diff --git a/resources/curated/somatic_hypermutation_locations_GRCh37.txt b/resources/curated/somatic_hypermutation_locations_GRCh37.txt index b83ac93f..c4614940 100644 --- a/resources/curated/somatic_hypermutation_locations_GRCh37.txt +++ b/resources/curated/somatic_hypermutation_locations_GRCh37.txt @@ -1,89 +1,130 @@ -chr_name hg19_start hg19_end gene region -chr1 203274698 203275778 BTG2 intronic -chr1 226864857 226873452 ITPKB intronic -chr1 226920563 226927885 ITPKB TSS -chr1 226921088 226927982 ITPKB intron-1 -chr10 127578912 127591133 FANK1 TSS -chr11 35156769 35164248 CD44 TSS -chr11 60223385 60225310 MS4A1 TSS -chr11 65190369 65192380 NEAT1 ncRNA -chr11 65265237 65268359 MALAT1 ncRNA -chr11 102188170 102190077 BIRC3 TSS -chr11 111248078 111250224 POU2AF1 TSS -chr11 128339774 128345731 ETS1 introns -chr11 128388492 128394163 ETS1 TSS-2 -chr12 11796001 11812968 ETV6 TSS -chr12 25204045 25213569 LRMP TSS -chr12 92537999 92539598 BTG1 TSS -chr12 113492311 113497546 DTX1 TSS -chr12 122456912 122464036 BCL7A TSS -chr13 46957278 46963342 C13orf18 TSS -chr14 69257848 69259739 ZFP36L1 TSS -chr14 94940587 94942549 SERPINA9 TSS -chr14 96179535 96180366 TCL1A TSS -chr15 59658991 59671152 MYO1E TSS -chr16 10970795 10975465 CIITA TSS -chr16 11347512 11350007 SOCS1 intron-1 -chr16 27322895 27329423 IL4R TSS -chr16 85931918 85933977 IRF8 TSS -chr17 3597616 3599572 P2RX5 TSS -chr17 56407732 56410140 TSPOAP1 intergenic -chr17 75424734 75471471 SEPT9 intronic -chr18 60796984 60814103 BCL2 intronic -chr18 60982728 60988342 BCL2 TSS -chr19 10340142 10341764 S1PR2 TSS -chr19 16434978 16439011 KLF2 TSS -chr19 19279635 19281441 MEF2B TSS -chr2 60773789 60783486 BCL11A TSS -chr2 96808901 96811913 DUSP2 intron-1 -chr2 111874854 111882174 BCL2L11 TSS -chr2 136874728 136875461 CXCR4 intronic -chr20 46128611 46138099 NCOA3 TSS -chr20 49120482 49140477 PTPN1 TSS -chr21 26934372 26937651 MIR155HG TSS -chr22 23229554 23232042 IGLL5 TSS -chr3 16546433 16556786 RFTN1 TSS -chr3 32020518 32024930 OSBPL10 TSS-1 -chr3 71104986 71119518 FOXP1 TSS-4 -chr3 71176427 71180960 FOXP1 TSS-3 -chr3 71350633 71357665 FOXP1 TSS-2 -chr3 71503103 71504870 FOXP1 intron-1b -chr3 71550753 71551478 FOXP1 intron-1a -chr3 71626341 71635648 FOXP1 TSS-1 -chr3 101546669 101547704 NFKBIZ TSS-1 -chr3 101568239 101569274 NFKBIZ TSS-2 -chr3 183269360 183274139 KLHL6 TSS -chr3 186737482 186741455 ST6GAL1 TSS-2 -chr3 186739628 186740875 ST6GAL1 TSS-1 -chr3 186781067 186784816 ST6GAL1 intronic-2 -chr3 186783199 186784291 ST6GAL1 intronic-1 -chr3 187458526 187464632 BCL6 TSS -chr3 187771678 187982852 LPP TSS-1 -chr3 188377178 188491248 LPP intronic -chr4 40193105 40204231 RHOH TSS -chr5 88131209 88206620 MEF2C TSS -chr5 131823933 131826458 IRF1 TSS -chr5 149790977 149792349 CD74 TSS -chr5 158500476 158532769 EBF1 TSS -chr6 390572 394093 IRF4 TSS -chr6 14118026 14120025 CD83 TSS -chr6 31548325 31550717 LTB intron-1 -chr6 37138104 37139804 PIM1 TSS -chr6 90981034 91016134 BACH2 TSS -chr6 134487960 134499859 SGK1 TSS-1 -chr7 5568297 5570856 ACTB TSS -chr8 11347723 11355318 BLK TSS -chr8 128748352 128749427 MYC TSS -chr9 37021323 37043181 PAX5 TSS-2 -chr9 37023396 37027663 PAX5 intron-1 -chr9 37032576 37037704 PAX5 TSS-1 -chr9 37192080 37207549 ZCCHC7 intron-3 -chr9 37276495 