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fill in missing references
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@rdmorin
rdmorin committed Aug 9, 2024
1 parent 4997c55 commit 1e23ea6
Showing 1 changed file with 36 additions and 14 deletions.
50 changes: 36 additions & 14 deletions resources/curated/dlbcl_genes.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -124,6 +124,13 @@ ZC3H12A 1 FALSE NA chapuyMolecularSubtypesDiffuse2018b FALSE 29713087 LOF 19747
ZFP36L1 1 TRUE NA morinFrequentMutationHistonemodifying2011 TRUE 21796119
ZNF292 1 FALSE NA reddyGeneticFunctionalDrivers2017 FALSE 23292937
ZNF608 1 FALSE NA NA morinMutationalStructuralAnalysis2013 FALSE 23292937
ADAMTSL3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
AKAP8 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ANKLE2 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
BCL2L10 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
BRSK1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
C12orf35 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
CAMTA1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ABI3BP 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
ADAMTS1 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
AICDA 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
Expand All @@ -133,16 +140,17 @@ ARID5B 2 FALSE PASS 4 reddyGeneticFunctionalDrivers2017 FALSE 28985567
ASXL3 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017a FALSE 28327945
ATR 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
BCL11A 2 TRUE NA chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
BCOR 2 FALSE NA NA NA FALSE NA
BCR 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
BIRC3 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
BLK 2 TRUE NA NA NA FALSE NA
BRINP3 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
BTBD3 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
CADPS2 2 FALSE PASS 4 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
CYTS5B 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
CASP8 2 FALSE NA 4 reddyGeneticFunctionalDrivers2017 FALSE 28985567
CD22 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
CD274 2 FALSE NA morinFrequentMutationHistonemodifying2011 FALSE 21796119
DCHS1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
CD36 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
CD44 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
CD74 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
Expand All @@ -153,7 +161,7 @@ CNTNAP5 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 FALSE 23699601
COQ7 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
CPS1 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
CRIP1 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
CXCR5 2 FALSE NA FALSE 29641966
CXCR5 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
DAZAP1 2 FALSE NA pararajalingamCodingNoncodingDrivers2020 FALSE 32160292
DDX10 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
DHX16 2 FALSE PASS 4 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
Expand All @@ -162,7 +170,9 @@ DNM2 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
DNMT3B 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017a FALSE 28327945
DOCK1 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
DSG4 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
EIF2AK3 2 TRUE NA NA NA FALSE NA
DPYD 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
EIF2AK3 2 TRUE NA NA schmitzGeneticsPathogenesisDiffuse2018a FALSE NA
DSC3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ERAP2 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017a FALSE 28327945
EZR 2 TRUE NA NA NA FALSE NA
FAM102A 2 TRUE NA NA NA FALSE NA
Expand All @@ -171,6 +181,8 @@ FAT2 2 FALSE NA morinFrequentMutationHistonemodifying2011 FALSE 21796119
FAT4 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
FCRL3 2 TRUE NA NA NA FALSE NA
FNBP1 2 TRUE NA NA NA FALSE NA
DUSP27 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
DUSP9 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
FOXC1 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a TRUE 29641966
FOXP1 2 TRUE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
FUBP1 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
Expand Down Expand Up @@ -203,6 +215,7 @@ KCMF1 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
KLHL21 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
KRTAP5-5 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
LAMA5 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
FBXO31 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
LAPTM5 2 TRUE PASS 4 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
LCOR 2 FALSE NA FALSE 30275490
LPP 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
Expand All @@ -218,15 +231,11 @@ MIR155HG 2 TRUE NA NA NA FALSE NA
MPDZ 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 FALSE 23699601
MSH6 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
MYBPC2 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
MYO1E 2 TRUE NA NA NA FALSE NA
MYOM2 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
