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Issues list

Add Phenopacket extraction template
#482 opened Nov 21, 2024 by caufieldjh
1
Test on Python 3.13 bug Something isn't working documentation Improvements or additions to documentation
#480 opened Nov 21, 2024 by caufieldjh
This error originates from a subprocess bug Something isn't working
#474 opened Nov 10, 2024 by SaraNiknamHesar
13
Using OntoGPT outside BioInformatics question Further information is requested template A request for a new or modified template
#471 opened Nov 8, 2024 by jamesfebin
6
Don't raise errors when attempting to parse "accessory" text enhancement New feature or request
#466 opened Oct 25, 2024 by caufieldjh
Add error flag for extracted objects enhancement New feature or request
#456 opened Sep 18, 2024 by caufieldjh
Do not cache fully empty responses enhancement New feature or request
#455 opened Sep 18, 2024 by caufieldjh
1
Remove Unicode control characters enhancement New feature or request
#454 opened Sep 18, 2024 by caufieldjh
TALISMAN: update to work with non-OpenAI models
#450 opened Sep 6, 2024 by caufieldjh
Add parser for dataframes enhancement New feature or request
#446 opened Aug 26, 2024 by caufieldjh
Support including system messages in templates enhancement New feature or request
#436 opened Aug 13, 2024 by caufieldjh
Make missing API key errors more friendly enhancement New feature or request
#368 opened Apr 29, 2024 by caufieldjh
Add grounding refiner option for SPIRES enhancement New feature or request
#361 opened Apr 1, 2024 by caufieldjh
Followup on #353 - support including annotations in schemas to model KGX output enhancement New feature or request
#356 opened Mar 26, 2024 by caufieldjh
1
Best way to apply on large quantities of documents?
#352 opened Mar 22, 2024 by serenalotreck
19
Using value set expansion with non-OBO annotator leads to 404 error
#347 opened Mar 15, 2024 by caufieldjh
2
industrial-production-specific SPIRES template A request for a new or modified template
#340 opened Feb 27, 2024 by caufieldjh
2
Provide equivalencies for phenotype terms enhancement New feature or request
#334 opened Feb 13, 2024 by caufieldjh
6
Passthrough function to provide annotations to extraction output enhancement New feature or request
#333 opened Feb 12, 2024 by caufieldjh
Provide function to include provided annotations for extractions enhancement New feature or request
#332 opened Feb 12, 2024 by caufieldjh
Preprocess to remove brackets and other punctuation before attempting grounding enhancement New feature or request
#323 opened Feb 7, 2024 by caufieldjh
Show original label from matched entities in extraction results enhancement New feature or request
#318 opened Feb 2, 2024 by caufieldjh
Add function to aggregate dataset metadata from multiple sources enhancement New feature or request
#314 opened Jan 31, 2024 by caufieldjh
1
Can we specify the range of annotator? enhancement New feature or request
#290 opened Dec 13, 2023 by kluo9
OntoGPT vs CurateGPT documentation Improvements or additions to documentation
#287 opened Dec 6, 2023 by ddooley
1
ProTip! What’s not been updated in a month: updated:<2024-10-28.