37342191 ZCCHC7 intronic -chr9 37282092 37309161 ZCCHC7 intron-2 -chr9 37323113 37340687 ZCCHC7 intron-1 -chr9 37369209 37372160 PAX5 distal-enhancer-1 -chr9 37382267 37385854 PAX5 distal-enhancer-2 -chr9 37395932 37409239 PAX5 distal-enhancer-3 -chr9 37423010 37425279 GRHPR TSS -chrX 12993308 12994511 TMSB4X intronic -chrX 48774756 48776255 PIM2 TSS +chr_name hg19_start hg19_end gene region regulatory_comment +chr1 6661482 6662702 KLHL21 TSS NA +chr1 23885584 23885835 ID3 TSS NA +chr1 28832551 28836339 RCC1 TSS NA +chr1 31229012 31232011 LAPTM5 TSS NA +chr1 150550814 150552135 MCL1 intron NA +chr2 88904839 88909096 EIF2Ak3 intron NA +chr2 88925456 88927581 EIF2Ak3 TSS NA +chr2 232572640 232574297 PTMA TSS NA +chr2 157669490 157671299 FCRL3 TSS NA +chr1 203274698 203275778 BTG2 intron active_promoter +chr1 206285239 206288105 RHEX TSS NA +chr1 226864857 226873452 ITPKB intron weak_enhancer +chr1 226920563 226927885 ITPKB TSS active_promoter +chr1 226921088 226927982 ITPKB intron-1 enhancer +chr2 60773789 60783486 BCL11A TSS active_promoter +chr2 96808901 96811913 DUSP2 intron-1 enhancer +chr2 111874854 111882174 BCL2L11 TSS active_promoter +chr2 136874728 136875461 CXCR4 intron weak_promoter +chr3 16546433 16556786 RFTN1 TSS active_promoter-strong_enhancer +chr3 32020518 32024930 OSBPL10 TSS-1 active_promoter +chr3 71104986 71119518 FOXP1 TSS-4 active_promoter +chr3 71176427 71180960 FOXP1 TSS-3 active_promoter +chr3 71350633 71357665 FOXP1 TSS-2 active_promoter +chr3 71503103 71504870 FOXP1 intron-1b intron +chr3 71550753 71551478 FOXP1 intron-1a intron +chr3 71626341 71635648 FOXP1 TSS-1 active_promoter +chr3 101546669 101547704 NFKBIZ TSS-1 active_promoter +chr3 101568239 101569274 NFKBIZ TSS-2 active_promoter +chr3 183269360 183274139 KLHL6 TSS active_promoter-strong_enhancer +chr3 186647943 186650177 ST6GAL1 TSS-2 NA +chr3 186739628 186740875 ST6GAL1 TSS-1 active_promoter +chr3 186709494 186721749 ST6GAL1 intron-2 NA +chr3 186782522 186784438 ST6GAL1 intron-1 strong_enhancer +chr3 187458526 187464632 BCL6 TSS NA +chr3 187615533 187625659 BCL6 Intergenic-1 NA +chr3 187625659 187638101 BCL6 Intergenic-2 NA +chr3 187657518 187665996 BCL6 Intergenic-3 NA +chr3 187675741 187690717 BCL6 Intergenic-4 NA +chr3 187690717 187705000 BCL6 Intergenic-5 NA +chr3 187771678 187801626 LPP TSS-1 NA +chr3 187801627 187813568 LPP TSS-2 NA +chr3 187813569 187955254 LPP TSS-3 NA +chr3 187955255 187969220 LPP TSS-4 NA +chr3 188261523 188327097 LPP TSS-5 NA +chr3 188377178 188401951 LPP intron-1 NA +chr3 188401952 188461879 LPP intron-2 NA +chr3 188461880 188474683 LPP intron-3 NA +chr3 188474684 188491248 LPP intron-4 NA +chr4 25861094 25868788 SEL1L3 TSS NA +chr4 40193105 40204231 RHOH TSS active_promoter +chr5 88131209 88174373 MEF2C TSS-3 active_promoter +chr5 88174374 88182243 MEF2C TSS-2 active_promoter +chr5 88182244 88206620 MEF2C TSS-1 active_promoter +chr5 131823933 131826458 IRF1 TSS active_promoter +chr5 149790977 149792349 CD74 TSS active_promoter +chr5 158500476 158532769 EBF1 TSS active_promoter +chr6 390572 394093 IRF4 TSS active_promoter +chr6 14118026 14120025 CD83 TSS active_promoter-strong_enhancer +chr6 25861094 25868788 RNF144B TSS NA +chr6 31548325 31550717 LTB intron-1 enhancer +chr6 37138104 37139804 PIM1 TSS