NAV1 2 FALSE NA chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
NCOA3 2 TRUE NA NA NA FALSE NA
NCOR2 2 FALSE NA NA NA FALSE NA
NEAT1 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
NF1 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 28985567
NFKB1 2 FALSE NA NA NA FALSE NA
NLRC5 2 FALSE NA NA NA FALSE NA
NLRP5 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
ODZ3 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
OR6K3 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
Expand All @@ -235,7 +244,6 @@ PAPOLG 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
PASD1 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
PASK 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 FALSE 23699601
PAX5 2 TRUE NA pasqualucciHypermutationMultipleProtooncogenes2001a FALSE 11460166
PCBP1 2 FALSE NA NA NA FALSE NA
PCDHB11 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
PCDHB6 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
PCLO 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
Expand All @@ -244,13 +252,10 @@ PDS5B 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 FALSE 23699601
PIK3CD 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
PIK3R1 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
PNPO 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
PPP1R9B 2 FALSE NA NA NA FALSE NA
PRKCB 2 FALSE PASS 4 morinMutationalStructuralAnalysis2013 FALSE 23699601
PRKDC 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a TRUE 29641966
PRPS1 2 FALSE PASS 4 chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
PTMA 2 TRUE NA NA NA FALSE NA
PTPN1 2 TRUE NA NA NA FALSE NA
PTPRD 2 FALSE NA NA NA FALSE NA
PTPRD 2 FALSE NA NA drevalGeneticSubdivisionsFollicular2023 FALSE NA
RAC2 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
RAPGEF1 2 FALSE NA morinFrequentMutationHistonemodifying2011 FALSE 21796119
RCC 2 TRUE NA NA NA FALSE NA
Expand All @@ -261,7 +266,7 @@ RHOH 2 TRUE NA pasqualucciHypermutationMultipleProtooncogenes2001a FALSE NA
RUBCNL 2 TRUE NA NA NA FALSE NA
S1PR1 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
SAMD9L 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
SEL1L3 2 TRUE NA NA NA FALSE NA
SEL1L3 2 TRUE NA NA schmitzGeneticsPathogenesisDiffuse2018a FALSE NA
SEPTIN9 2 TRUE NA NA NA FALSE NA
SERPINA9 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
SETD2 2 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
Expand All @@ -275,6 +280,7 @@ SRPX 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
SRRM2 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
ST6GAL1 2 TRUE NA arthurGenomewideDiscoverySomatic2018 FALSE 30275490
STAT5B 2 FALSE NA reddyGeneticFunctionalDrivers2017 FALSE 23292937
HMGB1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
SYN2 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
SYPL1 2 FALSE PASS 3 morinMutationalStructuralAnalysis2013 FALSE 23699601
TAP1 2 FALSE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE 29641966
Expand All @@ -288,7 +294,7 @@ TNF 2 FALSE NA lohrDiscoveryPrioritizationSomatic2012a FALSE 22343534
TRAF3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
TRAF6 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
TRIP12 2 FALSE NA NA NA FALSE NA
UBE2J1 2 TRUE NA NA FALSE NA
UBE2J1 2 TRUE NA schmitzGeneticsPathogenesisDiffuse2018a FALSE NA
UBR5 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017a FALSE 23292937
UHRF1BP1 2 FALSE NA albuquerqueEnhancingKnowledgeDiscovery2017a FALSE 28327945
UNC5B 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
Expand All @@ -304,6 +310,22 @@ ZEB2 2 FALSE NA reddyGeneticFunctionalDrivers2017 FALSE 23292937
ZFX 2 FALSE PASS 3 reddyGeneticFunctionalDrivers2017 FALSE 28985567
ZNF217 2 FALSE PASS 3 hubschmannMutationalMechanismsShaping2021b FALSE 33953289
ZNF423 2 FALSE PASS 3 chapuyMolecularSubtypesDiffuse2018b FALSE 29713087
KDM2B 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
MAGEC3 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
MED12L 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
MTMR8 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
MYO1G 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
OFD1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
PMS1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
PPP2R5A 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
RASGEF1A 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
RGAG1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
SERPINA1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
SMARCA1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
TLL2 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
TSC22D1 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ZNF521 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ZWILCH 2 FALSE NA pasqualucciAnalysisCodingGenome2011 FALSE 21804550
ABCA3 3 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
ABCA4 3 FALSE NA zhangGeneticHeterogeneityDiffuse2013 FALSE 23292937
ABCB1 3 FALSE NA fanComprehensiveCharacterizationDriver2020b FALSE 32565964
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