syndrome
- MONDO:0022098 ! catamenial pneumothorax
- MONDO:0022109 ! catatrichy
- MONDO:0022113 ! central centrifugal cicatricial alopecia
- MONDO:0022140 ! Charles Bonnet syndrome
- MONDO:0022151 ! Chitty Hall Webb syndrome
- MONDO:0022171 ! chromhidrosis
- MONDO:0022173 ! chromosome 11q trisomy
- MONDO:0022174 ! chromosome 12p deletion
- MONDO:0022177 ! chromosome 13q trisomy
- MONDO:0022178 ! chromosome 13q-mosaicism
- MONDO:0022180 ! chromosome 16 trisomy
- MONDO:0022196 ! chronic erosive gastritis
- MONDO:0022200 ! treatment for disease
- MONDO:0022201 ! has treatment by surgery
- MONDO:0022236 ! colpocephaly
- MONDO:0022263 ! congenital hepatic fibrosis
- MONDO:0022266 ! congenital hepatic fibrosis
- MONDO:0022267 ! congenital herpes simplex
- MONDO:0022308 ! corticobasal degeneration disorder
- MONDO:0022311 ! cote katsantoni syndrome
- MONDO:0022314 ! Hernandez Aguirre-Negrete syndrome
- MONDO:0022316 ! hair defect with photosensitivity and intellectual disability syndrome
- MONDO:0022321 ! 2-methylacetoacetyl coa thiolase deficiency
- MONDO:0022323 ! 2-hydroxyethyl methacrylate sensitization
- MONDO:0022326 ! 3 methylcrotonyl-coa carboxylase 1 deficiency
- MONDO:0022330 ! 4-hydroxyphenylacetic aciduria
- MONDO:0022333 ! 5-nucleotidase syndrome
- MONDO:0022337 ! AIDS dysmorphic syndrome
- MONDO:0022338 ! ALK+ histiocytosis
- MONDO:0022349 ! congenital ab...
2018-01-05 release
v2018-01-05 nr
2017-12-15 release
New terms
(there may be delay in these appearing in ontobee)
- MONDO:0021055 ! classic familial adenomatous polyposis
- MONDO:0021056 ! familial adenomatous polyposis 1
- MONDO:0021057 ! classic or attenuated familial adenomatous polyposis
- MONDO:0021058 ! neoplastic syndrome
- MONDO:0021059 ! head and neck disease
- MONDO:0021060 ! RASopathy
- MONDO:0021061 ! neurofibromatosis
- MONDO:0021062 ! hereditary acrokeratotic poikiloderma of Kindler-Weary
- MONDO:0021063 ! malignant colon neoplasm
- MONDO:0021064 ! jugulotympanic paraganglioma
- MONDO:0021065 ! pleural neoplasm
- MONDO:0021066 ! urinary system neoplasm
- MONDO:0021067 ! mediastinal germ cell tumor
- MONDO:0021068 ! ovarian neoplasm
- MONDO:0021069 ! malignant endocrine neoplasm
- MONDO:0021070 ! sublingual gland carcinoma
- MONDO:0021071 ! laryngeal neoplasm
- MONDO:0021072 ! sympathetic paraganglioma
- MONDO:0021073 ! paraneoplastic syndrome
- MONDO:0021074 ! precancerous condition
- MONDO:0021075 ! neoplastic polyp
- MONDO:0021076 ! pancreatic exocrine neoplasm
- MONDO:0021077 ! cystic neoplasm
- MONDO:0021078 ! glandular papilloma
- MONDO:0021079 ! childhood neoplasm
- MONDO:0021080 ! blood vessel neoplasm
- MONDO:0021081 ! anti-NMDA receptor encephalitis
- MONDO:0021082 ! Meckel diverticulum neoplasm
- MONDO:0021083 ! congenital fibrosis of extraocular muscles type 1
- MONDO:0021084 ! vision disorder
- MONDO:0021085 ! gastric neoplasm
- MONDO:0021086 ! gingival neoplasm
- MONDO:0021088 ! papillary meningioma
- MONDO:0021089 ! peripheral nervous system cancer
- MONDO:0021090 ! lipid-rich breast carcinoma
- MONDO:0021091 ! papillary cystadenoma
- MONDO:0021092 ! fallopian tube neoplasm
- MONDO:0021093 ! cranioectodermal dysplasia 1
- MONDO:0021094 ! immunodeficiency syndrome
- MONDO:0021095 ! parkinsonian disorder