active_promoter +chr6 90981034 91016134 BACH2 TSS NA +chr6 90059730 90063703 UBE2J1 TSS NA +chr6 134487960 134499859 SGK1 TSS-1 active_promoter +chr6 159237903 159240216 EZR TSS NA +chr7 5568297 5570856 ACTB TSS active_promoter +chr8 11347723 11355318 BLK TSS strong_enhancer +chr8 128748352 128749427 MYC TSS active_promoter +chr9 37023396 37027663 PAX5 intron-1 intron +chr9 37029849 37037154 PAX5 TSS-1 active_promoter +chr9 37192080 37207549 ZCCHC7 intron-4 intron +chr9 37275952 37306152 ZCCHC7 intron-2 intron +chr9 37312655 37328260 ZCCHC7 intron-3 intron +chr9 37329706 37340398 ZCCHC7 intron-1 intron +chr9 37369209 37372160 PAX5 distal-enhancer-1 enhancer +chr9 37382267 37385854 PAX5 distal-enhancer-2 enhancer +chr9 37395932 37409239 PAX5 distal-enhancer-3 enhancer +chr9 37423010 37425279 GRHPR TSS active_promoter +chr9 130740362 130744800 FAM102A TSS NA +chr9 132800698 132805491 FNBP1 TSS NA +chr10 127578912 127591133 FANK1 TSS active_promoter +chr11 9595246 9599502 WEE1 intron NA +chr11 35156769 35164248 CD44 TSS active_promoter +chr11 60223385 60225310 MS4A1 TSS active_promoter +chr11 65190369 65192380 NEAT1 ncRNA enhancer +chr11 65265237 65268359 MALAT1 ncRNA enhancer +chr11 102188170 102190077 BIRC3 TSS active_promoter +chr11 111248078 111250224 POU2AF1 TSS active_promoter +chr11 118754458 118756514 CXCR5 TSS NA +chr11 128339774 128345731 ETS1 intron enhancer +chr11 128388492 128394163 ETS1 TSS-2 active_promoter +chr12 8762328 8765099 ACIDA TSS NA +chr12 11796001 11812968 ETV6 TSS strong_enhancer +chr12 25204045 25213569 LRMP TSS active_promoter +chr12 92537999 92539598 BTG1 TSS active_promoter +chr12 113492311 113497546 DTX1 TSS NA +chr12 122456912 122464036 BCL7A TSS poised_promoter +chr13 46957278 46963342 C13orf18 TSS active_promoter +chr13 75982519 75986015 TBC1D4 intron NA +chr14 69257848 69259739 ZFP36L1 TSS active_promoter +chr14 94940587 94942549 SERPINA9 TSS NA +chr14 96179535 96180366 TCL1A TSS active_promoter +chr15 59658991 59671152 MYO1E TSS NA +chr16 10970795 10975465 CIITA TSS active_promoter-strong_enhancer +chr16 11347512 11350007 SOCS1 intron-1 enhancer +chr16 27322895 27329423 IL4R TSS active_promoter +chr16 85931918 85933977 IRF8 TSS active_promoter +chr17 3597616 3599572 P2RX5 TSS active_promoter +chr17 37928959 37940119 IKZF3 TSS-1 NA +chr17 38015776 38024832 IKZF3 TSS-2 NA +chr17 56407732 56410140 TSPOAP1 intergenic enhancer +chr17 75424734 75440956 SEPTIN9 intron-1 active_promoter +chr17 75443766 75451177 SEPTIN9 intron-2 active_promoter +chr17 75453203 75471471 SEPTIN9 intron-3 active_promoter +chr17 79478289 79479959 ACTG1 intron NA +chr18 60796984 60814103 BCL2 intron strong_enhancer +chr18 60982728 60988342 BCL2 TSS active_promoter +chr19 10340142 10341764 S1PR2 TSS active_promoter +chr19 16434978 16439011 KLF2 TSS intron +chr19 19279635 19281441 MEF2B TSS active_promoter +chr20 46128611 46138099 NCOA3 TSS active_promoter +chr20 49120482 49140477 PTPN1 TSS active_promoter +chr21 26934372 26937651 MIR155HG TSS active_promoter +chr22 23229554 23232042 IGLL5 TSS NA +chr22 23522060 23528313 BCR TSS NA +chr22 29194943 29197461 XBP1 TSS NA +chrX 12993308 12994511 TMSB4X intron active_promoter +chrX 42800580 42804184 DDX3X intergenic NA +chrX 48774756 48776255 PIM2 TSS active_promoter