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update DLBCL
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@rdmorin
rdmorin committed Nov 27, 2024
1 parent 3013e7c commit 1755674
Showing 1 changed file with 17 additions and 16 deletions.
33 changes: 17 additions & 16 deletions resources/curated/dlbcl_genes.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -124,9 +124,11 @@ ZC3H12A 1 FALSE NA chapuyMolecularSubtypesDiffuse2018 29713087 LOF 19747262 ska
ZFP36L1 1 TRUE NA morinFrequentMutationHistonemodifying2011 21796119 TRUE
ZNF292 1 FALSE NA reddyGeneticFunctionalDrivers2017 28985567 FALSE
ZNF608 1 FALSE NA NA morinMutationalStructuralAnalysis2013 23699601 FALSE
LCOR 1 FALSE NA novakWholeexomeAnalysisReveals2015 26314988 FALSE
ARAP2 2 FALSE NA morinMutationalStructuralAnalysis2013 23699601
ADAMTSL3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
AKAP8 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
ALDH3A2 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
ANKLE2 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
HIST1H3A 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534
BCL2L10 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
Expand All @@ -145,10 +147,10 @@ ANKRD17 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
ARID5B 2 FALSE PASS 4 reddyGeneticFunctionalDrivers2017 28985567 FALSE
ASXL3 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017 28327945 FALSE
ATR 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
BAI1 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
BCL11A 2 TRUE NA chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
BCR 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
BIRC3 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
BLK 2 TRUE NA NA NA NA FALSE
BRINP3 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
BTBD3 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
CADPS2 2 FALSE PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
Expand All @@ -164,12 +166,14 @@ CDH9 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
CEP164 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017 28327945 FALSE
CNOT2 2 FALSE PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
CNTNAP5 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 23699601 FALSE
COL12A1 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
COQ7 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
CPS1 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
CRIP1 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
CXCR5 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
DAZAP1 2 FALSE NA pararajalingamCodingNoncodingDrivers2020 32160292 FALSE
DDX10 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
DIAPH2 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
DHX16 2 FALSE PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
DNAH5 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 23699601 FALSE
DNM2 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
Expand All @@ -181,13 +185,9 @@ EIF2AK3 2 TRUE NA NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
DSC3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
DSEL 2 FALSE NA morinMutationalStructuralAnalysis2013 23699601
ERAP2 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017 28327945 FALSE
EZR 2 TRUE NA NA NA NA FALSE
FAM102A 2 TRUE NA NA NA NA FALSE
FANK1 2 TRUE NA NA NA NA FALSE
FAT2 2 FALSE NA morinFrequentMutationHistonemodifying2011 21796119 FALSE
FAT4 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
FCRL3 2 TRUE NA NA NA NA FALSE
FNBP1 2 TRUE NA NA NA NA FALSE
FBLN2 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
DUSP27 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
DUSP9 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
FOXC1 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 TRUE
Expand All @@ -200,6 +200,7 @@ GPC5 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
GSG2 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
H1FOO 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
HDAC7 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
HEPH 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
HIST1H2AG 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
HIST1H2AL 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
HIST1H2BO 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
Expand All @@ -219,12 +220,12 @@ IRF1 2 TRUE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
JAK1 2 FALSE NA reddyGeneticFunctionalDrivers2017 28985567 FALSE
JAK3 2 FALSE NA reddyGeneticFunctionalDrivers2017 28985567 FALSE
KCMF1 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
KIAA1614 2 FALSE novakWholeexomeAnalysisReveals2015 26314988
KLHL21 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
KRTAP5-5 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
LAMA5 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
FBXO31 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
LAPTM5 2 TRUE PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
LCOR 1 FALSE NA novakWholeexomeAnalysisReveals2015 26314988 FALSE
LPP 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
LRP12 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
LYN 2 FALSE PASS 4 chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
Expand All @@ -234,17 +235,17 @@ MAP2K1 2 FALSE NA shinBRAFV600EMAP2K12015 25729732 FALSE
MCL1 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
MECOM 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
MET 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
MIR155HG 2 TRUE NA NA NA NA FALSE
MPDZ 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 23699601 FALSE
MSH6 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
MYBPC2 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
MYO19 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
MYOM2 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
NAV1 2 FALSE NA chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
NCOA3 2 TRUE NA NA NA NA FALSE
NEAT1 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
NF1 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
NLRP5 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
ODZ2 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
ODZ3 2 FALSE NA novakWholeexomeAnalysisReveals2015 26314988
OR6K3 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
P2RX5 2 TRUE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
PAPOLG 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
Expand All @@ -262,19 +263,18 @@ PNPO 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
PRKCB 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 23699601 FALSE
PRKDC 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 TRUE
PRPS1 2 FALSE PASS 4 chapuyMolecularSubtypesDiffuse2018 29713087 FALSE
PTPRD 2 FALSE NA NA drevalGeneticSubdivisionsFollicular2023 NA FALSE
PTPRD 2 FALSE NA NA drevalGeneticSubdivisionsFollicular2023 37084389 FALSE
RAC2 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
RAPGEF1 2 FALSE NA morinFrequentMutationHistonemodifying2011 21796119 FALSE
RCC 2 TRUE NA NA NA NA FALSE
RFTN1 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
RFXAP 2 FALSE NA NA NA NA FALSE
RHEX 2 TRUE NA NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
RHOH 2 TRUE NA pasqualucciHypermutationMultipleProtooncogenes2001 11460166 FALSE
RUBCNL 2 TRUE NA NA NA NA FALSE
S1PR1 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
SAMD9L 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 23699601 FALSE
HERC2 2 FALSE NA novakWholeexomeAnalysisReveals2015
SDK2 2 FALSE NA novakWholeexomeAnalysisReveals2015
SEC14L5 2 FALSE NA novakWholeexomeAnalysisReveals2015
SEL1L3 2 TRUE NA NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
SEPTIN9 2 TRUE NA NA NA NA FALSE
SERPINA9 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
SETD2 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
SETD5 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
Expand All @@ -300,7 +300,7 @@ TMSL3 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
TNF 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
TRAF3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
TRAF6 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
TRIP12 2 FALSE NA NA NA NA FALSE
TRIM2 2 FALSE NA novakWholeexomeAnalysisReveals2015
UBE2J1 2 TRUE NA schmitzGeneticsPathogenesisDiffuse2018 29641966 FALSE
UBR5 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017 28327945 FALSE
UHRF1BP1 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017 28327945 FALSE
Expand All @@ -310,7 +310,6 @@ UNC5D 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534 FALSE
USP7 2 FALSE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
WDFY3 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 23699601 FALSE
WNK1 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 FALSE
XBP1 2 TRUE NA NA NA FALSE
YY1 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 28985567 FALSE
ZCCHC7 2 TRUE NA arthurGenomewideDiscoverySomatic2018 30275490 FALSE
ZEB2 2 FALSE NA reddyGeneticFunctionalDrivers2017 28985567 FALSE
Expand All @@ -334,6 +333,8 @@ TSC22D1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
ZNF385B 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012 22343534
ZNF521 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
ZWILCH 2 FALSE NA pasqualucciAnalysisCodingGenome2011 21804550 FALSE
FGFRL1 2 FALSE NA novakWholeexomeAnalysisReveals2015
KIF1C 2 FALSE NA novakWholeexomeAnalysisReveals2015
CDH1 3 FALSE NA fanComprehensiveCharacterizationDriver2020 32565964
ABCA3 3 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
ABCA4 3 FALSE NA zhangGeneticHeterogeneityDiffuse2013 23292937 FALSE
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