From d92c45717c849973a77408afbe858567063befeb Mon Sep 17 00:00:00 2001
From: Morgan Mayer <mayermo@oregonstate.edu>
Date: Mon, 7 Mar 2022 09:29:05 -0800
Subject: [PATCH] changes

---
 .DS_Store                                     | Bin 0 -> 6148 bytes
 README.md                                     |  21 ------------------
 .../med_search.yaml                           |   0
 .../narrow_search.yaml                        |   0
 .../wide_search.yaml                          |   0
 HC_input.yaml => input_files/HC_input.yaml    |   0
 MW_input.yaml => input_files/MW_input.yaml    |   0
 .../fp_c_input.yaml                           |   0
 .../mp_c_input.yaml                           |   0
 9 files changed, 21 deletions(-)
 create mode 100644 .DS_Store
 rename med_search.yaml => hyperparameter_searches/med_search.yaml (100%)
 rename narrow_search.yaml => hyperparameter_searches/narrow_search.yaml (100%)
 rename wide_search.yaml => hyperparameter_searches/wide_search.yaml (100%)
 rename HC_input.yaml => input_files/HC_input.yaml (100%)
 rename MW_input.yaml => input_files/MW_input.yaml (100%)
 rename fp_c_input.yaml => input_files/fp_c_input.yaml (100%)
 rename mp_c_input.yaml => input_files/mp_c_input.yaml (100%)

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new file mode 100644
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diff --git a/README.md b/README.md
index aa3214d..702ba6e 100644
--- a/README.md
+++ b/README.md
@@ -21,27 +21,6 @@ Creates data visualizations of property and spectra patterns with whole dataset.
 
 ## Folders and organization
 
-### data
-
-#### spectra
-raw spectra csv files for real experimental FTIR spectra for neat and blend fuels.
-
-#### interpolated_spectra
-artificial spectra created from make_artificial_spectra.ipynb
-
-#### interpolated_spectra_analysis
-
-contains csv files of R2 correlation fits of polyfits at each wavenumber and percent differences in absorbance agreement for artificial spectra made at compositions there is real spectra for. This is to analyze the performance of the polyfit method to synthesize FTIR spectra. Plots are stored in data/interpolated_spectra_analysis.
-
-### plots
-
-#### spectra_plots
-contains plots of all spectra real and artificial.
-
-#### interpolated_spectra_analysis
-
-contains csv files of R2 correlation fits of polyfits at each wavenumber and percent differences in absorbance agreement for artificial spectra made at compositions there is real spectra for. This is to analyze the performance of the polyfit method to synthesize FTIR spectra. Plots of this data is stored in data/interpolated_spectra_analysis.
-
 ### input_files
 
 Contains input files in yaml format for model comparison runs.
diff --git a/med_search.yaml b/hyperparameter_searches/med_search.yaml
similarity index 100%
rename from med_search.yaml
rename to hyperparameter_searches/med_search.yaml
diff --git a/narrow_search.yaml b/hyperparameter_searches/narrow_search.yaml
similarity index 100%
rename from narrow_search.yaml
rename to hyperparameter_searches/narrow_search.yaml
diff --git a/wide_search.yaml b/hyperparameter_searches/wide_search.yaml
similarity index 100%
rename from wide_search.yaml
rename to hyperparameter_searches/wide_search.yaml
diff --git a/HC_input.yaml b/input_files/HC_input.yaml
similarity index 100%
rename from HC_input.yaml
rename to input_files/HC_input.yaml
diff --git a/MW_input.yaml b/input_files/MW_input.yaml
similarity index 100%
rename from MW_input.yaml
rename to input_files/MW_input.yaml
diff --git a/fp_c_input.yaml b/input_files/fp_c_input.yaml
similarity index 100%
rename from fp_c_input.yaml
rename to input_files/fp_c_input.yaml
diff --git a/mp_c_input.yaml b/input_files/mp_c_input.yaml
similarity index 100%
rename from mp_c_input.yaml
rename to input_files/mp_c_input.yaml