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add extra support
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@rdmorin
rdmorin committed Nov 27, 2024
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Showing 1 changed file with 31 additions and 31 deletions.
62 changes: 31 additions & 31 deletions resources/curated/bl_genes.tsv
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Gene Tier aSHM QC Mean Variant Quality citekey PMID MutationEffect Mutation-PMID Additional_Support
ARID1A 1 loveGeneticLandscapeMutations2012 23143597 LOF 38458187
BACH2 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194
BCL6 1 TRUE PASS 4 loveGeneticLandscapeMutations2012 30617194 LOF 12504096
BCL7A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 LOF 32576963
BMP7 1 paneaWholeGenomeLandscape2019 31558468
CCND3 1 richterRecurrentMutationID32012 23143595 GOF 22885699
CHD8 1 grandeGenomewideDiscoverySomatic2019 36201743
CREBBP 1 PASS 4 loveGeneticLandscapeMutations2012 23143597 LOF 33431788
DDX3X 1 schmitzBurkittLymphomaPathogenesis2012 22885699 LOF 34437837
FBXO11 1 richterRecurrentMutationID32012 23143595 LOF 22113614
FOXO1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 23460611
GNA13 1 loveGeneticLandscapeMutations2012 23143597 LOF 26616858
GNAI2 1 grandeGenomewideDiscoverySomatic2019 30617194
HIST1H1E 1 TRUE grandeGenomewideDiscoverySomatic2019 31558468
HNRNPU 1 TRUE paneaWholeGenomeLandscape2019 31558468
ID3 1 richterRecurrentMutationID32012 23143595
KMT2D 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 26366712
MYC 1 TRUE johnstonCmycHypermutationBurkitt1992 1297477 GOF 38565249
P2RY8 1 muppidiLossSignalingGa132014 25274307 LOF 25274307
PCBP1 1 schmitzBurkittLymphomaPathogenesis2012 22885699
ARID1A 1 loveGeneticLandscapeMutations2012 23143597 LOF 38458187 giulino-rothTargetedGenomicSequencing2012
BACH2 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 LOF 26522720 paneaWholeGenomeLandscape2019
BCL6 1 TRUE PASS 4 loveGeneticLandscapeMutations2012 30617194 LOF 12504096 grandeGenomewideDiscoverySomatic2019
BCL7A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 LOF 32576963 thomasGeneticSubgroupsInform2023
BMP7 1 paneaWholeGenomeLandscape2019 31558468 thomasGeneticSubgroupsInform2023
CCND3 1 richterRecurrentMutationID32012 23143595 GOF 22885699 abateDistinctViralMutational2015
CHD8 1 grandeGenomewideDiscoverySomatic2019 36201743 paneaWholeGenomeLandscape2019
CREBBP 1 PASS 4 loveGeneticLandscapeMutations2012 23143597 LOF 33431788 grandeGenomewideDiscoverySomatic2019
DDX3X 1 schmitzBurkittLymphomaPathogenesis2012 22885699 LOF 34437837 abateDistinctViralMutational2015
FBXO11 1 richterRecurrentMutationID32012 23143595 LOF 22113614 grandeGenomewideDiscoverySomatic2019
FOXO1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 23460611 grandeGenomewideDiscoverySomatic2019
GNA13 1 schmitzBurkittLymphomaPathogenesis2012 22885699 LOF 26616858 loveGeneticLandscapeMutations2012
GNAI2 1 grandeGenomewideDiscoverySomatic2019 30617194 thomasGeneticSubgroupsInform2023
HIST1H1E 1 TRUE grandeGenomewideDiscoverySomatic2019 31558468 paneaWholeGenomeLandscape2019
HNRNPU 1 TRUE paneaWholeGenomeLandscape2019 31558468 thomasGeneticSubgroupsInform2023
ID3 1 richterRecurrentMutationID32012 23143595 loveGeneticLandscapeMutations2012
KMT2D 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 26366712 paneaWholeGenomeLandscape2019
MYC 1 TRUE johnstonCmycHypermutationBurkitt1992 1297477 GOF 38565249 loveGeneticLandscapeMutations2012
P2RY8 1 muppidiLossSignalingGa132014 25274307 LOF 25274307 grandeGenomewideDiscoverySomatic2019
PCBP1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 wagenerPCBP1GeneEncoding2015
PHF6 1 thomasGeneticSubgroupsInform2023 36201743 zhouSporadicEndemicBurkitt2019
PTEN 1 loveGeneticLandscapeMutations2012 23143597 LOF 23840064
RFX7 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 30926791
RHOA 1 richterRecurrentMutationID32012 23143595 LOF 26616858
SIN3A 1 grandeGenomewideDiscoverySomatic2019 30617194
SMARCA4 1 richterRecurrentMutationID32012 23143595 LOF 33144586
TCF3 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 22885699
TCL1A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194
TFAP4 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 34283887
TP53 1 wildaInactivationARFMDM2p53Pathway2004 14712292 LOF 12826609
USP7 1 grandeGenomewideDiscoverySomatic2019 30617194
PTEN 1 loveGeneticLandscapeMutations2012 23143597 LOF 23840064 paneaWholeGenomeLandscape2019
RFX7 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 30926791 paneaWholeGenomeLandscape2019
RHOA 1 richterRecurrentMutationID32012 23143595 LOF 26616858 grandeGenomewideDiscoverySomatic2019
SIN3A 1 grandeGenomewideDiscoverySomatic2019 30617194 paneaWholeGenomeLandscape2019
SMARCA4 1 richterRecurrentMutationID32012 23143595 LOF 33144586 grandeGenomewideDiscoverySomatic2019
TCF3 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 22885699 abateDistinctViralMutational2015
TCL1A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 thomasGeneticSubgroupsInform2023
TFAP4 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 34283887 paneaWholeGenomeLandscape2019
TP53 1 wildaInactivationARFMDM2p53Pathway2004 14712292 LOF 12826609 schmitzBurkittLymphomaPathogenesis2012
USP7 1 grandeGenomewideDiscoverySomatic2019 30617194 paneaWholeGenomeLandscape2019
WNK1 1 thomasGeneticSubgroupsInform2023 36201743 paneaWholeGenomeLandscape2019
TBL1XR1 2 maSubtypespecificCooccurringGenetic2022 33792219
B2M 2 maSubtypespecificCooccurringGenetic2022 33792219
Expand Down Expand Up @@ -71,7 +71,7 @@ HIST1H3D 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468
HIST1H3I 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468
HIST1H4J 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468
HLA-DQB1 2 burkhardtClinicalRelevanceMolecular2022 35794096
IGLL5 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468
IGLL5 1 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 thomasGeneticSubgroupsInform2023
IKZF3 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468
IRF8 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468
KANK2 2 schmitzBurkittLymphomaPathogenesis2012 22885699
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