add functional

resources/curated/genes_with_functional_data.tsv

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+gene,experimental evidence,experimental comment,clinical evidence,clinical comment
+ARID1A,barisicARID1AOrchestratesSWI2024,,,
+B2M,challa-malladiCombinedGeneticInactivationa,,,
+CIITA,,,guoSGK1MutationStatus2022b,
+CASP8,hakemCaspase8EssentialMaintaining2012,,,
+BCL10,xiaBCL10MutationsDefine2022,,,
+BCL2,balSuperenhancerHypermutationAlters2022,noncoding mutations,,
+BCL6,balSuperenhancerHypermutationAlters2022,noncoding mutations,,
+BCL7A,balinas-gaviraFrequentMutationsAminoterminal2020b,,,
+BTG1,mlynarczykBTG1MutationYields2023b,,,
+BTG2,,,guoMutationBTG2Gene2022b,prognostic in primay testicular DLBCL
+CARD11,lenzOncogenicCARD11Mutations2008,,zhaoExpressionPrognosticValue2016,prognostic in DLBCL (English article unavailable)
+CCND3,schmitzBurkittLymphomaPathogenesis2012,,,
+CD58,challa-malladiCombinedGeneticInactivationa,,,
+CD79B,davisChronicActiveBcellreceptor2010,,,
+CDKN2A,,,jardinDiffuseLargeBcell2010a,
+CREBBP,pasqualucciInactivatingMutationsAcetyltransferase2011a,,,
+DDX3X,gongSequentialInverseDysregulation2021,,kizhakeyilDDX3XLossAdverse2021,marker of chemoresistance
+DTX1,demirandaExomeSequencingReveals2014,,merirantaDeltex1MutationsPredict2017b,
+EEF1A1,,,gongExpressionClinicalValue2021,
+EP300,pasqualucciInactivatingMutationsAcetyltransferase2011a,,,
+ETV6,,,guoSGK1MutationStatus2022b,
+EZH2,yapSomaticMutationsEZH22011b,,,
+FAS,seebergerLossFasCD952001,MALT lymphoma,,
+FBXO11,schneiderFBXO11InactivationLeads2016b,,,
+FBXW7,saffieFBXW7TriggersDegradation2020b,,,
+FOXO1,trinhAnalysisFOXO1Mutations,,trinhAnalysisFOXO1Mutations,prognostic in DLBCL
+GNA13,muppidiLossSignalingGa132014b,,,
+HNRNPH1,pararajalingamCodingNoncodingDrivers2020,,pararajalingamCodingNoncodingDrivers2020,prognostic in MCL
+IRF8,qiuIRF8mutantCellLymphoma2024,,,
+ID3,richterRecurrentMutationID32012a,,,
+IL4R,viganoSomaticIL4RMutations2018b,,,
+KLHL14,choiRegulationCellReceptordependent2020,,hodkinsonBiomarkersResponseIbrutinib2021,
+KLHL6,merirantaDisruptionKLHL6Fuels2024,,,
+KMT2D,liLossCREBBPKMT2D2024,,rushtonGeneticEvolutionaryPatterns2020,
+MEF2B,yingMEF2BMutationsLead,,,
+MEF2C,jingjingNovelMEF2CMutation2020,,,
+MS4A1,rushtonGeneticEvolutionaryPatterns2020,,rushtonGeneticEvolutionaryPatterns2020,
+MGA,,,guoSGK1MutationStatus2022b,
+MPEG1,,,guoSGK1MutationStatus2022b,
+MYC,giallongoIdentificationCmycOncogene1983,,christieCMYCTranslocation142008,
+MYD88,ngoOncogenicallyActiveMYD882011a,,guoSGK1MutationStatus2022b,
+NFKBIZ,arthurGenomewideDiscoverySomatic2018,,,
+NFKBIE,mansouriFrequentNFKBIEDeletions2016,,,
+NOTCH1,,,kridelWholeTranscriptomeSequencing2012,prognostic in MCL
+NOTCH2,,,campos-martinClinicalDiagnosticRelevance2017,SMZL
+OSBPL10,,,dobashiTP53OSBPL10Alterations2018b,
+P2RY8,muppidiLossSignalingGa132014b,,,
+RHOA,ohayreInactivatingMutationsGNA132016,,,
+RRAGC,ortega-molinaOncogenicRagGTPase2019b,,,
+PRDM1,pasqualucciInactivationPRDM1BLIMP12006a,,,
+POU2F2,hodsonRegulationNormalBcell2016a,,,
+PIM1,,,guoSGK1MutationStatus2022b,
+SGK1,hartmannHighlyRecurrentMutations2016b,DLBCL cell lines,guoSGK1MutationStatus2022b,
+S1PR2,floriHematopoieticOncoproteinFOXP12016,,,
+STAT3,huNovelMissenseM206K2013b,,,
+SMARCA4,dengSMARCA4HaploinsufficientCell2024,,,
+SPEN,,,guoSGK1MutationStatus2022b,
+STAT6,yildizActivatingSTAT6Mutations2015c,,,
+SOCS1,melznerBiallelicMutationSOCS12005a,,,
+TCF3,schmitzBurkittLymphomaPathogenesis2012,,,
+TFAP4,toncUnexpectedSuppressionTumorigenesis2021,,,
+TMEM30A,ennishiTMEM30ALossoffunctionMutations2020b,,ennishiTMEM30ALossoffunctionMutations2020b,predictive of good outcome on chemotherapy
+TNFRSF14,,,guoSGK1MutationStatus2022b,
+TBL1XR1,venturuttiTBL1XR1MutationsDrive2020b,,,
+TNFAIP3,compagnoMutationsMultipleGenes2009a,,,
+TP53,rowhTp53DeletionLineage2011,mouse model,,