LTB
LTB is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas, which complicates the interpretation of mutations at this locus.
| Entity | Tier | Description |
|---|---|---|
| BL | 2-a | aSHM target; Although recurrent, the relevance of mutations in BL is tenuous |
| DLBCL | 1-a | aSHM target and high-confidence DLBCL gene |
| FL | 1-a | aSHM target and high-confidence FL gene |
| Entity | source | frequency (%) |
|---|---|---|
| BL | GAMBL genomes+capture | 3.00 |
| BL | Thomas cohort | 3.00 |
| BL | Panea cohort | 5.90 |
| DLBCL | GAMBL genomes | 9.37 |
| DLBCL | Schmitz cohort | 8.51 |
| DLBCL | Reddy cohort | NA |
| DLBCL | Chapuy cohort | 9.83 |
| FL | GAMBL genomes | 8.78 |
| Entity | aSHM | Significant selection | dN/dS (missense) | dN/dS (nonsense) |
|---|---|---|---|---|
| BL | Yes | No | 4.330 | 0.000 |
| DLBCL | Yes | No | 2.261 | 10.402 |
| FL | Yes | No | 5.259 | 35.735 |
| chr_name | hg19_start | hg19_end | region | regulatory_comment |
|---|---|---|---|---|
| chr6 | 31548325 | 31550717 | intron-1 | enhancer |
View coding variants in ProteinPaint hg19 or hg38
View all variants in GenomePaint hg19 or hg38
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