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rdmorin authored Dec 4, 2024
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### DLBCL

The master curated gene list for DLBCL including all genes nominated by any exome/genome-wide study can be found in this directory in `dlbcl_genes.tsv` or [here](dlbcl_genes.tsv). Most of the columns in this file are self-explanatory. The earliest_support column is meant to refer to the PubMed ID of the first study that nominated that gene as a significantly mutated gene in DLBCL. The columns Chapuy, Reddy and LymphGen indicate TRUE/FALSE for whether each gene was nominated/reported by that study. The next column (curated) is TRUE only for genes that have made it to the curated core list of DLBCL genes.
This file contains four additional columns, which respectively report the mutation frequency in the cohorts from Chapuy et al, Schmitz et al, Reddy et al If a gene has been identified from additional information, this is from our compendium of genomes in the GAMBL project. The Lacy column indicates whether the gene was sequenced by Lacy et al. The core gene list at the time this document was prepared is shown below along with a few key columns from the file. _This may not match the actual file, depending on whether this document is kept up to date. Please refer to the the file rather than this list._ The separate file `dlbcl_genes_with_mutation_frequencies.tsv` ([here](dlbcl_genes_with_mutation_frequencies.tsv)) is intended to include all genes nominated to be recurrently/significantly mutated in DLBCL. It contains columns indicating, where possible, which study nominated the gene.
The master curated gene list for DLBCL including all genes nominated by any exome/genome-wide study can be found in this directory in `dlbcl_genes.tsv` or [here](dlbcl_genes.tsv). Most of the columns in this file are self-explanatory. The citekey and PMID columns respectively refer to the BibTex citekey and PubMed ID of the first study that nominated that gene as a significantly mutated gene in DLBCL.
The core gene list at the time this document was prepared is shown below. _This may not match the actual file, depending on whether this document is kept up to date. Please refer to [this file](dlbcl_genes.tsv) rather than the table you see below._



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