diff --git a/resources/curated/fl_genes.tsv b/resources/curated/fl_genes.tsv index 64dab84d..274a464f 100644 --- a/resources/curated/fl_genes.tsv +++ b/resources/curated/fl_genes.tsv @@ -1,8 +1,8 @@ Gene Tier aSHM QC Mean Variant Quality citekey PMID MutationEffect Mutation-PMID Additional_Support ACTB 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 kalmbachNovelInsightsPathogenesis2023 ARID1A 1 krysiakRecurrentSomaticMutations2017 28064239 LOF 38458187 crouchMolecularSubclustersFollicular2022 -ATP6AP1 1 okosunRecurrentMTORC1activatingRRAGC2016 26691987 drevalGeneticSubdivisionsFollicular2023 -ATP6V1B2 1 okosunRecurrentMTORC1activatingRRAGC2016 26691987 LOF 28064239 drevalGeneticSubdivisionsFollicular2023 +ATP6AP1 1 greenMutationsEarlyFollicular2015 25713363 okosunRecurrentMTORC1activatingRRAGC2016 +ATP6V1B2 1 greenMutationsEarlyFollicular2015 25713363 LOF 28064239 okosunRecurrentMTORC1activatingRRAGC2016 B2M 1 morinFrequentMutationHistonemodifying2011 21796119 LOF 22137796 crouchMolecularSubclustersFollicular2022 BCL10 1 russler-germainMutationsAssociatedProgression2023 37493986 GOF 35658124 crouchMolecularSubclustersFollicular2022 BCL2 1 TRUE morinFrequentMutationHistonemodifying2011 21796119 schuetzBCL2MutationsDiffuse2012 @@ -15,7 +15,7 @@ CD83 1 TRUE russler-germainMutationsAssociatedProgression2023 37493986 crouc CREBBP 1 pasqualucciInactivatingMutationsAcetyltransferase2011 21390126 LOF 21390126 morinFrequentMutationHistonemodifying2011 CTSS 1 barariaCathepsinAlterationsInduce2020 32330423 GOF 32330455 drevalGeneticSubdivisionsFollicular2023 EBF1 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 LOF 28692033 crouchMolecularSubclustersFollicular2022 -EEF1A1 1 hubschmannMutationalMechanismsShaping2021 33953289 kalmbachNovelInsightsPathogenesis2023 +EEF1A1 1 greenMutationsEarlyFollicular2015 25713363 hubschmannMutationalMechanismsShaping2021 EP300 1 pasqualucciInactivatingMutationsAcetyltransferase2011 21390126 LOF 21390126 morinFrequentMutationHistonemodifying2011 EZH2 1 morinSomaticMutationsAltering2010 20081860 GOF 21078963 drevalGeneticSubdivisionsFollicular2023 FAS 1 morinFrequentMutationHistonemodifying2011 21796119 LOF 20935634 crouchMolecularSubclustersFollicular2022 @@ -43,7 +43,7 @@ POU2AF1 1 krysiakRecurrentSomaticMutations2017 28064239 crouchMolecularSubc POU2F2 1 krysiakRecurrentSomaticMutations2017 28064239 LOF 26993806 crouchMolecularSubclustersFollicular2022 RRAGC 1 okosunRecurrentMTORC1activatingRRAGC2016 26691987 GOF 26691987 drevalGeneticSubdivisionsFollicular2023 SGK1 1 TRUE morinFrequentMutationHistonemodifying2011 21796119 GOF 33988691 crouchMolecularSubclustersFollicular2022 -SMARCA4 1 krysiakRecurrentSomaticMutations2017 28064239 LOF 33144586 crouchMolecularSubclustersFollicular2022 +SMARCA4 1 greenMutationsEarlyFollicular2015 25713363 LOF 33144586 krysiakRecurrentSomaticMutations2017 SOCS1 1 TRUE drevalGeneticSubdivisionsFollicular2023 37084389 LOF 15572583 crouchMolecularSubclustersFollicular2022 STAT6 1 yildizActivatingSTAT6Mutations2015 25428220 GOF 35851155 crouchMolecularSubclustersFollicular2022 TBL1XR1 1 drevalGeneticSubdivisionsFollicular2023 37084389 LOF 32619424 crouchMolecularSubclustersFollicular2022