diff --git a/resources/curated/fl_genes.tsv b/resources/curated/fl_genes.tsv index 990f1ae1..499d6555 100644 --- a/resources/curated/fl_genes.tsv +++ b/resources/curated/fl_genes.tsv @@ -38,14 +38,14 @@ KLHL6 1 TRUE morinFrequentMutationHistonemodifying2011 21796119 LOF 29695787 KMT2D 1 morinFrequentMutationHistonemodifying2011 21796119 LOF 26366712 MAP2K1 1 louissaintPediatrictypeNodalFollicular2016 27325104 GOF 28533310 MEF2B 1 TRUE morinFrequentMutationHistonemodifying2011 21796119 NEO 23974956; 26245647 -MYC 1 TRUE NA NA GOF 38565249 -PIM1 1 TRUE drevalGeneticSubdivisionsFollicular2023 NA GOF 27904766 +MYC 1 TRUE rossiAberrantSomaticHypermutation2006 17018394 GOF 38565249 +PIM1 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 GOF 27904766 POU2AF1 1 krysiakRecurrentSomaticMutations2017 28064239 POU2F2 1 krysiakRecurrentSomaticMutations2017 28064239 LOF 26993806 -RRAGC 1 okosunRecurrentMTORC1activatingRRAGC2016 NA GOF 26691987 +RRAGC 1 okosunRecurrentMTORC1activatingRRAGC2016 26691987 GOF 26691987 SGK1 1 TRUE morinFrequentMutationHistonemodifying2011 21796119 GOF 33988691 SMARCA4 1 krysiakRecurrentSomaticMutations2017 28064239 LOF 33144586 -SOCS1 1 TRUE drevalGeneticSubdivisionsFollicular2023 NA LOF 15572583 +SOCS1 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 LOF 15572583 STAT6 1 yildizActivatingSTAT6Mutations2015 25428220 GOF 35851155 TBL1XR1 1 drevalGeneticSubdivisionsFollicular2023 37084389 LOF 32619424 TMSB4X 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 @@ -56,22 +56,20 @@ VMA21 1 hubschmannMutationalMechanismsShaping2021 33953289 LOF 35287545 ABL2 2 russler-germainMutationsAssociatedProgression2023 37563306 ACTG1 2 TRUE hubschmannMutationalMechanismsShaping2021 33953289 ATP6V1A 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 -BIRC6 2 NA NA -BTG1 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA -BTG2 2 TRUE drevalGeneticSubdivisionsFollicular2023 21796119 +BTG1 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 +BTG2 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 CD70 2 russler-germainMutationsAssociatedProgression2023 37493986 -CD79B 2 drevalGeneticSubdivisionsFollicular2023 NA +CD79B 2 drevalGeneticSubdivisionsFollicular2023 37084389 CDC42BPB 2 PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 CILP 2 russler-germainMutationsAssociatedProgression2023 37493986 CPNE8 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 CXCR4 2 TRUE krysiakRecurrentSomaticMutations2017 28064239 CYP2A6 2 russler-germainMutationsAssociatedProgression2023 37493986 NEB 2 maSubtypespecificCooccurringGenetic2022 33792219 -DDX3X 2 NA 37084389 +DDX3X 2 drevalGeneticSubdivisionsFollicular2023 37084389 DHX15 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 TPTE 2 maSubtypespecificCooccurringGenetic2022 33792219 -DTX1 2 TRUE NA NA -DUSP2 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA +DUSP2 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 EGR1 2 krysiakRecurrentSomaticMutations2017 28064239 FZR1 2 PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 GBP7 2 russler-germainMutationsAssociatedProgression2023 37563306 @@ -80,40 +78,36 @@ GRM6 2 russler-germainMutationsAssociatedProgression2023 37493986 HIST1H2BD 2 TRUE krysiakRecurrentSomaticMutations2017 28064239 HIST1H2BM 2 TRUE krysiakRecurrentSomaticMutations2017 28064239 TBC1D3F 2 maSubtypespecificCooccurringGenetic2022 33792219 -HIST1H3B 2 TRUE NA NA HIST1H3G 2 TRUE krysiakRecurrentSomaticMutations2017 28064239 HIST1H3I 2 TRUE krysiakRecurrentSomaticMutations2017 28064239 -HLA-B 2 NA NA IGLL5 2 TRUE russler-germainMutationsAssociatedProgression2023 37493986 -ITPKB 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA +ITPKB 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 JUP 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 KIR3DL1 2 russler-germainMutationsAssociatedProgression2023 37563306 -KLF2 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA +KLF2 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 LAPTM5 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 -LTB 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA +LTB 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 MAGEC1 2 russler-germainMutationsAssociatedProgression2023 37563306 MAP7D1 2 russler-germainMutationsAssociatedProgression2023 37563306 -MEF2C 2 TRUE NA NA +MEF2C 2 TRUE laurentFollicularLymphomaComprises2024 NA MGEA5 2 PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 MKI67 2 russler-germainMutationsAssociatedProgression2023 37493986 MYCBP2 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 -MYD88 2 drevalGeneticSubdivisionsFollicular2023 NA +MYD88 2 drevalGeneticSubdivisionsFollicular2023 37084389 NFKBIA 2 russler-germainMutationsAssociatedProgression2023 37493986 OR8H2 2 russler-germainMutationsAssociatedProgression2023 37493986 -P2RY8 2 drevalGeneticSubdivisionsFollicular2023 NA +P2RY8 2 drevalGeneticSubdivisionsFollicular2023 37084389 PDS5B 2 PASS 3 hubschmannMutationalMechanismsShaping2021 33953289 PPP4C 2 PASS 4 hubschmannMutationalMechanismsShaping2021 33953289 PRKDC 2 hubschmannMutationalMechanismsShaping2021 33953289 -PTPRD 2 drevalGeneticSubdivisionsFollicular2023 NA +PTPRD 2 drevalGeneticSubdivisionsFollicular2023 37084389 PZP 2 russler-germainMutationsAssociatedProgression2023 37493986 RBM6 2 hubschmannMutationalMechanismsShaping2021 33953289 -S1PR2 2 TRUE drevalGeneticSubdivisionsFollicular2023 NA +S1PR2 2 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 SHROOM3 2 russler-germainMutationsAssociatedProgression2023 37493986 SRRM2 2 russler-germainMutationsAssociatedProgression2023 37493986 STAB2 2 russler-germainMutationsAssociatedProgression2023 37493986 TMEM30A 2 morinFrequentMutationHistonemodifying2011 21796119 TPP1 2 hubschmannMutationalMechanismsShaping2021 33953289 XIRP2 2 russler-germainMutationsAssociatedProgression2023 37493986 -ZC3H12A 2 NA NA ZNF608 2 krysiakRecurrentSomaticMutations2017 28064239 -