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rdmorin edited this page Dec 13, 2024 · 26 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

NCOR2

Overview

Mutations in this gene are relatively rare in DLBCL overall but show a pattern of inactivation.

History

%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
    title Publication timing
      2012-10-04 : Schmitz : BL
      2016-09-08 : Spina : MZL
      2021-04-01 : Sarkozy : PMBL
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Relevance tier by entity

Entity Tier Description
PMBL 2 relevance in PMBL/cHL/GZL not firmly established[@sarkozyMutationalLandscapeGray2021]
MZL 1 high-confidence MZL gene[@spinaGeneticsNodalMarginal2016]
BL 2 relevance in BL not firmly established[@schmitzBurkittLymphomaPathogenesis2012]
DLBCL 2 relevance in DLBCL not firmly established

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 6.24
BL Thomas cohort NA
BL Panea cohort NA
DLBCL GAMBL genomes 2.10
DLBCL Schmitz cohort 5.74
DLBCL Reddy cohort 3.60
DLBCL Chapuy cohort 4.27

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 0.551 0.000
DLBCL No No 1.376 4.613
FL No No 0.985 0.000

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

NCOR2 Expression

References

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